Cell type markers for annotation and discovery

Rapid cell type annotation of single cell RNA-seq data and biomarker discovery with the largest reference database of cell marker genes

Cell type markers for annotation and discovery

Rapid cell type annotation of single cell RNA-seq data and biomarker discovery with the largest reference database of cell marker genes

Cell type markers for annotation and discovery

Rapid cell type annotation of single cell RNA-seq data and biomarker discovery with the largest reference database of cell marker genes

Cell type markers for annotation and discovery

Rapid cell type annotation of single cell RNA-seq data and biomarker discovery with the largest reference database of cell marker genes

Use the largest reference database of cell types
CellKb is a knowledgebase of cell type marker gene sets manually collected and curated from scientific literature. All cell types are annotated with information about tissue, disease and experimental conditions, and integrated with protein-protein interaction networks.
Gene sets
49,445
Cell Types
3,479
Publications
882
Species
10

CellKb v2.3 Updated: 20 Oct 2022

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Annotate cell types in single cell and spatial RNA-seq data
CellKb helps scientists rapidly search through published literature to find matching cell types associated with known cell marker genes, saving significant time and money.
Search cell types using marker genes
Search cell types with keywords
Search cell types by ontology
Search cell types across species
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Discover cell type specific biomarkers
CellKb helps scientists quickly and easily find and compare published cell type marker genes across tissues, diseases and publications.
Compare marker genes between normal and disease conditions
Compare marker genes between multiple diseases
Compare marker genes across tissues
Compare marker genes across publications
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The CellKb Advantage
CellKb helps scientists quickly and easily find and compare published cell type marker genes across tissues, diseases and publications.
More cell types than any other resource
Link to source publication
Frequent data updates
Extensive search capabilities
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Our users
Scientists from academic institutions and pharmaceutical companies are using CellKb to gain actionable insights from their biological data.
1,400+ users
400+ organizations
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