SpeciesMarker gene sets
Homo sapiens12597
Mus musculus6785
Danio rerio956
Caenorhabditis elegans598
Schmidtea mediterranea527
Drosophila melanogaster393
Nematostella vectensis243
Rattus norvegicus175
Xenopus tropicalis171
Arabidopsis thaliana58
Macaca fascicularis56
Publication Marker gene sets Year Type Description
Stewart et al. Science 80 2020 Single Cell Global immune landscape of the human kidney
Guo et al. CellStemCell 20 2020 Single Cell Transcriptional cell atlas of testis development during human puberty
Wang et al. JExpMed 28 2020 Single Cell Single-cell transcriptome analysis of human intestine
Chen et al. NatureBiotech 41 2020 Single Cell Single cell sequencing of the transcriptome and chromatin accessibility in the same cell
Liang et al. NatureComm 8 2020 Single Cell Transcriptome profiling of human retinal tissue
Hung et al. PNAS 22 2020 Single Cell A cell atlas of the adult Drosophila midgut
Ma et al. Cell 171 2020 Single Cell Single-cell transcriptomic atlas for aging and calorific restriction in rat
Kalucka et al. Cell 78 2020 Single Cell Single-cell transcriptome atlas os murine endothelial cells
Johnson et al. DevCell 62 2020 Single Cell Atlas of the cell types participating in mouse digit tip regeneration
Zhang et al. Cell 55 2020 Single Cell scRNA-seq analyses on immune and stromal populations from colorectal cancer patients
Chen et al. eNeuro 7 2020 Single Cell Single-cell molecular profiling of the mouse neurohypophysis
Wang et al. NatureCellBiol 15 2020 Single Cell Transcriptional profiling of single cells from normal, failed and partially recovered adult human hearts
Slaidina et al. GeneDev 13 2020 Single Cell scRNA-seq of developing Drosophila ovaries
Schafflick et al. NatureComm 17 2020 Single Cell Single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis
Rubenstein et al. ScientificRep 11 2020 Single Cell Single-cell transciptional profiles in human skeletal muscle
Kim et al. NatureComm 29 2020 Single Cell Single-cell analysis of gastrointestinal stromal cells in mouse
Horns et al. CellReports 1 2020 Single Cell Memory B cell activation in response to influenza vaccination
Durante et al. NatureComm 30 2020 Single Cell Study of tumor microenvironment in uveal melanoma at single-cell resolution
Orozco et al. CellReports 11 2020 Single Cell Single-cell characterization of uman retina and retinal pigment epithelium
Zhang et al. NatureComm 25 2020 Single Cell Single-cell transcriptomic survey or aortas and coronary arteries in young and old non-primate humans
Wang et al. Cell 31 2020 Single Cell Single-cell transcriptomic landscape of ovaries from young and aged non-human primates
Sridhar et al. CellReports 23 2020 Single Cell Study of human retinal development using scRNA-seq and comparison with development of retinal organoids
He et al. JallergyClinImmunol 44 2020 Single Cell Atlas of cell populations in atopic dermatitis and healthy skin cells
Wallace et al. Elife 22 2020 Single Cell Characterization of the cells of the mouse habenula
Wen et al. NatureNeuroscience 21 2020 Single Cell Single-cell analysis of the basic cell types in the mouse suprachiasmatic nucleus
Vijay et al. NatureMetab 42 2020 Single Cell Human single-cell transcriptome atlas acess fat depots
vandenBrink et al. Nature 13 2020 Single Cell Study of mouse gastruloids using scRNA-seq
Hu et al. ScientificRep 7 2020 Single Cell Effect of delta-9-tetrahydrocannabinol on human peripheral blood cells
Anderson et al. CellReports 69 2020 Single Cell Examination of the contribution of Foxp1 to striatal development in mouse
Batiuk et al. NatureComm 6 2020 Single Cell Investigation of astrocyte molecular diversityy across mouse forebrain regions using scRNA-seq
Haensel et al. CellReports 29 2020 Single Cell Study of epidermal basal cell states during skin homeostasis and wound healing
Lehmann et al. JExpMed 13 2020 Single Cell Study of mouse retinal pigment epithelium/choroid cell types using scRNA-seq
Han et al. Nature 1710 2020 Single Cell Human cell landscape at single-cell levels
Barruet et al. Elife 17 2020 Single Cell scRNA-seq of human satellite cells from vasti lateralis muscle
Kazer et al. NatureMed 12 2020 Single Cell Single-cell analysis of immune dynamics during hyperacute HIV-1 infection
Fujimoto et al. PlosBiol 4 2020 Single Cell Transcriptome of lymphatic endothelial cells in murine skin-draining lymph nodes
Zakharov et al. JExpMed 24 2020 Single Cell Study of cellular complexity in murine islet cells at all stages of autoimmune diabetes
Smith et al. BloodAdv 20 2020 Single Cell scRNA-seq of NK cells in unstimulated and IL2-activated cells from healthy donors
Cano-Gamez et al. NatureComm 22 2020 Single Cell Single-cell transcriptomics of naive and memory CD4+ T cells in resting and stimulated state
Allen et al. Elife 120 2020 Single Cell Single cell atlas of adult Drosophila ventral nerve cord
Sole-Boldo et al. CommunBiol 17 2020 Single Cell scRNA-seq of sun-protected human skin
Jevitt et al. PlosBiol 32 2020 Single Cell Single-cell atlas of adult Drosophila ovary
Zhao et al. CellDiscov 34 2020 Single Cell Study of human liver resident immune cells using scRNA-seq
Qadir et al. PNAS 7 2020 Single Cell scRNA-seq of human pancreatic ductal cells
Kim et al. NatureComm 9 2020 Single Cell Study of lung adenocarcinoma using scRNA-seq
Psaila et al. MolCell 17 2020 Single Cell Single-cell transcriptome profiling of CD34+ lineage- hematopoietic stem and progenitor cells from healthy controls and patients with myelofibrosis
Liao et al. NatureMed 14 2020 Single Cell Atlas of bronchoalveolar immune cells from patients with varying severity of COVID-19
Kolla et al. NatureComm 59 2020 Single Cell Transcriptional profile of isolated mouse cochlear cells collected at four developmental time points
Khrameeva et al. GenomeRes 16 2020 Single Cell snRNAseq of 3 anatomical regions of human, chimpanzee, bonobo and macaque brains
Davidson et al. CellReports 13 2020 Single Cell scRNA-seq used to demonstrate the increasing heterogeneity within the stroma as a tumor develops
Zhao et al. Angiogenesis 5 2020 Single Cell scRNA-seq of liver endothelial cells in mouse
Karagiannis et al. NatureComm 26 2020 Single Cell Using scRNA-seq to characterize cell-type specific gene expression in the peripheral immune system of opioid-dependent individuals compared to non-dependent controls
Ramachandran et al. Nature 55 2019 Single Cell Transcriptional profiles of single cells from healthy and cirrhotic human liver
Tran et al. DevCell 20 2019 Single Cell Understanding human podocyte development using scRNA-seq
Popescu et al. Nature 27 2019 Single Cell Single-cell transcriptome profiling of human liver, skin, kidney and yolk sac cells
Martin et al. Cell 34 2019 Single Cell scRNA-seq of ileal Crohn's disease lesions
Peyser et al. AmJRespirCellMolBiol 17 2019 Single Cell scRNA-seq of a bleomycin-induced pulmonary fibrosis mouse model
Hulin et al. Development 18 2019 Single Cell An atlas of heart valve cell diversity
Neftel et al. Cell 8 2019 Single Cell scRNA-seq of gliobastoma tumors
Smillie et al. Cell 71 2019 Single Cell Atlas of single cells from the colon mucosa of ulcerative colitis patients and healthy individuals
Tibbit et al. Immunity 6 2019 Single Cell scRNA-seq of T helper cell response to house dust mites
Xiong et al. MolCell 10 2019 Single Cell scRNA-seq of non-parenchymal cells from healthy and nonalcoholic steatohepatitis mouse livers
Baron et al. Cell 7 2019 Single Cell scRNA-seq of whole kidney marrow in zebrafish
Szabo et al. NatureComm 21 2019 Single Cell Single-cell transcriptomics of resting and actived human T cells
Menon et al. NatureComm 21 2019 Single Cell Single-cell transcriptomic atlas of the human retina
Kanaya et al. CommunBiol 33 2019 Single Cell Effect of estrogen and polybrominated diphenyl ethers on mammary tissue during menopause in mouse
Voigt et al. PNAS 24 2019 Single Cell Single-cell transcriptomics of the human retinal pigment epithelium and choroid
Dobbie et al. CellReports 6 2019 Single Cell scRNA-seq to study the hepatic mesenchyme in healthy and fibrotic mouse liver
Zhao et al. Development 18 2019 Single Cell Single cell transcriptome of hemangiogenic differentiation in mouse
Pique-Regi et al. Elife 63 2019 Single Cell Single cell transcriptional signatures of the human placenta in term and preterm parturition
Jones et al. CellStemCell 8 2019 Single Cell Study of the diversity of cell types in the oral mucosal basal layer in mouse
Li et al. Cell 19 2019 Single Cell Transcriptional profiling of intratumoral immune infiltrates of 25 melanoma patients
Blecher-Gonen et al. CellSystems 16 2019 Single Cell Identification of cell types using scRNA-seq in pathogen-challenged mouse lymph nodes
Kalamakis et al. Cell 9 2019 Single Cell Single-cell transcriptomics of neural stem cell in young and aging murine brain
vanGalen et al. Cell 9 2019 Single Cell A combination of transcriptomics and mutational analyses in single cells from acute myeloid leukemia patients
Giordani et al. MolCell 10 2019 Single Cell Combined approach of scRNA-seq and mass cytometry to map cell types in adult mouse muscle
Jean-Baptiste et al. PlantCell 17 2019 Single Cell scRNA-seq of whole roots
Wang et al. CellStemCell 14 2019 Single Cell scRNA-seq of CD45+ dermal immune cells at P45 to identify the source of Oncostatin M as a distinct subset of TRM2+ macrophages
Zilionis et al. Immunity 127 2019 Single Cell scRNA-seq profiling of immune populations in non-small-cell lung cancer patients, and healthy and disease lungs of mouse models
Weng et al. CellStemCell 27 2019 Single Cell scRNA-seq on prospective astrocyte lineage cells and oligodendrocyte progenitor populations from neonatal mouse cortices
Mathys et al. Nature 12 2019 Single Cell Analyses of single-nucleus transcriptomes from the prefrontal cortex of 48 individuals with varying degrees of Alzheimer's disease
Velmeshev et al. Science 34 2019 Single Cell Single-nucleus RNAseq of cortical tissue from patients in autism
Cui et al. CellReports 9 2019 Single Cell Identification of cell types in the human fetal heart
Hill et al. Development 52 2019 Single Cell Study of murine heart development by single-cell RNA-seq of cardiac cells at E10.5 and E13.5 in control and Pitx2 null mouse embryos
Haremaki et al. NatureBiotech 9 2019 Single Cell Recapitulating early human neurulation in neuruloids grown from isogenic Huntington's disease human embryonic stem cells
Ruiz-Garcia et al. Development 18 2019 Single Cell Analysis of single-cell transcriptomes at successive stages during in vitro 3D differentiation of human airway epithelial cells
Xiao et al. GenesDev 32 2019 Single Cell Study of Hippo pathway deletion in adult resting cardiac fibroblasts
Aran et al. NatureImmuno 86 2019 Bulk Aggregated transcript signatures
Uhlen et al. Science 430 2019 Bulk Protein/transcript expression profiles
Jung et al. Elife 12 2019 Single Cell scRNAseq of wild-type and mutant mouse testes
Dulken et al. Nature 10 2019 Single Cell scRNAseq of young and old neurogenic niches in mice
Ayyaz et al. Nature 38 2019 Single Cell Single-cell transcriptomes of the mouse regenerating intestine
Mizrak et al. CellRep 21 2019 Single Cell Elucidation of molecular heterogeneity among adult mouse ventricular-subventricular neural stem cells and niche cells
Loo et al. NatureComm 44 2019 Single Cell Cellular composition of the developing mouse cerebral cortex at embryonic stage and birth
Xu et al. Elife 6 2019 Single Cell Gene expression programs driving mouse mandibular morphogenesis
Combes et al. GenomeMed 18 2019 Single Cell Study of human kidney organoids
Lawlor et al. Elife 16 2019 Single Cell Study of nephron progenitors in mebryonic mouse kidneys using scRNAseq
Lush et al. Elife 14 2019 Single Cell scRNAseq of lateral line organs in zebrafish to study hair cell regeneration
Peng et al. JMCB 8 2019 Single Cell scRNAseq of mouse developing cerebellum
Sohni et al. CellRep 15 2019 Single Cell Analysis of human adult and neonatal testes
Wizeman et al. Elife 20 2019 Single Cell scRNAseq of cerebellar cell types during early neurogenesis of the mouse developing cerebellum
Miragaia et al. Immunity 44 2019 Single Cell Single-cell transcriptomics of regulatory T cells in mouse skin and colon, with associated lymph nodes and spleen
Guerrero-Juarez et al. NatureComm 13 2019 Single Cell Study of wound fibroblast diversity in adult mouse
Pijuan-Sala et al. Nature 31 2019 Single Cell Single-cell atlas of mouse gastrulation and early organogenesis
Cao et al. Nature 38 2019 Single Cell Single-cell transcriptional landscape of mouse organogenesis
Hochane et al. PlosBiol 22 2019 Single Cell scRNAseq of human fetal kidney
Angelidis et al. NatureComm 31 2019 Single Cell Single-cell atlas of mouse aging lung
Guo et al. StemCellRep 23 2019 Single Cell scRNAseq of human embryonic stem cell derived embryoid body in the presence and absence of nicotine
Cheng et al. CellRep 3 2019 Single Cell Reconstruction of developmental trajectory of cells in pre-gastrula mouse embryos
Kumar et al. Development 7 2019 Single Cell Transcriptome analysis of kidney micro-organoids
Fang et al. CellRep 8 2019 Single Cell Analysis of transcriptomes of single islet cells from healthy and type-2 diabetes donors
Guo et al. Development 18 2019 Single Cell Transcriptome profiles of cells from mouse embryonic diencephalon
Mucenski et al. SciRep 27 2019 Single Cell scRNAseq of the mouse developing uterus
DellOrso et al. Development 20 2019 Single Cell scRNAseq of muscle stem cells and primary myoblasts from homeostatic or regenerating mouse hindlimb muscles
Ernst et al. NatureComm 37 2019 Single Cell Profiling spermatogenesis in adult mouse and during juvenile development
Ronning et al. ScientificRep 12 2019 Single Cell scRNAseq of healthy and degenerating mouse retinal immune cells
Grive et al. PlosGenetics 5 2019 Single Cell Profiling gene expression dynamics in male germ cell populations during testis development
Stevant et al. CellRep 4 2019 Single Cell Time series scRNAseq on ovarian somatic cells during sex determination in mouse
Farbehi et al. Elife 35 2019 Single Cell scRNAseq of non-cardiomyocyte fraction and enriched fibroblast lineage cells from mouse hearts at days 3 and 7 post-sham or myocardial infarction surgery
Nowotschin et al. Nature 17 2019 Single Cell Single-cell transcriptomes representing all mouse embryonic endoderm populations until midgestation
Tikhonova et al. Nature 31 2019 Single Cell Mapping the transcriptional landscape of bone marrow vascular, perivascular and osteoblast niche populations at homeostasis and under stress hematopoiesis
Zhang et al. MolPlant 24 2019 Single Cell Arabidopsis root cell atlas
Cosacak et al. CellRep 20 2019 Single Cell Study of neural stem cell heterogeneity and contextual plasticity in adult zebrafish brain
Xue et al. CellRep 9 2019 Single Cell scRNAseq of caudal hematopoietic tissue of zebrafish
Vladoiu et al. Nature 151 2019 Single Cell Study of developing murine cerebellum and childhood cerebellar tumors
Zhang et al. CellRep 17 2019 Single Cell Single-cell transcriptome atlas of gastric antral premalignant and early-malignant mucosae
Telley et al. Science 15 2019 Single Cell Temporal transcriptional profiles of apical progenitors and their daughter neurons in the mouse developing cortex
Voigt et al. ExpEyeRes 18 2019 Single Cell scRNAseq of foveal and peripheral expression in human retina
Shulse et al. CellRep 17 2019 Single Cell Single-cell transcriptome profiling of Arabidopsis roots
Kupari et al. CellRep 24 2019 Single Cell An atlas of vagal sensory neurons
Li et al. Development 26 2019 Single Cell Study of the mouse upper lip and primary palate fusion at single cell resolution
Lewis et al. PNAS 9 2019 Single Cell Analysis of zebrafish leucophores
Lukowski et al. CellRep 4 2019 Single Cell Single-cell transcriptional profiling of aortic endothelium in mouse
vanGurp et al. Development 10 2019 Single Cell Single-cell transcriptomics of the embryonic mouse pancreas
Ponce et al. Development 9 2019 Single Cell scRNA profiling of pancreatic endocrinogenesis in mouse
Pellin et al. NatureComm 7 2019 Single Cell Single cell transcriptional landscape of human hematopoietic progenitors
Lareau et al. NatureBiotech 27 2019 Single Cell Chromatin accessibility of single cells in mouse brain, and resting and stimulated human bone marrow derived cells
Ponzetta et al. Cell 12 2019 Single Cell scRNAseq of sorted mouse sarcoma-infiltrating unconventional alpha-beta T cells
Janiszewska et al. NatureCellBiol 12 2019 Single Cell scRNAseq of CD45+ cells from primary tumors, blood and lungs
Hu et al. PlosBiol 11 2019 Single Cell Transcriptome landscape of human fetal neural retina and retinal pigment epithelium
Peng et al. CellRes 10 2019 Single Cell Transcriptome profile of normal pancreatic and pancreatic ductal adenocarcinoma tumor tissues
Wolock et al. CellRep 7 2019 Single Cell Profiling mouse bone marrow stromal cells
Aizarani et al. Nature 39 2019 Single Cell Adult human liver cell atlas
Polioudakis et al. Neuron 16 2019 Single Cell Single cell expression dataset of the developing human neocortex
McCray et al. AJCEU 10 2019 Single Cell scRNAseq analysis of integrated humnn monolayer primary prostate epithelial cells and three-dimensional prostatic organoids from a single patient
Fan et al. NatureComm 19 2019 Single Cell scRNAseq of whole human adult ovaries
Bossel et al. NatureComm 19 2019 Single Cell scRNAseq of normal and ex-vivo Salmonella infected human peripheral blood cells
deSoysa et al. Nature 44 2019 Single Cell Interrogation of early cardiac progenitor cells using scRNAseq
Hovestadt et al. Nature 10 2019 Single Cell Analysis of intra- and intertumoral heterogeneity in 25 human medulloblastomas
Segal et al. NatureComm 5 2019 Single Cell Analysis of human detal and adult liver
Wirka et al. NatureMed 32 2019 Single Cell Transcriptomic phenotype of modulated vascular smooth muscle cells in vivo in atherosclerotic lesions in mouse and human arteries
Liu et al. CellRep 17 2019 Single Cell scRNAseq of mouse cardiac outflow tract cells from three developmental stages
Culemann et al. Nature 13 2019 Single Cell Transcriptional profiles of resident synovial machrophages in healthy and inflamed joints from mouse
Weinstock et al. Immunometab 15 2019 Single Cell scRNAseq of visceral adipose tissue leukocytes from lean, obese and caloric restriction post obesity mice
LoGiudice et al. Development 14 2019 Single Cell Single cell transcriptomic profile of early-born retinal neurons in mouse
Cheng et al. CellRep 26 2019 Single Cell Transcriptomic profile of hematopoietic stem and progenitor cells from control and m6A methyltransferase Mettl3 conditional knockout mice
Witt et al. Elife 9 2019 Single Cell scRNAseq of Drosophila testis
Min et al. PNAS 2 2019 Single Cell Identification of human adipocyte subtypes using scRNAseq
Huisman et al. NatureComm 12 2019 Single Cell Single cell transcriptome of the developing mouse arcuate nucleus neurons
Zhou et al. Nature 3 2019 Single Cell Transcriptome and DNA methylome of cultured human peri-implantation embryos
Hodge et al. Nature 75 2019 Single Cell Identification of cell types in the human cerebral cortex
Adriaenssens et al. CellMetabolism 6 2019 Single Cell scRNAseq of hypothalamic Gipr-expressing cells
Deng et al. Development 5 2019 Single Cell Single-cell transcriptomic dataset of wild-type Drosophila wing imaginal discs
Yu et al. JASN 31 2019 Single Cell Single-cell transcriptomic map of the human and mouse bladders
Yang et al. NatureComm 12 2019 Single Cell scRNAseq of natural killer cells from human bone marrow and blood
Sharir et al. NatureCellBiol 18 2019 Single Cell Identification of cell types in the mouse incisor epithelium in control and injury recovering cell populations
Packer et al. Science 525 2019 Single Cell Identification of terminal and pre-terminal cell types of C. elegans
Zheng et al. CellRes 8 2019 Single Cell Study of hematopoietic stem cell generation in human embryo
Wilson et al. PNAS 34 2019 Single Cell snRNAseq analysis of early human diabetic nephropathy
Bhattacherjee et al. NatureComm 30 2019 Single Cell Transcriptional profile of cells in mouse prefrontal cortex during adolescence and cocaine addiction
Ximerakis et al. NatureNeuroscience 90 2019 Single Cell Transcriptional profiles of young and old mouse brains
Wang et al. CancerDiscov 5 2019 Single Cell scRNAseq, snRNAseq and scATACseq of proliferating glioblastoma cells from 28 patients
Santos et al. NatureComm 10 2019 Single Cell scRNAseq of proliferating and differentiating mouse urothelial organoids
Jordao et al. Science 26 2019 Single Cell Single-cell profiling of homeostatic and disease associated microglia and macrophages from the central nervous system in mouse
Hammond et al. Immunity 22 2019 Single Cell Microglia in mice during development, old age and after injury
Amiri et al. Science 15 2018 Single Cell snRNAseq of iPSC-derived human telencephalic organoids and isogenic fetal cortex
Wang et al. CellStemCell 14 2018 Single Cell scRNAseq of human testicular cells from donors with normal spermatogenesis and nonobstructive azoospermia
Petitpre et al. NatureComm 8 2018 Single Cell Identification of spiral ganglion neuron types in mouse cochlea
Song et al. ScientificRep 7 2018 Single Cell Study of salivary gland development in mouse
Hu et al. GenesDev 37 2018 Single Cell snRNAseq analysis of postnatal mouse hearts
Byrnes et al. NatureComm 58 2018 Single Cell Murine pancreatic development at single-cell resolution
Wang et al. CellRep 13 2018 Single Cell Molecular profiles of human fetal kidney
Avey et al. CellRep 47 2018 Single Cell Study of cell-type-specific opioid responses by scRNAseq of control and morphine treated mouse nucleus accumbens
Owen et al. NatureComm 7 2018 Single Cell scRNAseq of Barrett's oesophagus and upper gastrointestinal tract
Cheung et al. Endocrinology 8 2018 Single Cell scRNAseq of mouse pituitary glands
MacParland et al. NatureComm 20 2018 Single Cell scRNAseq of human liver
Hermann et al. CellRep 129 2018 Single Cell Single-cell transcriptome of mouse and human spermatogenesis
Ariss et al. NatureComm 15 2018 Single Cell Catalog of Drosophila eye disc cells
Zywitza et al. CellRep 17 2018 Single Cell Cell types in the mouse subventricular zone
Tepe et al. CellRep 56 2018 Single Cell Study of olfactory bulb composition in adult mouse
Kretzschmar et al. PNAS 9 2018 Single Cell Mapping proliferating cells and their progeny in homeostatic and regenrating mouse hearts
Krentz et al. StemCellRep 37 2018 Single Cell Single cell transcriptomes of mouse embryonic pancreas and hESC-derived pancreatic progenitors
Ledergor et al. NatureMed 28 2018 Single Cell Study of plasma cell heterogeneity in symptomatic and asymptomatic myeloma
Li et al. Science 15 2018 Single Cell Integrative model of the human fetal and adult brain
Collin et al. StemCells 9 2018 Single Cell scRNAseq of human pluripotent stem-cell derived retinal organoids
Henry et al. CellRep 9 2018 Single Cell Single-cell atlas of the normal adult human prostate and prostatic urethra
Tabib et al. JID 19 2018 Single Cell scRNAseq of enzymatically digested skin from six healthy control skin samples
Hrvatin et al. NatureNeuroscience 31 2018 Single Cell Activity-dependent transcriptional states in mouse visual cortex
Zemmour et al. NatureImmunology 6 2018 Single Cell Landscape of regulatory T cell phenotypes
Vanlandewijck et al. Nature 15 2018 Single Cell Cell types and zonation in the mouse brain vasculature
Gao et al. NatureCellBiol 40 2018 Single Cell Single cell transcriptome of the human fetal digestive tract
Savas et al. NatureMed 10 2018 Single Cell Single-cell profiling of breast cancer T cells
Guo et al. NatureMed 22 2018 Single Cell Characterization of T-cells in non-small-cell lung cancer by scRNA-seq
Rheaume et al. NatureComm 40 2018 Single Cell Single cell transcriptome profiling of retinal ganglion cells from left and right eyes of mouse
Lindstrom et al. JASN 12 2018 Single Cell scRNAseq of predominantly mesenchymal cell types from the cortical nephrogenic niche of fetal human kidney at week 16
Cochain et al. CircRes 13 2018 Single Cell scRNAseq of leukocyte populations in healthy and atherosclerotic aortas of atherosclerosis-prone mice
Rodda et al. Immunity 9 2018 Single Cell scRNAseq of peripheral lymph node stromal cells from uninfected mice and mice infected with LCMV-Armstrong
Karaiskos et al. JASN 15 2018 Single Cell Transcriptional profiling of mouse glomerular cells
Zuo et al. AJRCCM 3 2018 Single Cell Single-cell transcriptome analysis of human small airway epithelial cells
Kernfeld et al. Immunity 23 2018 Single Cell Single-cell transcriptomic atlas of thymus organogenesis
Steuerman et al. CellSys 9 2018 Single Cell scRNA-seq of immune and non-immune cells from lungs treated with influenza virus
Zeng et al. Cell 22 2018 Single Cell Transcriptome analysis of neoblasts from normal and sub-lethally irradiated Planaria
Burl et al. CellMetabolism 17 2018 Single Cell scRNA-seq of adipose tissue stromal and immune cells
Wu et al. JASN 16 2018 Single Cell Transcriptomic analysis of healthy adult kidney and kidney transplant biopsy
Lambrechts et al. NatureMed 52 2018 Single Cell Stromal cells in the human lung tumor microenvironment
Scavuzzo et al. NatureComm 51 2018 Single Cell Transcriptome profiling of pancreas from mouse embryos
Liu et al. CellResearch 14 2018 Single Cell scRNA-seq of placental cells from first and second trimester human placentas
Fan et al. CellResearch 35 2018 Single Cell Spatial transcriptomic survey of human embryonic cerebral cortex
Nguyen et al. NatureComm 6 2018 Single Cell Transciptome profile of primary human breast epithelial cells
Xie et al. CellReports 2 2018 Single Cell Study of mesenchymal cell subtypes in normal and fibrotic mouse lungs
Sathyamurthy et al. CellReports 50 2018 Single Cell Atlas of adult mouse spinal cord cell types
Wang et al. PNAS 2 2018 Single Cell scRNA-seq of pulmonary alveolar cells from postnatal mouse lungs
Stevant et al. CellReports 6 2018 Single Cell Study of cell lineage specification of gonadal somatic cells during male sex determination
Patil et al. ScienceImmuno 4 2018 Single Cell Single cell transcriptome analysis of circulating human CD4+ cytotoxic T lymphocytes
Skelly et al. CellReports 4 2018 Single Cell Transcriptional profiling of non-myocyte cells in the adult mouse heart
Basak et al. PNAS 9 2018 Single Cell Study of neural stem cells in the adult mouse subependymal zone niche
Saunders et al. Cell 565 2018 Single Cell Identification of cell types from the adult mouse brain
Green et al. DevCell 26 2018 Single Cell Identification of mouse testicular cell types
Shrestha et al. Cell 17 2018 Single Cell Sensory neuron diversity in the inner ear
Sun et al. Cell 5 2018 Single Cell Subtypes of spiral ganglion from mouse inner ear
Menon et al. Development 11 2018 Single Cell Cell type identification in human fetal kidney
Marques et al. DevCell 9 2018 Single Cell Study of transcriptional patterns of oligodendrocyte lineage progenitors during development
Klum et al. EMBOReports 6 2018 Single Cell Transcriptomes of the cell types in developing mouse spinal cord
Jia et al. NatureComm 8 2018 Single Cell Transcription profiles and chromatin accessibility profiles of cardiac progenitor cell transition states
Moffitt et al. Science 66 2018 Single Cell Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region
Vento-Tormo et al. Nature 32 2018 Single Cell Single-cell transcriptional profiling of the early maternal-fetal interface
Jerby-Arnon et al. Cell 1 2018 Single Cell Checkpoint blockade resistance program in melanoma patients
Sade-Feldman et al. Cell 19 2018 Single Cell Immune cell states in melanoma samples from responders and non-responders to checkpoint immunotherapy
Kinchen et al. Cell 38 2018 Single Cell Profiling of mesenchymas cells in human and mouse from normal and diseased colonic tissue
Hook et al. AJHG 13 2018 Single Cell Single-cell RNA-seq analysis of mouse dopaminergic neurons
Boulais et al. Immunity 9 2018 Single Cell Transcription profiles of triple negative CD45- Ter119- CD31- bone marrow cells
Tasic et al. Nature 101 2018 Single Cell Study of cell types from the mouse neocortex
Cao et al. Science 14 2018 Single Cell Chromatin accessibility and gene expression profiles in mouse kidney cells
Spanjaard et al. NatureBiotech 146 2018 Single Cell Study of lineage tracing using genetic scars in zebrafish larvae and adults
Schwalie et al. Nature 7 2018 Single Cell Study of adipogenic stem and precursor cells
Su et al. Nature 4 2018 Single Cell Study of early progenitor cells building coronary arteries
Bornstein et al. Nature 45 2018 Single Cell Study of the stromal compartment of the mouse thymus
Swapna et al. GenomeBiol 11 2018 Single Cell S. mediterranea transcripts by whole-animal scRNA-seq
Konstantinides et al. Cell 51 2018 Single Cell Study of fly optic lobe cells
Zeisel et al. Cell 265 2018 Single Cell Transcriptomes in the mouse nervous system
Ordovas-Montanes et al. Nature 14 2018 Single Cell Transcription patterns of human surgical chronic rhinosinusitis samples and healthy nasaal scrapings
Cohen et al. Cell 260 2018 Single Cell Single-cell transcription profiles and signaling interaction maps during mouse lung development
Azizi et al. Cell 95 2018 Single Cell Study of diverse immune phonetypes in breast tumor from 8 patients
Croset et al. eLIFE 28 2018 Single Cell Cellular diversity in the Drosophila midbrain
Montoro et al. Nature 7 2018 Single Cell Study of adult mouse tracheal epithelial single cells
Plasschaert et al. Nature 18 2018 Single Cell Single-cell atlas of mouse tracheal epithelial cells
Davie et al. Cell 87 2018 Single Cell Transcription patterns of the aging Drosophila brain
TabulaMuris et al. Nature 198 2018 Single Cell Transcription patterns of 20 mouse organs
Cusanovich et al. Cell 85 2018 Single Cell Chromatin accessibility in 13 mouse tissues
Sebe-Pedros et al. Cell 243 2018 Single Cell Adult and larval Cnidarian cell types
Lescroart et al. Science 5 2018 Single Cell Cardiovascular lineage segregation in E6.75 and E7.25 mouse embryos
Dahlin et al. Blood 25 2018 Single Cell Single cell landscape of hematopoietic stem and progenitor cells in WT and Kit mutant mice
Ibarra-Soria et al. NatureCellBiol 26 2018 Single Cell Transcriptomic characterization of E8.25 mouse embryos
Filbin et al. Science 11 2018 Single Cell Study of H3K27M gliomas from 6 patients
Hochgerner et al. NatNeuroscience 8 2018 Single Cell Study of the diversity of cell types in perinatal, juvenile and adult mouse dendate gyrus
Mi et al. Science 16 2018 Single Cell Cortical interneuron diversity in the mouse embryo ganglionic eminences
Alemany et al. Nature 16 2018 Single Cell Transcriptome of hematopoietic cells from kidney marrow, eyes, brain, caudal fin with clone tracing
Dong et al. GenomeBiol 4 2018 Single Cell Analysis of cells from eight organs and tissues of E9.5 to E11.5 mouse embryos
Stephenson et al. NatureComm 13 2018 Single Cell Transcriptional atlas of synovial tissue from rheumatoid arthritis patients
Mayer et al. Nature 3 2018 Single Cell Transcriptomes of mouse embryonic ganglion eminence cells
Zheng et al. MolSysBiol 10 2018 Single Cell Transcriptional compendium of progenitor states in human cord blood
Bergiers et al. eLife 8 2018 Single Cell Study of mouse embryonic hematopoiesis
Carmona et al. GenomeRes 3 2018 Single Cell Analysis of immune cells in zebrafish
Zhong et al. Nature 50 2018 Single Cell Survey of cells in the developing human prefrontal cortex at gestational week 8-26
Han et al. Cell 1061 2018 Single Cell Mouse Cell Altas
Lake et al. NatureBiotech 35 2018 Single Cell Transcriptional states in the human adult brain - visual cotex or visual area, frontal cortex and the lateral hemisphere from 6 individuals post-mortem
Briggs et al. Science 171 2018 Single Cell Dynamics of gene expression in frog embryogenesis
Wagner et al. Science 197 2018 Single Cell Gene expression landscape and lineage in zebrafish embryo
Farrell et al. Science 342 2018 Single Cell Developmental trajectories in wildtype zebrafish at 12 stages (from 3.3 hours to 12 hours post-fertilization) during embryogenesis; Profiling of mutant Mzeop zibrafish at 12 hrs post-fertilization
Fincher et al. Science 408 2018 Single Cell Cell-type atlas of wild type adult planaria at steady state
Plass et al. Science 86 2018 Single Cell Cell-type atlas of wild type adult planaria at steady state and during regeneration
Raj et al. NatureBiotech 155 2018 Single Cell Simultaneous single-cell profiling of lineages and cell types in zebrafish brain
Rosenberg et al. Science 117 2018 Single Cell Profiling of postnatal day 2 and 11 developing mouse brain and spinal cord
Park et al. Science 24 2018 Single Cell Atlas of cell types in mouse kidney
Han et al. GenomeBiol 19 2018 Single Cell Cellular-state landscape of human pluripotent stem cell (hPSC) early differentiation
Shah et al. Cell 9 2018 Single Cell Transcriptomics and fate mapping of ependymal cells reveals an absence of neural stem cell function
Qiu et al. CellMetabolism 6 2017 Single Cell Maturation signatures of mouse pancreatic islet alpha and beta cells
Wallrapp et al. Nature 6 2017 Single Cell Transcriptional profiles of ILC2 cells stimulated with alarmins IL25 and IL33
Artegiani et al. CellReports 9 2017 Single Cell Single-cell sequencing of the dentate gyrus to study adult mouse neurogenesis
Athanasiadis et al. NatureComm 5 2017 Single Cell Reconstruction of blood lineage tree in zebrafish
Bach et al. NatureComm 15 2017 Single Cell Single cell gene expression profiles of mammary epithelial cells in 4 stages of development
Medaglia et al. Science 28 2017 Single Cell Study of spatial distribution of immune cell types in tissue niches using photoactivatable reporters and scRNA-seq
Magella et al. DevBiology 16 2017 Single Cell scRNAseq of whole kidneys of E14.5 mice
Boufaied et al. ScientificRep 4 2017 Single Cell Single-cell trnascriptomics of female rat ventral mesenchymal pad and surrounding urethra
Pal et al. NatureComm 7 2017 Single Cell Analysis of mammary epithelial cells from pre-puberty to adult
Darmanis et al. CellReports 12 2017 Single Cell Analysis of sungle cells of glioblastoma and surrounding peripheral brain tissue from 4 patients
Savage et al. CellReports 5 2017 Single Cell Single cell RNA-seq of breast cancer cells from an exceptional responder to EGFR inhibitor, gefitinib
Honda et al. Elife 6 2017 Single Cell Elucidation of the development of the endolymphatic sac
Paul et al. Cell 7 2017 Single Cell Single cell transcriptome analysis of phenotype characterized GABAergic neurons
Tang et al. JExpMed 17 2017 Single Cell Hematopoietic and renal cell heterogeneity in adult zebrafish
Farmer et al. Development 15 2017 Single Cell Cell types in the developing lacrimal gland in mouse
Yang et al. Cell 27 2017 Single Cell Single-cell RNA-seq to study the heterogeneity within hair follicle progenitors and niches
Wallace et al. Neuron 2 2017 Single Cell Neuronal subtypes in the entopeduncular nucleus of the basal ganglia output region
Gierahn et al. NatureMeth 6 2017 Single Cell Profiling cell types in PBMCs to validate the Seq-Well method
Palicev et al. GenomeRes 8 2017 Single Cell Single cell transcriptomes of cells at the maternal-fetal interface at term
Frazer et al. NatureComm 6 2017 Single Cell Transcriptomics of the 5-HT3aR expressing cortical interneuron subtypes
Spaethling et al. CellReports 5 2017 Single Cell Single cell transcriptomics of cultured live neurosurgically resected adult brain cells
Dulken et al. CellReports 8 2017 Single Cell Transcriptomic analysis of adult neural stem cell lineage
Adam et al. Development 19 2017 Single Cell Molecular atlas of mouse kidney development
Chen et al. CellReports 34 2017 Single Cell Cell type classification in mouse adult hypothalamus
Campbell et al. NatureNeuroscience 89 2017 Single Cell Cell type identification in the arcuate hypothalamus and median eminence
Habib et al. NatureMethods 36 2017 Single Cell Single-nucleus RNA-seq of frozen mouse and human archived brain samples
Keren-Shaul et al. Cell 10 2017 Single Cell Immune cell types in Alzheimer's Disease
Lawlor et al. GenomeRes 7 2017 Single Cell Transcriptomes of human islet cells
Bifari et al. CellStemCell 6 2017 Single Cell Transcription patterns of meningeal cells in newborn mice
Artegiani et al. CellReports 9 2017 Single Cell Single cell analysis of cells in the hippocampal niche of the dentate gyrus
Mathys et al. CellReports 5 2017 Single Cell Single cell analysis of cell states of mouse microglia during neurodegenration
Wen et al. JBC 7 2017 Single Cell Study of post-implantation mouse embryos at E5.5 and E6.5
Chen et al. PNAS 3 2017 Single Cell Transcriptomes of major renal collecting duct cell types in mouse
Li et al. CellStemCell 15 2017 Single Cell Analysis of human fetal germ cells and their gonadal niche cells
Velten et al. NatureCellBiol 5 2017 Single Cell Human haematopoietic stem cell lineage commitment
Halpern et al. Nature 9 2017 Single Cell Spatial transcriptome of mammalian liver
Cao et al. Science 73 2017 Single Cell Single-cell trnscriptional profiling of C. elegans
Lonnberg et al. ScienceImmuno 2 2017 Single Cell Identification of genes associated with the Th1 and Tfh fates in differentiation of naive CD4+ T cells during blodd-stage Plasmodium infection in mice
Wu et al. JEM 3 2017 Single Cell Identification of highly variable genes in activated B-cells to study class switching to IgE
Stoeckius et al. NatureMeth 8 2017 Single Cell Method combining highly multiplexed protein marker detection with unbiased transcriptome profiling of cord blood mononuclear cells (CBMCs)
Yang et al. Nature 2 2017 Single Cell Establishment of mouse expanded potential stem cells
Gerber et al. Oncotarget 3 2017 Single Cell Heterogeneity in patient-derived melanoma cultures
Zheng et al. Cell 11 2017 Single Cell Subtypes in T cells in peripheral blood, liver tumor tissue and adjacent normal liver tissue from hepatocarcinoma patients
Karaiskos et al. Science 11 2017 Single Cell Single-cell spatial transcriptome of the Drosophila embryo
Venteicher et al. Science 5 2017 Single Cell Lineage and microenvironment in isocitrate dehydrogenase-mutant glioma cells
Villani et al. Science 10 2017 Single Cell Subtype identification of ~2400 human blood dendritic cells, monocytes and progenitor cells
Liu et al. Nature 7 2017 Single Cell Global transcriptome changes at early stages during reprogramming of mouse fibroblasts into induced cardiomyocytes (iCM)
Haber et al. Nature 64 2017 Single Cell Survey of small intestinal epithelial cells
Lavin et al. Cell 10 2017 Single Cell Simultaneous single-cell analysis of CD45+ immune non-lymphocyte cells in non small cell lung cancer (NSCLC) tumor and non-involved lung to identify myeloid and NK cell responses unique to tumor lesions
Zheng et al. NatComm 13 2017 Single Cell Identification of immune cell types from peripheral blood mononuclear cells (PMCs)
Olsson et al. Nature 9 2016 Single Cell Analysis of transitional intermediates spanning myelopoiesis
Zeng et al. NAR 6 2016 Single Cell Profiling differentiating human myoblasts
Habib et al. Science 35 2016 Single Cell Analysis of single nuclei from mouse hippocampal snatomical subregions
Moore et al. JExpMed 10 2016 Single Cell Single cell transcriptional analysis of hematopoiesis in zebrafish
Nelson et al. NatureComm 6 2016 Single Cell Cell type-specific transcriptional signatures at the maternal-foetal interface in mouse
Telley et al. Science 7 2016 Single Cell Temporal transcriptional profiles of neural progenitors and neurons in the mouse neurcortex
Engel et al. NatureImmunology 4 2016 Single Cell Transcription profiles of thymic invariant natural killer T cells
Segerstolpe et al. CellMetabolism 6 2016 Single Cell Transciptome profiling of human Pancreatic islets
Xin et al. CellMet 8 2016 Single Cell Single-cell analysis of human islet cells from non-diabetic and Type 2 diabetic donors
Muraro et al. CellSystems 9 2016 Single Cell Single-cell transcriptome atlas of the human pancreas
Hu et al. ScientificRep 6 2016 Single Cell Injury response in three types of dorsal root ganglion sensory neurons
Shekhar et al. Cell 26 2016 Single Cell Classification of mouse retinal bipolar neurons
DeLaughter et al. DevelopmentalCell 3 2016 Single Cell Study of gene expression during murine heart development from E9.5-P21 using 1133 single cells
Scialdone et al. Nature 10 2016 Single Cell Single-cell profiling of early mesoderm
Li et al. EMBORep 7 2016 Single Cell Study of human pancreatic islet cell types
Xin et al. PNAS 2 2016 Single Cell Study of mouse pancreatic islet cell types
Li et al. DevelopmentalCell 8 2016 Single Cell Transcriptomics profiling of mouse embryonic cardiac cells
Grun et al. CellStemCell 136 2016 Single Cell Mouse intestinal and bone marrow, and human adult pancreatic cell type identification
Grover et al. NatComm 2 2016 Single Cell Platelet bias of aged mouse hematopoietic stem cells using scRNA-seq of 52 cells from young mice (2-3 months) and 62 old mice (20-25 months)
Nestorowa et al. Blood 12 2016 Single Cell Map of mouse hematopoietic stem and progenitor cell differentiation
Macaulay et al. CellRep 6 2016 Single Cell Spectrum of differentiation in zebrafish hematopoietic cells from kidney marrow
Yu et al. Nature 12 2016 Single Cell Study of ILC precursor subsets in mouse bone marrow progenitors
Furlan et al. NatNeuroscience 8 2016 Single Cell Heterogeneity of mouse stellate and thoracic ganglia
Romanov et al. NatNeuroscience 105 2016 Single Cell Neuronal subtypes in the mouse hypothalamus
Joost et al. CellSys 31 2016 Single Cell Cell types in mouse telogen epidermis i.e. epidermis and hair follicles
Marques et al. Science 13 2016 Single Cell Heterogeneity in oligodendrocytes in mouse
Tasic et al. NatNeuroscience 49 2016 Single Cell Cell types in the mouse primary visual cortex
Gury-BenAri et al. Cell 15 2016 Single Cell Profiling intestinal innate lymphoid cells from normal mouse intenstine
Bjorklund et al. NatImmuno 4 2016 Single Cell Heterogeneity in human tonsil CD127+ innate lymphoid cells and natural killer cells
Gokce et al. CellRep 21 2016 Single Cell Cell types in mouse striatum
Tirosh et al. Science 9 2016 Single Cell Study of cell types in metastatic melanoma tumors from 19 patients
Treutlein et al. Nature 3 2016 Single Cell Conversion between somatic fates from mouse embryonic fibroblasts to neurons on Ascl1 overexpression - day 0 , 2, 5, 22
Tohonen et al. NatureComm 2 2015 Single Cell Single cell transcriptome during human preimplantation development
Burns et al. NatureComm 6 2015 Single Cell Single-cell RNA-seq of cells in sensory organs from the neonatal inner ear
Moignard et al. NatureBiotech 5 2015 Single Cell Hematopoietic development in mouse embryo by studying cells with blood forming potential at 4 time points between E7.0 and E8.5
Blakeley et al. Development 6 2015 Single Cell Human and mouse blastocyst analysis
Pollen et al. Cell 9 2015 Single Cell Celly types in the human cortex during development
Darmanis et al. PNAS 10 2015 Single Cell Cell diversity in human adult and fetal brain
Usoskin et al. NatNeuroscience 11 2015 Single Cell Classification of mouse sensory neuron types
Avraham et al. Cell 11 2015 Single Cell Heterogeneity in mouse bone marrow-derived macrophages exposed to Salmonella and LPS coated beads
Hanchate et al. Science 4 2015 Single Cell Study the progression of mouse epithelial neurons to olfactory sensory neurons to discover how Olfr gene is selected in each neuron
Tsang et al. GenomeBiol 3 2015 Single Cell Mouse hematopoietic stem cells with Bcl11a (83 normal +52 stringently sorted) and without Bcl11a (82 cells)
Kolodziejczyk et al. CellStemCell 8 2015 Single Cell Mouse ESCs cultered in serum (250 cells);2i (295 cells) and a2i (159 cells)
Grun et al. Nature 31 2015 Single Cell Study of mouse intestinal organoids of epithelial cells
Camp et al. PNAS 6 2015 Single Cell Comparison of the cell heterogeneity in human cerebral organoids and fetal neocortex. Analysis of fetal neocortex cells from 12-13 weeks post conception(wpc)
Lawson et al. Nature 3 2015 Single Cell Study of 441 human metastatic cells and 523 primary tumor cells
Klein et al. Cell 9 2015 Single Cell Heterogeneity in mouse embryonic stem cells
Gaublomme et al. Cell 7 2015 Single Cell Th17 cell pathogenicity progression from from self-renewing in lymph node to less functional in central nervous system in vivo (420 in vitro cells not included in data)
Macosko et al. Cell 39 2015 Single Cell Introduction of Drop-seq. Identification of cell types in mouse retinal cells
Paul et al. Cell 19 2015 Single Cell Heterogeneity in myeloid progenitors - hematopoiesis at single cell resolution
Ting et al. CellReports 1 2014 Single Cell Single-cell RNA sequencing of pancreatic circulating tumor cells
Ohnishi et al. NatureCellBiol 4 2014 Single Cell Epiblast and primitive endoderm lineage segregation within the inner cell mass of the mouse blastocyst at E3.5 and E4.5
Jaitin et al. Science 11 2014 Single Cell Introduction to MARS-Seq;identification of immune cell types of mouse splenic cells enriched for the CD11c surface marker
Pollen et al. NatBiotech 3 2014 Single Cell Testing of single-cell technology using 301 pluripotent;blood;skin and neural cells from human cells line and 65 cells from human developing cortex
Mahata et al. CellRep 2 2014 Single Cell Differentiation of naive T cells to Th2 cells
Treutlein et al. Nature 7 2014 Single Cell Mouse lung lineage markers
Moignard et al. NatureCellBiol 5 2013 Single Cell Study of blood stem and progenitor cells for 18 transcription factors
Shalek et al. Nature 2 2013 Single Cell Study of mouse BMDCs at 4hr after exposure to LPS
Tang et al. CellStemCell 6 2010 Single Cell Study of transition from inner cell mass (ICM) to pluripotent embryonic stem cells (ESCs)
Guo et al. DevCell 3 2010 Single Cell Cell Fate decision prior to implantation
Subramanian et al. PNAS 7693 2005 Bulk Collection of annotated gene sets
DiseaseMarker gene sets
acquired metabolic disease 161
adenocarcinoma 37
age related macular degeneration 14
Alzheimer's disease 10
anemia 11
aortic atherosclerosis 42
arteriosclerosis 42
arteriosclerotic cardiovascular disease 42
artery disease 127
arthritis 13
asthma 94
astrocytoma 30
atherosclerosis 42
atopic dermatitis 2
autism spectrum disorder 2
autoimmune disease of central nervous system 17
autoimmune disease of the nervous system 17
autoimmune hypersensitivity disease 17
autosomal dominant disease 14
autosomal genetic disease 14
bacterial infectious disease 27
benign neoplasm 72
bone cancer 51
bone disease 115
bone inflammation disease 13
bone marrow cancer 44
bone marrow disease 44
brain cancer 152
brain disease 259
breast cancer 127
breast carcinoma 86
breast disease 127
bronchial disease 94
cancer 1107
cannabis abuse 7
carbohydrate metabolism disease 104
carcinoma 176
cardiomyopathy 21
cardiovascular cancer 20
cardiovascular system disease 188
cell type benign neoplasm 7
cell type cancer 333
central nervous system cancer 152
central nervous system disease 468
cerebellar disease 74
cerebellum cancer 74
colitis 82
colon cancer 20
colonic disease 20
colorectal cancer 46
common cold 14
connective tissue cancer 51
connective tissue disease 184
coronary artery disease 22
Coronavirus infectious disease 14
COVID-19 14
Crohn's disease 34
degeneration of macula and posterior pole 14
demyelinating disease 17
dengue disease 4
dermatitis 2
developmental disorder of mental health 2
diabetes mellitus 104
dilated cardiomyopathy 1
disease 4075
disease by infectious agent 101
disease of anatomical entity 2596
disease of cellular proliferation 1179
disease of mental health 22
disease of metabolism 163
drug dependence 9
encephalomyelitis 28
endocrine gland cancer 13
endocrine system disease 25
epilepsy 17
esophageal cancer 35
esophageal disease 35
eye degenerative disease 14
eye disease 88
fatty liver disease 2
female reproductive organ benign neoplasm 65
female reproductive system disease 130
focal epithelial hyperplasia 17
gastrointestinal system cancer 103
gastrointestinal system disease 331
genetic disease 14
glioblastoma mesenchymal subtype 3
glioblastoma multiforme 27
glioblastoma neural subtype 3
glucose metabolism disease 104
heart cancer 20
heart disease 41
hematologic cancer 50
hematopoietic system disease 133
hepatobiliary disease 57
hepatobiliary system cancer 2
hepatocellular carcinoma 2
human immunodeficiency virus infectious disease 12
Huntington's disease 2
hypersensitivity reaction disease 17
hypertension 63
ileitis 34
immune system disease 17
inflammatory bowel disease 116
influenza 9
infratentorial cancer 84
inherited metabolic disorder 2
integumentary system disease 2
interstitial lung disease 18
intestinal cancer 46
intestinal disease 136
intrinsic cardiomyopathy 1
kidney cancer 44
kidney disease 33
kidney failure 22
large intestine cancer 46
leukemia 6
leukocyte disease 28
lipid storage disease 2
liver cancer 2
liver carcinoma 2
liver cirrhosis 55
liver disease 57
lower respiratory tract disease 267
lung adenocarcinoma 27
lung cancer 155
lung carcinoma 126
lung disease 173
lung non-small cell carcinoma 126
lymphocytic choriomeningitis 16
lysosomal storage disease 2
macular degeneration 14
malaria 2
malignant glioma 51
medulloblastoma 10
melanoma 94
monogenic disease 14
morphine dependence 9
multiple myeloma 28
multiple sclerosis 17
musculoskeletal system cancer 51
musculoskeletal system disease 235
myelofibrosis 16
myeloid leukemia 6
myeloid neoplasm 44
myocardial infarction 21
nervous system cancer 182
nervous system disease 738
neurodegenerative disease 29
non-alcoholic fatty liver disease 2
non-alcoholic steatohepatitis 2
nutrition disease 57
obesity 57
ocular cancer 30
oligodendroglioma 3
opiate dependence 9
opioid abuse 4
organ system benign neoplasm 65
organ system cancer 745
overnutrition 57
pancreas disease 25
pancreatic adenocarcinoma 10
pancreatic cancer 11
pancreatic carcinoma 11
pancreatic ductal adenocarcinoma 10
pancreatitis 14
papilloma 7
parasitic infectious disease 2
parasitic protozoa infectious disease 2
pervasive developmental disorder 2
primary bacterial infectious disease 27
proteinuria 11
pulmonary fibrosis 18
reproductive organ benign neoplasm 65
reproductive system disease 195
respiratory system cancer 155
respiratory system disease 445
retinal degeneration 14
retinal disease 14
rheumatoid arthritis 13
salmonellosis 27
sarcoma 12
sensory system cancer 30
sensory system disease 88
skin disease 2
spinal disease 51
stomach cancer 20
subacute myeloid leukemia 6
substance abuse 11
substance dependence 9
substance-related disorder 20
tauopathy 10
thoracic cancer 127
thoracic disease 254
type 1 diabetes mellitus 24
type 2 diabetes mellitus 46
ulcerative colitis 82
upper respiratory tract disease 14
uremia 22
urinary system cancer 44
urinary system disease 33
uterine benign neoplasm 65
uterine disease 65
uterine fibroid 65
uveal cancer 30
uveal disease 30
uveal melanoma 30
vascular disease 127
viral infectious disease 72
Organ-TissueMarker gene sets
2 cell stage 1
2-cell stage embryo 2
4 cell stage 1
4-8 cell stage embryo 1
8 cell stage 1
8-cell stage embryo 1
abdomen blood vessel 5
abdomen connective tissue 57
abdomen element 1427
abdominal lymph node 44
abdominal segment blood vessel 5
abdominal segment connective tissue 57
abdominal segment element 1439
abdominal viscera 167
adenohypophyseal placode 2
adipose tissue 200
adrenal gland 120
adrenal/interrenal gland 120
allantois 3
allocortex 5
alveolar system 14
Ammon's horn 106
amnion 1
amygdala 7
anatomical cavity 2
anatomical cluster 1214
anatomical collection 2
anatomical conduit 808
anatomical junction 6
anatomical line 1
anatomical projection 7
anatomical row 1
anatomical space 54
anatomical surface region 1
anatomical system 361
anlage 21
antenna 1
anterior cingulate cortex 6
anterior definitive endoderm 1
anterior neural tube 8
anterior nuclear group 3
anterior region of body 1
aorta 58
aorta endothelium 4
appendage 14
arachnoid mater 3
archicortex 5
arcuate nucleus of hypothalamus 86
arcuate nucleus of medulla 2
arterial blood vessel 102
arterial system endothelium 4
artery 44
arthropod sensillum 1
ascending colon 11
ascending limb of loop of Henle 1
atrioventricular canal 2
atrioventricular region 5
atypical epithelium 7
autonomic ganglion 8
autopodial extension 62
axon tract 16
basal forebrain 19
basal ganglion 15
basal nucleus of telencephalon 69
bile duct 1
bladder organ 110
blastocyst 5
blastula stage 1
blood 524
blood island 13
blood vessel 254
blood vessel endothelium 9
bodily fluid 543
body of caudate nucleus 3
body proper 146
body wall 3
bone element 89
bone marrow 448
bony plate 5
brachial lymph node 44
brain 2953
brain blood vessel 1
brain commissure 8
brain gray matter 364
brain meninx 1
brain ventricle/choroid plexus 31
brainstem 1
brainstem nucleus 13
branchiomeric muscle 1
breast 141
breast epithelium 7
Brodmann area 49
bronchus 13
brown adipose tissue 13
buccal mucosa 8
CA1 field of hippocampus 9
CA2 field of hippocampus 1
CA3 field of hippocampus 7
calcareous tooth 18
capillary 3
capillary layer of choroid 1
cardiac atrium 12
cardiac chamber 48
cardiac septum 1
cardiac ventricle 14
cardiogenic mesoderm 3
cardiovascular system endothelium 14
cartilage tissue 1
caudal fin 4
caudal ganglionic eminence 4
caudate nucleus 6
cavitated compound organ 852
cell cluster 164
cell cluster organ 62
cell layer 12
central gray substance 1
central gray substance of midbrain 1
central nervous system 250
central nervous system cell part cluster 906
central nervous system gray matter layer 118
central vein of liver 1
cerebellar layer 2
cerebellum 52
cerebral cortex 116
cerebral hemisphere gray matter 193
Cerebral organoid 6
cerebrospinal fluid 17
cervical ganglion 8
chordal neural plate 5
chordamesoderm 1
chorionic villus 19
choroid plexus 31
ciliated columnar epithelium 7
ciliated epithelium 7
circulatory organ 498
circumventricular organ 83
claustrum of brain 1
cochlea 95
collecting duct of renal tubule 11
colon 201
columnar epithelium 76
comma-shaped body 3
commissure of telencephalon 8
compound organ 1418
compound organ component 7
connective tissue 460
coronary artery 25
coronary vessel 27
corpus callosum 4
corpus luteum 3
cortex 5
cortex of hair 1
cortical collecting duct 1
cortical layer II 1
cranial ganglion 28
cranial nerve 2
cranial neural crest 6
cranial neuron projection bundle 2
cranial placode 42
cutaneous appendage 7
cytotrophoblast 3
decidua 43
definitive endoderm 1
dense connective tissue 200
dense irregular connective tissue 200
dense mesenchyme tissue 13
dental epithelium 16
dentate gyrus of hippocampal formation 44
dentate nucleus 1
dentition 1
dermal bone 5
dermal papilla 4
dermal skeletal element 5
dermal skeleton 1
descending limb of loop of Henle 1
descending thin limb 4
developing anatomical structure 2184
diencephalic nucleus 170
diencephalon 6
diffuse reticular nucleus 11
digestive system 28
digestive system duct 2
digestive system element 1063
digestive system gland 470
digestive tract 31
digestive tract epithelium 85
digit 62
distal convoluted tubule 10
distal tubule 6
dorsal ectoderm derivative 1
dorsal epidermis primordium 1
dorsal horn of spinal cord 26
dorsal lateral plate region 6
dorsal ocellus 1
dorsal plus ventral thalamus 54
dorsal region element 164
dorsal root ganglion 18
dorsal telencephalic commissure 4
dorsal thoracic disc 5
dorsolateral placode 10
duct 145
duct of male reproductive system 136
duodenum 22
early embryo 3
early proximal tubule 1
ecto-epithelium 137
ectoderm 10
ectoderm-derived structure 6161
ectodermal placode 52
embryo 117
embryo stage 229
embryoid body 92
embryonic brain 2
embryonic cement gland 2
embryonic structure 1895
embryonic tissue 327
endo-epithelium 39
endocardium 5
endochondral bone 42
endochondral element 84
endocrine gland 833
endoderm 37
endoderm of foregut 1
endoderm-derived structure 1779
endometrial stroma 1
endometrium 9
endothelium 22
endothelium of capillary 2
endothelium of peritubular capillary 2
enteric nervous system 7
entire embryonic mesenchyme 25
enveloping layer of ectoderm 2
epiblast (generic) 39
epibranchial ganglion 24
epibranchial placode 21
epicardium 5
epidermis gland 2
epidermis suprabasal layer 1
epididymis 4
epiphysis 1
epithalamus 1
epithelial furrow 1
epithelial layer of duct 5
epithelial sac 25
epithelial tube 138
epithelial vesicle 116
epithelium 1083
epithelium of crypt of Lieberkuhn 19
epithelium of crypt of Lieberkuhn of small intestine 19
epithelium of female urethra 1
epithelium of mucosa 64
epithelium of small intestine 38
epithelium of urethra 2
epithelium-associated lymphoid tissue 10
esophagus 51
excretory tube 135
exocrine gland 695
exocrine gland of integumental system 196
extensor digitorum longus 6
extensor muscle 6
external ectoderm 3
external female genitalia 1
external genitalia 1
external integument structure 51
external soft tissue zone 147
extraembryonic ectoderm 4
extraembryonic endoderm 5
extraembryonic membrane 4
extraembryonic mesoderm 2
extraembryonic structure 69
extraembryonic tissue 17
extraglomerular mesangium 1
eye 59
eye epithelium 11
eye gland 15
eye primordium 3
eye-antennal disc 15
face 26
facial skeleton 6
fallopian tube 21
fastigial nucleus 1
fat pad 8
female reproductive gland 3
female reproductive organ 155
fenestrated capillary 3
fin 13
floor plate 5
food storage organ 161
forebrain 5
foregut 3
foregut epithelium 1
frontal cortex 81
functional part of brain 64
future central nervous system 10
gall bladder 32
ganglion 62
ganglion of peripheral nervous system 8
ganglionic eminence 6
gastric pit 2
gastrointestinal system epithelium 57
gastrula 3
geniculate placode 1
germ layer 213
germ layer / neural crest 243
germinal center 2
gland 2079
gland of diencephalon 97
gland of digestive tract 13
gland of integumental system 198
gland of ocular region 15
glomerular endothelium 1
glomerular epithelium 1
gonad 396
granular layer of cerebellar cortex 1
gray matter 386
gray matter of diencephalon 6
gray matter of forebrain 344
gray matter of hindbrain 4
gray matter of midbrain 1
gray matter of telencephalon 338
great vessel of heart 58
habenula 11
habenular nucleus 11
haemolymphatic fluid 526
hair follicle 58
hair follicle bulge 10
hair follicle placode 4
hair inner root sheath 7
hair medulla 2
hair outer root sheath 1
hair root sheath 8
hair shaft 5
hatching gland 5
head fold of embryonic disc 1
head kidney 48
head mesenchyme 2
head sensillum 1
heart 498
heart blood vessel 25
heart layer 12
heart left ventricle 9
heart primordium 1
heart right ventricle 4
hematopoietic system 2
hematopoietic tissue 19
hemolymphoid system gland 108
hemopoietic organ 291
hepatic portal vein 1
hepatic sinusoid 3
heterogeneous tissue 33
hindbrain 33
hindbrain nucleus 15
hindgut 4
hindlimb muscle 71
hippocampal field 17
hippocampal formation 12
holocrine gland 2
hypoblast (generic) 10
hypodermis 43
hypothalamic nucleus 86
hypothalamus 141
ileum 59
imaginal disc 20
immaterial anatomical entity 55
immature eye 6
immune organ 433
immune system 51
incisor tooth 18
inferior cervical ganglion 8
infundibulum of hair follicle 1
inguinal lymph node 4
inner cell mass 7
inner cell mass derived hypoblast 9
inner dental epithelium 4
inner nuclear layer of retina 1
inner plexiform layer of retina 1
insect region of integument 1
integumentary adnexa 9
integumentary projection 7
integumentary system layer 47
intercerebral commissure 4
intermediate mesoderm 16
internal ear 28
interstitial tissue 7
interventricular septum 1
intestinal epithelium 57
Intestinal organoid 56
intestine 242
involuting marginal zone 1
irregular connective tissue 200
islet of Langerhans 101
jaw region 1
jejunum 20
kidney 578
kidney epithelium 105
kidney interstitium 7
Kidney organoid 25
kidney pelvis urothelium 3
kidney vasculature 1
lacrimal gland 15
lamina 23
large intestine 26
larva 69
larval stage 76
late embryonic stage 138
lateral ganglionic eminence 1
lateral gland of orbital region 15
lateral globus pallidus 69
lateral habenular nucleus 5
lateral line placode 2
lateral line primordium 2
lateral line system 15
lateral nasal process mesenchyme 2
lateral plate 5
lateral plate mesoderm 4
lateral structure 1650
layer of muscle tissue 9
layer of neocortex 1
layer of retina 16
layer of synovial tissue 26
left cardiac atrium 2
left cardiac chamber 11
lens placode 4
leptomeninx 29
life cycle stage 579
limb mesenchyme 1
limb muscle 89
limiting membrane of retina 1
liver 470
liver blood vessel 4
lobe of cerebral hemisphere 17
long bone 42
loop of Henle 15
lumbar dorsal root ganglion 11
lumbar spinal cord 50
lung 815
lung mesenchyme 8
lymph 2
lymph node 190
lymph node germinal center 1
lymph node medullary sinus 1
lymphoid tissue 14
lymphomyeloid tissue 33
major salivary gland 7
male accessory sex gland 45
male reproductive gland 49
male reproductive organ 227
mammary gland 194
mantle 4
marginal zone of embryo 3
maxillary process mesenchyme 1
mechanoreceptor 4
medial ganglionic eminence 8
medial globus pallidus 35
medial habenular nucleus 6
median eminence of neurohypophysis 74
median fin 4
mediastinal lymph node 6
medulla oblongata 1
medulla of organ 7
membrane bone 5
membrane organ 30
membranous layer 4
meninx 30
mesangium 1
mesenchyme 53
mesenchyme derived from head neural crest 2
mesenchyme derived from neural crest 2
mesenchyme from somatopleure 2
mesenchyme of fronto-nasal process 2
mesenteric lymph node 44
meso-epithelium 68
mesoderm 159
mesoderm-derived structure 2695
mesonephric epithelium 5
mesonephric tubule 5
mesothoracic tergum 1
metanephric cap 8
midbrain 46
midbrain nucleus 61
midbrain tectum 1
midbrain-hindbrain boundary 1
midgut 24
mixed endoderm/mesoderm-derived structure 194
molecular layer of cerebellar cortex 1
morphological feature 7
mouth mucosa 9
mucosa 36
mucosa of oral region 1
multi cell part structure 1074
multi organ part structure 128
multi-tissue structure 1211
multicellular organism 1192
multilaminar epithelium 15
muscle layer of intestine 1
muscle layer of rectum 1
muscle of leg 7
muscle organ 191
muscle structure 261
muscle tissue 4
muscular coat 2
muscular coat of digestive tract 2
musculature 129
musculature of body wall 81
myocardium 7
nasal cavity epithelium 7
nasal cavity mucosa 18
nasolacrimal groove 2
nasopharynx 1
neck of organ 18
neocortex 101
neonate stage 131
nephric duct 4
nephridium 11
nephron 14
nephron epithelium 91
nephron progenitor 6
nephron tubule 95
nerve 2
nerve ending 4
nerve fiber layer of retina 1
nerve of head region 2
nervous system 265
nervous system cell part layer 144
nervous system commissure 8
neural crest 30
neural crest-derived structure 195
neural nucleus 337
neural plate 8
neural tube 2
neural tube basal plate 1
neurectoderm 7
neuroendocrine gland 98
neurogenic placode 36
neurohypophysis 7
neuron projection bundle 20
nociceptor 4
nodosal placode 18
non-material anatomical boundary 1
non-neural ectoderm 1
non-neurogenic ectodermal placode 10
nose epithelium 9
notochord 6
nuclear complex of neuraxis 21
nucleus of brain 337
nucleus of cerebellar nuclear complex 2
nucleus of dorsal thalamus 38
nucleus of medulla oblongata 2
nucleus of thalamus 84
nucleus of ventral thalamus 35
olfactory bulb 59
olfactory epithelium 7
olfactory placode 3
olfactory region 5
omentum 32
optic cup 3
optic vesicle 2
oral gland 12
organ component layer 376
organ part 2211
organ subunit 203
organ system subdivision 501
organism subdivision 258
organism substance 543
Organoid 15
otic placode 5
otolith organ 6
outer dental epithelium 5
outer epithelium 51
outer plexiform layer of retina 1
outer root sheath companion layer 2
outer spiral sulcus 10
outflow tract 5
ovary 154
oviduct 1
paired limb/fin bud mesenchyme 2
pancreas 419
pancreatic duct 1
panniculus adiposus 2
parabrachial nucleus 11
parapharyngeal space 7
pararenal fat 1
parathyroid gland 3
paravertebral ganglion 8
paraxial mesoderm 5
parenchyma 46
parenchyma of central nervous system 26
parietal endoderm 2
pars intermedia of adenohypophysis 7
pars tuberalis of adenohypophysis 7
pectoral appendage bud mesenchyme 2
pelvic appendage muscle 71
pelvic complex muscle 71
pelvic region element 8
perichordal tissue 1
periderm 5
peripharyngeal space 10
peripheral lymph node 13
perivascular space 26
pharyngeal arch system 6
pharyngeal epithelium 1
pharyngeal gland 1
pharyngeal mesoderm 3
pharyngeal muscle 1
pharyngeal pouch 1
pharynx 89
photoreceptor array 262
pigment epithelium of eye 11
pigmented layer of retina 11
pineal body 1
pit 1
pituitary gland 15
placenta 175
pleura 15
pons 5
pore 3
portal vein 1
post-anal tail bud 13
post-embryonic organism 269
posterior neural tube 1
posterior nuclear complex of thalamus 4
posterior region of body 1
postnatal subventricular zone 9
pre-chordal neural plate 5
prechordal plate 4
preoptic area 66
presomitic mesoderm 10
presumptive cephalic mesoderm 1
presumptive retinal pigmented epithelium 2
presumptive structure 64
pretectal nucleus 3
primary circulatory organ 498
primary heart field 2
primary subdivision of skull 6
primary visual cortex 49
primitive knot 4
primitive palate 1
primitive streak 2
primordium 69
processual entity 579
proctodeum 1
profundal placode 2
proliferative region 2
pronephric duct 4
pronephric mesoderm 2
prostate epithelium 10
prostate gland 45
Prostatic organoid 10
protonephridium 11
protuberance 4
proximal convoluted tubule 4
proximal straight tubule 1
proximal tubule 29
proximal-distal subdivision of colon 61
proximo-distal subdivision of respiratory tract 1
pseudostratified ciliated columnar epithelium 7
quadriceps femoris 28
rectum 38
red pulp of spleen 1
regional part of brain 1098
regional part of nervous system 1148
regional part of spinal cord 50
renal connecting tubule 8
renal duct 4
renal glomerulus 16
renal medulla collecting duct 2
renal tubule 95
renal vesicle 4
reproductive gland 52
reproductive organ 810
reproductive structure 1301
reproductive system mucosa 9
respiration organ 815
respiratory airway 20
respiratory system epithelium 8
respiratory system gland 1
respiratory system mucosa 18
respiratory tract epithelium 7
respiratory tube 58
reticuloendothelial system 1
retina 262
Retinal organoid 9
rhombic lip 1
rib 42
rib endochondral element 42
right cardiac atrium 4
right cardiac chamber 8
roof of mouth 1
roof plate 2
root 58
S-shaped body 7
sac 130
saliva-secreting gland 12
sebaceous gland 2
secondary heart field 19
secondary palatal shelf 1
secretory circumventricular organ 83
seminal fluid secreting gland 4
seminal vesicle 4
seminiferous tubule of testis 130
sense organ 68
sensory epithelium 7
sensory ganglion 18
sensory organ epithelium 20
sensory receptor 4
sensory system 15
septum 1
serous membrane 41
sigmoid colon 14
simple columnar epithelium 76
simple squamous epithelium 16
sinus venosus 3
sinusoid 3
skeletal element 191
skeletal muscle organ 188
skeletal tissue 1
skin appendage follicle 58
skin appendage placode 4
skin epidermis 51
skin epithelium 10
skin gland 2
skin of body 160
skin sebaceous gland 1
small intestine 151
smooth muscle tissue 4
soleus muscle 7
somatosensory cortex 15
somite 112
spinal cord 164
spinal cord column 39
spinal cord segment 50
spiral sulcus 10
spleen 135
spleen pulp 2
squamous epithelium 16
stellate reticulum 4
stomach 161
strand of hair 2
stratum basale of epidermis 1
stratum intermedium of tooth 4
striatum 142
stroma 42
structure with developmental contribution from neural crest 1923
subcapsular sinus of lymph node 3
subcommissural organ 1
subcutaneous adipose tissue 44
subdivision of digestive tract 1157
subdivision of head 26
subdivision of oviduct 89
subdivision of skeletal system 6
subdivision of skeleton 26
subdivision of tube 1251
subiculum 1
submandibular gland 7
substantia nigra 61
subthalamic nucleus 35
sulcus 10
superior colliculus 17
surface structure 102
sympathetic ganglion 8
syncytiotrophoblast 1
systemic artery 25
telencephalic nucleus 75
telencephalon 84
temporal lobe 17
tergum 1
testis 227
thalamic complex 2
thick ascending limb of loop of Henle 3
thoracic cavity blood vessel 58
thoracic cavity element 866
thoracic lymph node 6
thoracic segment blood vessel 25
thoracic segment organ 1370
thymus 108
thyroid gland 31
tissue 2492
tongue 7
tonsil 10
tonsil germinal center 1
tooth enamel organ 1
tooth row 1
tooth-like structure 18
torus longitudinalis 2
trachea 45
tracheal mucosa 18
tract of brain 8
transitional anatomical structure 2
transparent eye structure 1
transudate 17
transverse colon 36
trigeminal placode complex 3
trophectoderm 5
trophoblast 8
trunk blood vessel 30
trunk connective tissue 57
trunk ganglion 8
trunk mesoderm derivative 3
trunk region element 3457
tube 500
tunica intima 5
umbilical cord blood 69
unilaminar epithelium 106
upper respiratory tract epithelium 7
upper rhombic lip 1
ureter 8
ureteric bud 2
ureteric bud tip 3
urethra 4
urinary bladder 62
Urothelial organoid 10
urothelium 15
urothelium of ureter 2
uterine cervix 18
uterus 64
utricle of membranous labyrinth 6
vagina 4
vagus X ganglion 24
vas deferens 2
vasa recta descending limb 1
vascular plexus 31
vasculature 103
vasculature of central nervous system 31
vasculature of central nervous system plus retina 31
vasculature of integument 7
vasculature of organ 32
vasculature of trunk 1
vastus lateralis 28
vault of skull 25
vein 2
vein of abdomen 1
venous blood vessel 2
ventral body wall 1
ventral ectoderm derivative 1
ventral epidermis primordium 1
ventral horn of spinal cord 13
ventral part of telencephalon 1
ventral tegmental area 1
ventral thalamus 1
ventral zone 3
ventricular zone 4
vermiform appendix 17
vessel 278
vestibular organ 6
vestibulocochlear ganglion 1
visceral abdominal adipose tissue 57
visceral abdominal lymph node 44
visceral endoderm 4
visceral mesoderm derivative 3
viscus 648
visual processing part of nervous system 68
white adipose tissue 33
white pulp of spleen 1
wing disc 5
zona limitans intrathalamica 1
zone of bone organ 1
zone of long bone 1
zone of organ 162
zone of skin 107
zygote stage 1
OntologyMarker gene sets
abnormal cell 173
absorptive cell 122
acid secreting cell 764
acidophil cell of pars distalis of adenohypophysis 2
acinar cell 44
acinar cell of salivary gland 4
activated CD4-positive, alpha-beta T cell 15
activated CD8-positive, alpha-beta T cell 11
activated CD8-positive, alpha-beta T cell, human 2
activated type II NK T cell 2
adaxial cell 3
adipose microvascular endothelial cell 1
adrenal gland glandular cell 7
adrenal medulla chromaffin cell 1
adrenergic neuron 1
adrenocorticotropic hormone secreting cell 1
adult skeletal muscle myoblast 1
afferent neuron 178
alarm substance cell 4
alpha-beta T cell 424
alternatively activated macrophage 35
alveolar macrophage 5
amacrine cell 38
amine precursor uptake and decarboxylation cell 16
androgen binding protein secreting cell 24
androgen secreting cell 6
antibody secreting cell 4
anucleate cell 4
aortic endothelial cell 6
aortic smooth muscle cell 3
appendix glandular cell 1
arcade cell 6
astrocyte 167
astrocyte of the cerebellum 3
astrocyte of the cerebral cortex 4
astrocyte of the forebrain 1
astrocyte of the spinal cord 1
attachment cell 5
auditory epithelial cell 25
auditory epithelial support cell 24
auditory hair cell 10
autonomic neuron 12
B cell 179
B-2 B cell 4
barrier cell 850
basal cell 69
basal cell of epidermis 3
basal cell of epithelium of bronchus 2
basal cell of prostate epithelium 4
basal cell of urothelium 4
basket cell 1
basophil 21
basophil cell of pars distalis of adenohypophysis 3
basophil mast progenitor cell 4
basophil progenitor cell 3
beige adipocyte 1
Bergmann glial cell 6
biogenic amine secreting cell 107
bipolar neuron 45
bladder cell 4
bladder urothelial cell 2
blastoderm cell 2
blood cell 387
blood vessel endothelial cell 206
Bm4 B cell 10
bone cell 122
bone marrow cell 83
bone marrow hematopoietic cell 53
bone marrow macrophage 11
border cell of cochlea 3
border follicle cell 1
brain macroglial cell 1
brain pericyte 44
branched duct epithelial cell 67
bronchial epithelial cell 22
bronchial smooth muscle cell 2
brown fat cell 4
brush border epithelial cell 143
brush cell 20
brush cell of epithelium proper of large intestine 1
buccal mucosa cell 2
Cajal-Retzius cell 10
camera-type eye photoreceptor cell 22
cap cell 1
capillary endothelial cell 37
carbohydrate secreting cell 33
cardiac blood vessel endothelial cell 7
cardiac endothelial cell 45
cardiac glial cell 1
cardiac mesenchymal cell 8
cardiac muscle cell 80
cardiac muscle myoblast 3
cardiac myoblast 3
cardinal organ part 8
cardinal part of multi-tissue plant structure 8
cardioblast 10
cardiocyte 197
CD115-positive monocyte OR common dendritic progenitor 2
CD14-low, CD16-positive monocyte 5
CD14-positive monocyte 18
CD14-positive, CD16-low monocyte 1
CD14-positive, CD16-negative classical monocyte 2
CD14-positive, CD16-positive monocyte 4
CD141-positive myeloid dendritic cell 1
CD16-negative, CD56-bright natural killer cell 5
CD16-positive myeloid dendritic cell 1
CD16-positive, CD56-dim natural killer cell 15
CD1c-positive myeloid dendritic cell 2
CD34-positive, CD38-negative multipotent progenitor cell 1
CD4-positive helper T cell 3
CD4-positive, alpha-beta cytotoxic T cell 5
CD4-positive, alpha-beta memory T cell 7
CD4-positive, alpha-beta T cell 56
CD4-positive, CD25-positive, alpha-beta regulatory T cell 17
CD4-positive, CD8-intermediate double-positive thymocyte 1
CD56-negative, CD161-positive immature natural killer cell 2
CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor 23
CD8-positive, alpha-beta cytokine secreting effector T cell 2
CD8-positive, alpha-beta cytotoxic T cell 5
CD8-positive, alpha-beta memory T cell 11
CD8-positive, alpha-beta T cell 86
CD94-positive natural killer cell 2
cell of skeletal muscle 45
central memory CD4-positive, alpha-beta T cell 11
central memory CD8-positive, alpha-beta T cell 5
central nervous system macrophage 202
central nervous system neuron 399
central nervous system pericyte 45
central root cap 1
centripetally migrating follicle cell 1
cerebellar granule cell 8
cerebellar neuron 32
cerebellum glutamatergic neuron 2
cerebral cortex endothelial cell 7
cerebral cortex GABAergic interneuron 6
cerebral cortex glial cell 5
cerebral cortex neuron 47
chemoreceptor cell 43
cholangiocyte 12
cholinergic neuron 64
chondrocyte 33
choroid plexus epithelial cell 3
chromaffin cell 16
chromaffin cell of adrenal gland 1
chromophil cell of anterior pituitary gland 5
ciliated cell 253
ciliated cell of the bronchus 2
ciliated columnar cell of tracheobronchial tree 8
ciliated epithelial cell 205
ciliated olfactory receptor neuron 1
circulating cell 6
class switched memory B cell 2
classical monocyte 15
Claudius cell 2
clear cell of eccrine sweat gland 1
club cell 20
CNS interneuron 11
CNS neuron (sensu Nematoda and Protostomia) 6
CNS neuron (sensu Vertebrata) 255
cochlear inner hair cell 3
coelomocyte 6
cold sensing thermoreceptor cell 1
collagen secreting cell 33
colon endothelial cell 2
colon epithelial cell 3
colon glandular cell 2
columella 2
columnar cell of endocervix 1
columnar/cuboidal epithelial cell 328
common lymphoid progenitor 14
common myeloid progenitor 4
common myeloid progenitor, CD34-positive 1
companion cell 1
cone retinal bipolar cell 16
conjunctival epithelial cell 21
connective tissue cell 913
contractile cell 844
conventional dendritic cell 71
copper accumulating cell 1
cortex 7
cortical cell of adrenal gland 6
cortical granule cell 5
cortical thymic epithelial cell 3
corticotroph 1
crypt olfactory receptor neuron 1
crystallin accumulating cell 6
cumulus cell 6
cytotoxic T cell 2
dark cell of eccrine sweat gland 1
decidual cell 5
decidual natural killer cell 5
defensive cell 831
Deiter's cell 3
dendritic cell 309
dendritic cell, human 18
dentate gyrus of hippocampal formation granule cell 2
distal tip cell (sensu Nematoda) 2
DN1 thymic pro-T cell 2
dopaminergic neuron 34
double negative thymocyte 3
duct epithelial cell 126
duodenum glandular cell 1
early embryonic cell 3
early lymphoid progenitor 7
early pro-B cell 1
eccrine cell 2
ecto-epithelial cell 289
ectodermal cell 20
effector CD4-positive, alpha-beta T cell 1
effector memory CD4-positive, alpha-beta T cell 10
effector memory CD8-positive, alpha-beta T cell 18
effector memory CD8-positive, alpha-beta T cell, terminally differentiated 4
effector T cell 2
efferent neuron 24
electrically active cell 7454
electrically responsive cell 4096
electrically signaling cell 3358
elicited macrophage 67
embryonic cell 149
embryonic fibroblast 4
embryonic stem cell 34
endo-epithelial cell 444
endocardial cell 15
endocrine cell 301
endocrine-paracrine cell of prostate gland 4
endodermal cell 28
endodermis 7
endopolyploid cell 58
endorphin secreting cell 8
endothelial cell 780
endothelial cell of artery 51
endothelial cell of coronary artery 6
endothelial cell of hepatic sinusoid 8
endothelial cell of high endothelial venule 1
endothelial cell of lymphatic vessel 36
endothelial cell of sinusoid 8
endothelial cell of vascular tree 342
endothelial cell of venule 3
endothelial cell of viscerocranial mucosa 3
endothelial stalk cell 34
endothelial tip cell 27
enkephalin secreting cell 8
enteric neuron 10
enteric smooth muscle cell 1
enterocyte 121
enterocyte of epithelium of large intestine 5
enterocyte of epithelium of small intestine 36
enteroendocrine cell 134
eosinophil 14
eosinophil progenitor cell 3
ependymal cell 48
epiblast cell 13
epicardial adipocyte 7
epidermal cell 13
epidermal cell 135
epidermal cell (sensu arthropoda) 1
epidermis 1
epidermoblast 1
epididymis glandular cell 1
epithelial cell 4112
epithelial cell of alimentary canal 302
epithelial cell of alveolus of lung 70
epithelial cell of appendix 1
epithelial cell of cervix 3
epithelial cell of distal tubule 7
epithelial cell of esophagus 3
epithelial cell of exocrine pancreas 51
epithelial cell of gall bladder 1
epithelial cell of large intestine 20
epithelial cell of lower respiratory tract 34
epithelial cell of lung 129
epithelial cell of nephron 212
epithelial cell of pancreas 139
epithelial cell of prostate 17
epithelial cell of proximal tubule 20
epithelial cell of skin gland 2
epithelial cell of small intestine 58
epithelial cell of stomach 29
epithelial cell of sweat gland 2
epithelial cell of thymus 40
epithelial cell of thyroid gland 3
epithelial cell of tracheobronchial tree 34
epithelial cell of uterus 8
epithelial fate stem cell 84
erythroblast 55
erythrocyte 44
erythroid lineage cell 207
erythroid progenitor cell 8
erythroid progenitor cell, mammalian 2
excitatory neuron 105
excretory cell 80
exocrine cell 51
extracellular matrix secreting cell 97
extraembryonic cell 73
extravillous trophoblast 12
eye photoreceptor cell 23
fast muscle cell 2
fat cell 40
female germ cell 18
fenestrated cell 17
fetal cardiomyocyte 5
fibroblast 320
fibroblast neural crest derived 1
fibroblast of cardiac tissue 44
fibroblast of connective tissue of prostate 1
fibroblast of dermis 2
fibroblast of lung 47
fibroblast of mammary gland 11
fibrocyte 7
flatworm hypodermal cell 24
follicle stem cell 2
follicular B cell 4
follicular cell of ovary 21
follicular dendritic cell 3
forebrain neuroblast 1
Fraction A pre-pro B cell 2
GABAergic interneuron 26
GABAergic neuron 363
gall bladder glandular cell 1
gamete 4
gamma-delta T cell 10
gamma-delta thymocyte 1
gastric goblet cell 2
gastrin secreting cell 2
general ecto-epithelial cell 145
germ cell 263
germ line cell 318
germ line stem cell 22
germ line stem cell (sensu Vertebrata) 11
germinal center B cell 15
gestational hematopoietic stem cell 4
ghrelin secreting cell 4
glandular cell of endometrium 2
glandular cell of stomach 28
glandular cell of the large intestine 6
glandular epithelial cell 379
glial cell 736
glial cell (sensu Nematoda and Protostomia) 65
glial cell (sensu Vertebrata) 640
glioblast 2
glomerular cell 64
glomerular endothelial cell 15
glomerular visceral epithelial cell 32
glucagon secreting cell 26
glucocorticoid secreting cell 1
glutamatergic neuron 395
glycinergic neuron 1
glycosaminoglycan secreting cell 33
goblet cell 53
gonadtroph 1
granule cell 33
granulocyte 322
granulocyte monocyte progenitor cell 23
granulocytopoietic cell 18
granulosa cell 14
ground tissue cell 3
group 1 innate lymphoid cell 188
group 2 innate lymphoid cell 14
group 2 innate lymphoid cell, mouse 4
group 3 innate lymphoid cell 7
gut absorptive cell 121
gut endothelial cell 3
hair follicle cell 19
hair follicle dermal papilla cell 1
hair follicle dermal papilla cell of scalp 1
haploid cell 78
hatching gland cell 3
heart valve cell 10
helper T cell 3
hemangioblast 3
hematopoietic cell 7960
hematopoietic lineage restricted progenitor cell 66
hematopoietic multipotent progenitor cell 27
hematopoietic oligopotent progenitor cell 57
hematopoietic oligopotent progenitor cell, lineage-negative 23
hematopoietic precursor cell 253
hematopoietic stem cell 75
hemocyte (sensu Nematoda and Protostomia) 4
Hensen cell 3
hepatic pit cell 13
hepatic stellate cell 7
hepatic stem cell 2
hepatocyte 58
hippocampal granule cell 3
hippocampal neuron 14
hippocampal pyramidal neuron 10
histamine secreting cell 77
histaminergic neuron 1
Hofbauer cell 2
hypertrophic chondrocyte 2
hypothalamus native cell 2
IgA plasma cell 1
IgG plasma cell 1
IgM plasma cell 1
ILC1 5
immature B cell 7
immature conventional dendritic cell 1
immature microglial cell 1
immature natural killer cell 1
immature NK T cell 15
immature T cell 17
induced T-regulatory cell 7
inflammatory cell 4
inflammatory macrophage 31
inhibitory interneuron 47
inhibitory neuron 68
initial cell 2
innate lymphoid cell 233
inner cell mass native cell 5
inner phalangeal cell 3
inner renal cortex cell 1
insulating cell 2
insulin secreting cell 30
interdental cell of cochlea 3
interfollicle cell 1
intermediate mesodermal cell 1
intermediate monocyte 6
interneuron 252
interstitial cell of Cajal 2
intestinal crypt stem cell 2
intestinal enteroendocrine cell 18
intestinal epithelial cell 253
intraepithelial lymphocyte 1
ionocyte 11
iron accumulating cell 1
juxtaglomerular complex cell 1
Kenyon cell 6
keratin accumulating cell 42
keratinized cell of hair follicle 2
keratinized cell of the oral mucosa 2
keratinized squamous cell of esophagus 1
keratinizing barrier epithelial cell 42
keratinocyte 41
keratinocyte stem cell 3
kidney blood vessel cell 1
kidney capillary endothelial cell 1
kidney cell 353
kidney collecting duct cell 38
kidney collecting duct epithelial cell 25
kidney collecting duct intercalated cell 13
kidney collecting duct principal cell 10
kidney connecting tubule epithelial cell 1
kidney corpuscule cell 64
kidney cortex collecting duct epithelial cell 2
kidney cortex collecting duct principal cell 2
kidney cortex tubule cell 52
kidney cortical cell 64
kidney distal convoluted tubule epithelial cell 5
kidney epithelial cell 334
kidney interstitial cell 16
kidney loop of Henle ascending limb epithelial cell 3
kidney loop of Henle descending limb epithelial cell 1
kidney loop of Henle epithelial cell 18
kidney medulla cell 4
kidney outer medulla cell 3
kidney proximal convoluted tubule epithelial cell 1
kidney proximal straight tubule epithelial cell 3
kidney tubule cell 107
Kit and Sca1-positive hematopoietic stem cell 2
Kit-positive granulocyte monocyte progenitor 3
Kupffer cell 20
Langerhans cell 8
large intestine goblet cell 5
large luteal cell 1
late pro-B cell 4
lateral root 1
lateral root cap 1
lens epithelial cell 1
lens fiber cell 1
leptomeningeal cell 24
leucophore 4
leukocyte 5415
Leydig cell 34
lining cell 848
liver dendritic cell 1
long term hematopoietic stem cell 1
lower urinary tract cell 6
luminal cell of prostate epithelium 4
luminal epithelial cell of mammary gland 27
lung ciliated cell 2
lung endothelial cell 46
lung goblet cell 1
lung macrophage 90
lung microvascular endothelial cell 1
lung neuroendocrine cell 3
lung secretory cell 35
luteal cell 7
luteinizing hormone secreting cell 1
lymphocyte 2095
lymphocyte of B lineage 461
lymphoid lineage restricted progenitor cell 14
lysozyme secreting cell 27
M cell of gut 3
macroglial cell 364
macrophage 783
male gamete 4
male germ cell 236
male germ line stem cell 11
male germ line stem cell (sensu Vertebrata) 11
mammary alveolar cell 4
mammary gland epithelial cell 34
mammary gland glandular cell 5
mammotroph 1
marginal zone B cell 2
mast cell 76
mast cell progenitor 2
mature alpha-beta T cell 422
mature B cell 47
mature conventional dendritic cell 2
mature microglial cell 7
mature natural killer cell 5
mature neutrophil 1
mature NK T cell 11
mature T cell 578
mechanoreceptor cell 28
medium spiny neuron 50
medullary thymic epithelial cell 34
megakaryocyte 19
megakaryocyte progenitor cell 14
megakaryocyte-erythroid progenitor cell 16
melanocyte 25
melanocyte of skin 10
melanocyte stimulating hormone secreting cell 1
memory B cell 10
memory regulatory T cell 11
memory T cell 94
meristematic cell 2
mesangial cell 6
mesangial phagocyte 5
mesenchymal cell 83
mesenchymal stem cell 31
mesenchymal stem cell of adipose 1
meso-epithelial cell 976
mesodermal cell 47
mesothelial cell 68
metabolising cell 58
metal ion accumulating cell 2
metamyelocyte 1
metanephric mesenchyme stem cell 1
microfold cell of epithelium of small intestine 2
microglial cell 187
microvascular endothelial cell 3
midbrain dopaminergic neuron 1
milk secreting cell 4
mineralocorticoid secreting cell 1
mitogenic signaling cell 3
mitral cell 6
monocyte 290
mononuclear cell 2696
mononuclear cytotrophoblast cell 15
mononuclear phagocyte 10
monopoietic cell 2
motile cell 5414
motor neuron 5
mucosal invariant T cell 6
mucous cell of stomach 9
mucous neck cell 3
mucus neck cell of gastric gland 2
mucus secreting cell 61
Muller cell 10
multi fate stem cell 168
multi-ciliated epithelial cell 10
multi-potent skeletal muscle stem cell 9
multi-tissue plant structure 59
multinucleate cell 35
mural cell 118
muscle cell 678
muscle precursor cell 42
myelin accumulating cell 2
myelinating Schwann cell 2
myelocyte 1
myeloid cell 1842
myeloid dendritic cell 12
myeloid dendritic cell, human 2
myeloid leukocyte 1503
myeloid lineage restricted progenitor cell 49
myoblast 19
myocardial endocrine cell 4
myoepithelial cell 15
myoepithelial cell of lactiferous gland 2
myoepithelial cell of mammary gland 2
myofibroblast cell 34
myotube 6
naive B cell 9
naive regulatory T cell 4
naive T cell 47
naive thymus-derived CD4-positive, alpha-beta T cell 25
naive thymus-derived CD8-positive, alpha-beta T cell 11
native plant cell 18
natural killer cell 183
natural T-regulatory cell 3
neoplastic cell 173
nephrogenic mesenchyme stem cell 4
nephron tubule epithelial cell 52
neural cell 4503
neural crest cell 3
neural progenitor cell 10
neurecto-epithelial cell 106
neuroblast (sensu Vertebrata) 28
neuroendocrine cell 30
neuromast hair cell 3
neuromast mantle cell 2
neuromast support cell 9
neuron 3388
neuron associated cell 867
neuron associated cell (sensu Vertebrata) 131
neuron neural crest derived 10
neuron of cerebral cortex 59
neuron of the forebrain 78
neuronal brush cell 3
neuronal receptor cell 68
neuronal stem cell 42
neuroplacodal cell 2
neutrophil 251
neutrophil progenitor cell 4
nitrergic neuron 3
non-branched duct epithelial cell 25
non-classical monocyte 14
non-hair root epidermal cell 6
non-striated muscle cell 250
non-terminally differentiated cell 103
noradrenergic cell 11
noradrenergic neuron 11
notochordal cell 2
nucleate cell 6292
nucleated thrombocyte 2
olfactory bulb interneuron 11
olfactory bulb tufted cell 6
olfactory granule cell 7
olfactory receptor cell 28
oligodendrocyte 180
oligodendrocyte precursor cell 129
oocyte 14
oral mucosa squamous cell 1
organ of Corti supporting cell 14
osteoblast 17
osteoclast 9
outer hair cell 4
ovarian follicle cell 18
ovarian surface epithelial cell 20
oviduct glandular cell 5
oxygen accumulating cell 44
pain receptor cell 12
pancreas exocrine glandular cell 22
pancreatic A cell 24
pancreatic acinar cell 21
pancreatic centro-acinar cell 1
pancreatic D cell 12
pancreatic ductal cell 28
pancreatic endocrine cell 89
pancreatic epsilon cell 4
pancreatic PP cell 8
pancreatic stellate cell 5
paneth cell 27
paneth cell of epithelium of small intestine 3
parathyroid glandular cell 2
parenchyma 3
parenchyma cell 1
parietal cell 5
parietal epithelial cell 16
peptic cell 5
peptide hormone secreting cell 104
peptidergic neuron 34
pericycle 2
pericycle cell 2
pericyte cell 117
peridermal cell 4
periglomerular cell 3
perineuronal satellite cell 2
peripheral nervous system neuron 12
peripheral neuron 1
peritubular myoid cell 7
perivascular macrophage 10
phagocyte 821
phagocyte (sensu Nematoda and Protostomia) 10
phagocyte (sensu Vertebrata) 10
phalangeal cell 6
phloem 5
phloem pole pericycle cell 1
photoreceptor cell 34
photosynthetic cell 1
pigment cell 51
pillar cell 5
pituicyte 1
pituitary gland cell 8
placental amniotic mesenchymal stromal cell 2
placental hematopoietic stem cell 1
placental villous trophoblast 11
plant anatomical entity 115
plant axis 59
plant cell 18
plant organ 59
plant structure 115
plasma cell 135
plasmablast 4
plasmacytoid dendritic cell 35
plasmacytoid dendritic cell, human 2
platelet 4
pluripotent stem cell 12
pneumocyte 70
podocyte (sensu Diptera) 1
polar body 1
polyploid cell 58
portion of ground tissue 19
portion of meristem tissue 1
portion of plant tissue 30
portion of vascular tissue 7
PP cell 9
pre-natural killer cell 1
preadipocyte 7
preameloblast 2
precursor B cell 12
precursor cell 1163
preosteoblast 1
prickle cell 2
primary neuron 2
primary sensory neuron 2
primitive erythroid lineage cell 71
primitive erythroid progenitor 9
primitive red blood cell 62
primordial germ cell 20
pro-B cell 8
pro-NK cell 1
pro-T cell 2
proerythroblast 3
professional antigen presenting cell 1146
progenitor cell of endocrine pancreas 32
progesterone secreting cell 7
prolactin secreting cell 1
promonocyte 2
prostate gland microvascular endothelial cell 1
prostate stem cell 1
protein secreting cell 137
pulmonary interstitial fibroblast 8
Purkinje cell 19
pyramidal neuron 41
radial glial cell 53
receptor cell 85
rectum glandular cell 1
red muscle cell 1
regular atrial cardiac myocyte 6
regular cardiac myocyte 6
regulatory T cell 73
renal alpha-intercalated cell 3
renal beta-intercalated cell 3
renal cortical epithelial cell 62
renal filtration cell 32
renal intercalated cell 36
renal interstitial pericyte 2
renal principal cell 21
respiratory basal cell 13
respiratory epithelial cell 51
respiratory goblet cell 4
reticular cell 6
reticulocyte 1
retina horizontal cell 12
retinal bipolar neuron 39
retinal blood vessel endothelial cell 4
retinal cell 167
retinal cone cell 11
retinal ganglion cell 59
retinal pigment epithelial cell 12
retinal progenitor cell 9
retinal rod cell 11
rod bipolar cell 3
Rohon-Beard neuron 2
root 59
root cap 1
root cortex 5
root endodermis 2
root epidermal cell 13
root epidermis 1
root hair cell 7
root initial cell 2
root meristem 1
root parenchyma 3
root stele 6
salivary gland cell 1
salivary gland glandular cell 5
Schwann cell 22
Schwann cell precursor 2
seam cell 13
sebaceous gland native cell 2
secondary lymphoid organ macrophage 1
secondary spermatocyte 1
secretory cell 2662
seminal vesicle glandular cell 1
seminiferous tubule epithelial cell 31
sensory epithelial cell 29
sensory hair cell 13
sensory neuron 176
sensory neuron of dorsal root ganglion 2
seromucus secreting cell 61
serotonergic neuron 6
serotonin secreting cell 18
Sertoli cell 24
sheath cell 3
sheath cell (sensu Nematoda) 3
short term hematopoietic stem cell 1
simple columnar epithelial cell 1
single fate stem cell 85
single nucleate cell 1906
skeletal muscle fiber 4
skeletal muscle myoblast 4
skeletal muscle satellite cell 17
skeletal muscle satellite stem cell 1
skin fibroblast 13
Slamf1-negative multipotent progenitor cell 1
Slamf1-positive multipotent progenitor cell 1
slow muscle cell 1
small intestine glandular cell 14
small intestine goblet cell 10
small luteal cell 1
smooth muscle cell 250
smooth muscle cell of prostate 1
smooth muscle cell of the coronary artery 3
smooth muscle myoblast 3
somatic stem cell 191
somatostatin secreting cell 14
somatotroph 1
somatotropin secreting cell 1
specialized cardiac myocyte 4
sperm 4
spermatid 73
spermatocyte 70
spermatogonium 67
spinal cord oligodendrocyte 1
spiral ganglion neuron 30
splenic endothelial cell 1
splenic macrophage 1
splenocyte 3
spongiotrophoblast cell 4
squamous epithelial cell 338
stele 8
stem cell 478
stem cell of epidermis 6
steroid hormone secreting cell 35
stomach enteroendocrine cell 1
stratified epithelial cell 42
stratified squamous epithelial cell 42
stretch receptor cell 1
striated muscle cell 87
stromal cell 387
stromal cell of bone marrow 1
stromal cell of endometrium 2
stromal cell of ovary 19
stuff accumulating cell 776
support cell (sensu Nematoda and Protostomia) 5
support cell (sensu Nematoda) 3
supporting cell of cochlea 23
supportive cell 171
surface mucosal cell of stomach 4
surfactant secreting cell 50
sweat secreting cell 3
sympathetic neuron 1
syncytiotrophoblast cell 6
T cell 1375
T follicular helper cell 10
T-helper 1 cell 11
T-helper 17 cell 22
T-helper 2 cell 6
tanycyte 12
tendon cell 5
terminal Schwann cell 1
testosterone secreting cell 35
theca cell 5
thecogen cell 1
thermoreceptor cell 9
thymocyte 14
thyroid follicular cell 3
thyrotroph 1
tip cell 1
tissue-resident macrophage 247
tonsil germinal center B cell 1
tormogen cell 1
totipotent stem cell 13
touch receptor cell 3
transitional epithelial cell 15
transporting cell 6
trophectodermal cell 5
trophoblast cell 63
trophoblast giant cell 3
type A cell of stomach 2
type A enteroendocrine cell 26
type B pancreatic cell 29
type D cell of stomach 2
type D enteroendocrine cell 14
type EC enteroendocrine cell 6
type G enteroendocrine cell 2
type I cell of adrenal cortex 1
type I NK T cell 7
type I pneumocyte 29
type II cell of adrenal cortex 1
type II muscle cell 1
type II pneumocyte 30
type IIa muscle cell 1
type III cell of adrenal cortex 1
type S enteroendocrine cell 2
urethra cell 2
urothelial cell 13
uterine cervix glandular cell 1
uterine smooth muscle cell 1
valve cell 10
vascular associated smooth muscle cell 97
vein endothelial cell 16
ventricular cardiac muscle cell 1
vertebrate lens cell 4
vestibular dark cell 2
visceral muscle cell 250
visual pigment cell 12
visual system neuron 39
white fat cell 9
xanthophore cell 2
xylem 2
xylem pole pericycle cell 1
yolk sac hematopoietic stem cell 3
Species
  • Homo sapiens (12597)
  • Mus musculus (6785)
  • Danio rerio (956)
  • Caenorhabditis elegans (598)
  • Schmidtea mediterranea (527)
  • Drosophila melanogaster (393)
  • Nematostella vectensis (243)
  • Rattus norvegicus (175)
  • Xenopus tropicalis (171)
  • Arabidopsis thaliana (58)
  • Macaca fascicularis (56)
Publications
  • 2020
    • Stewart et al. Science (80)
    • Guo et al. CellStemCell (20)
    • Wang et al. JExpMed (28)
    • Chen et al. NatureBiotech (41)
    • Liang et al. NatureComm (8)
    • Hung et al. PNAS (22)
    • Ma et al. Cell (171)
    • Kalucka et al. Cell (78)
    • Johnson et al. DevCell (62)
    • Zhang et al. Cell (55)
    • Chen et al. eNeuro (7)
    • Wang et al. NatureCellBiol (15)
    • Slaidina et al. GeneDev (13)
    • Schafflick et al. NatureComm (17)
    • Rubenstein et al. ScientificRep (11)
    • Kim et al. NatureComm (29)
    • Horns et al. CellReports (1)
    • Durante et al. NatureComm (30)
    • Orozco et al. CellReports (11)
    • Zhang et al. NatureComm (25)
    • Wang et al. Cell (31)
    • Sridhar et al. CellReports (23)
    • He et al. JallergyClinImmunol (44)
    • Wallace et al. Elife (22)
    • Wen et al. NatureNeuroscience (21)
    • Vijay et al. NatureMetab (42)
    • vandenBrink et al. Nature (13)
    • Hu et al. ScientificRep (7)
    • Anderson et al. CellReports (69)
    • Batiuk et al. NatureComm (6)
    • Haensel et al. CellReports (29)
    • Lehmann et al. JExpMed (13)
    • Han et al. Nature (1710)
    • Barruet et al. Elife (17)
    • Kazer et al. NatureMed (12)
    • Fujimoto et al. PlosBiol (4)
    • Zakharov et al. JExpMed (24)
    • Smith et al. BloodAdv (20)
    • Cano-Gamez et al. NatureComm (22)
    • Allen et al. Elife (120)
    • Sole-Boldo et al. CommunBiol (17)
    • Jevitt et al. PlosBiol (32)
    • Zhao et al. CellDiscov (34)
    • Qadir et al. PNAS (7)
    • Kim et al. NatureComm (9)
    • Psaila et al. MolCell (17)
    • Liao et al. NatureMed (14)
    • Kolla et al. NatureComm (59)
    • Khrameeva et al. GenomeRes (16)
    • Davidson et al. CellReports (13)
    • Zhao et al. Angiogenesis (5)
    • Karagiannis et al. NatureComm (26)
  • 2019
    • Ramachandran et al. Nature (55)
    • Tran et al. DevCell (20)
    • Popescu et al. Nature (27)
    • Martin et al. Cell (34)
    • Peyser et al. AmJRespirCellMolBiol (17)
    • Hulin et al. Development (18)
    • Neftel et al. Cell (8)
    • Smillie et al. Cell (71)
    • Tibbit et al. Immunity (6)
    • Xiong et al. MolCell (10)
    • Baron et al. Cell (7)
    • Szabo et al. NatureComm (21)
    • Menon et al. NatureComm (21)
    • Kanaya et al. CommunBiol (33)
    • Voigt et al. PNAS (24)
    • Dobbie et al. CellReports (6)
    • Zhao et al. Development (18)
    • Pique-Regi et al. Elife (63)
    • Jones et al. CellStemCell (8)
    • Li et al. Cell (19)
    • Blecher-Gonen et al. CellSystems (16)
    • Kalamakis et al. Cell (9)
    • vanGalen et al. Cell (9)
    • Giordani et al. MolCell (10)
    • Jean-Baptiste et al. PlantCell (17)
    • Wang et al. CellStemCell (14)
    • Zilionis et al. Immunity (127)
    • Weng et al. CellStemCell (27)
    • Mathys et al. Nature (12)
    • Velmeshev et al. Science (34)
    • Cui et al. CellReports (9)
    • Hill et al. Development (52)
    • Haremaki et al. NatureBiotech (9)
    • Ruiz-Garcia et al. Development (18)
    • Xiao et al. GenesDev (32)
    • Aran et al. NatureImmuno (86)
    • Uhlen et al. Science (430)
    • Jung et al. Elife (12)
    • Dulken et al. Nature (10)
    • Ayyaz et al. Nature (38)
    • Mizrak et al. CellRep (21)
    • Loo et al. NatureComm (44)
    • Xu et al. Elife (6)
    • Combes et al. GenomeMed (18)
    • Lawlor et al. Elife (16)
    • Lush et al. Elife (14)
    • Peng et al. JMCB (8)
    • Sohni et al. CellRep (15)
    • Wizeman et al. Elife (20)
    • Miragaia et al. Immunity (44)
    • Guerrero-Juarez et al. NatureComm (13)
    • Pijuan-Sala et al. Nature (31)
    • Cao et al. Nature (38)
    • Hochane et al. PlosBiol (22)
    • Angelidis et al. NatureComm (31)
    • Guo et al. StemCellRep (23)
    • Cheng et al. CellRep (3)
    • Kumar et al. Development (7)
    • Fang et al. CellRep (8)
    • Guo et al. Development (18)
    • Mucenski et al. SciRep (27)
    • DellOrso et al. Development (20)
    • Ernst et al. NatureComm (37)
    • Ronning et al. ScientificRep (12)
    • Grive et al. PlosGenetics (5)
    • Stevant et al. CellRep (4)
    • Farbehi et al. Elife (35)
    • Nowotschin et al. Nature (17)
    • Tikhonova et al. Nature (31)
    • Zhang et al. MolPlant (24)
    • Cosacak et al. CellRep (20)
    • Xue et al. CellRep (9)
    • Vladoiu et al. Nature (151)
    • Zhang et al. CellRep (17)
    • Telley et al. Science (15)
    • Voigt et al. ExpEyeRes (18)
    • Shulse et al. CellRep (17)
    • Kupari et al. CellRep (24)
    • Li et al. Development (26)
    • Lewis et al. PNAS (9)
    • Lukowski et al. CellRep (4)
    • vanGurp et al. Development (10)
    • Ponce et al. Development (9)
    • Pellin et al. NatureComm (7)
    • Lareau et al. NatureBiotech (27)
    • Ponzetta et al. Cell (12)
    • Janiszewska et al. NatureCellBiol (12)
    • Hu et al. PlosBiol (11)
    • Peng et al. CellRes (10)
    • Wolock et al. CellRep (7)
    • Aizarani et al. Nature (39)
    • Polioudakis et al. Neuron (16)
    • McCray et al. AJCEU (10)
    • Fan et al. NatureComm (19)
    • Bossel et al. NatureComm (19)
    • deSoysa et al. Nature (44)
    • Hovestadt et al. Nature (10)
    • Segal et al. NatureComm (5)
    • Wirka et al. NatureMed (32)
    • Liu et al. CellRep (17)
    • Culemann et al. Nature (13)
    • Weinstock et al. Immunometab (15)
    • LoGiudice et al. Development (14)
    • Cheng et al. CellRep (26)
    • Witt et al. Elife (9)
    • Min et al. PNAS (2)
    • Huisman et al. NatureComm (12)
    • Zhou et al. Nature (3)
    • Hodge et al. Nature (75)
    • Adriaenssens et al. CellMetabolism (6)
    • Deng et al. Development (5)
    • Yu et al. JASN (31)
    • Yang et al. NatureComm (12)
    • Sharir et al. NatureCellBiol (18)
    • Packer et al. Science (525)
    • Zheng et al. CellRes (8)
    • Wilson et al. PNAS (34)
    • Bhattacherjee et al. NatureComm (30)
    • Ximerakis et al. NatureNeuroscience (90)
    • Wang et al. CancerDiscov (5)
    • Santos et al. NatureComm (10)
    • Jordao et al. Science (26)
    • Hammond et al. Immunity (22)
  • 2018
    • Amiri et al. Science (15)
    • Wang et al. CellStemCell (14)
    • Petitpre et al. NatureComm (8)
    • Song et al. ScientificRep (7)
    • Hu et al. GenesDev (37)
    • Byrnes et al. NatureComm (58)
    • Wang et al. CellRep (13)
    • Avey et al. CellRep (47)
    • Owen et al. NatureComm (7)
    • Cheung et al. Endocrinology (8)
    • MacParland et al. NatureComm (20)
    • Hermann et al. CellRep (129)
    • Ariss et al. NatureComm (15)
    • Zywitza et al. CellRep (17)
    • Tepe et al. CellRep (56)
    • Kretzschmar et al. PNAS (9)
    • Krentz et al. StemCellRep (37)
    • Ledergor et al. NatureMed (28)
    • Li et al. Science (15)
    • Collin et al. StemCells (9)
    • Henry et al. CellRep (9)
    • Tabib et al. JID (19)
    • Hrvatin et al. NatureNeuroscience (31)
    • Zemmour et al. NatureImmunology (6)
    • Vanlandewijck et al. Nature (15)
    • Gao et al. NatureCellBiol (40)
    • Savas et al. NatureMed (10)
    • Guo et al. NatureMed (22)
    • Rheaume et al. NatureComm (40)
    • Lindstrom et al. JASN (12)
    • Cochain et al. CircRes (13)
    • Rodda et al. Immunity (9)
    • Karaiskos et al. JASN (15)
    • Zuo et al. AJRCCM (3)
    • Kernfeld et al. Immunity (23)
    • Steuerman et al. CellSys (9)
    • Zeng et al. Cell (22)
    • Burl et al. CellMetabolism (17)
    • Wu et al. JASN (16)
    • Lambrechts et al. NatureMed (52)
    • Scavuzzo et al. NatureComm (51)
    • Liu et al. CellResearch (14)
    • Fan et al. CellResearch (35)
    • Nguyen et al. NatureComm (6)
    • Xie et al. CellReports (2)
    • Sathyamurthy et al. CellReports (50)
    • Wang et al. PNAS (2)
    • Stevant et al. CellReports (6)
    • Patil et al. ScienceImmuno (4)
    • Skelly et al. CellReports (4)
    • Basak et al. PNAS (9)
    • Saunders et al. Cell (565)
    • Green et al. DevCell (26)
    • Shrestha et al. Cell (17)
    • Sun et al. Cell (5)
    • Menon et al. Development (11)
    • Marques et al. DevCell (9)
    • Klum et al. EMBOReports (6)
    • Jia et al. NatureComm (8)
    • Moffitt et al. Science (66)
    • Vento-Tormo et al. Nature (32)
    • Jerby-Arnon et al. Cell (1)
    • Sade-Feldman et al. Cell (19)
    • Kinchen et al. Cell (38)
    • Hook et al. AJHG (13)
    • Boulais et al. Immunity (9)
    • Tasic et al. Nature (101)
    • Cao et al. Science (14)
    • Spanjaard et al. NatureBiotech (146)
    • Schwalie et al. Nature (7)
    • Su et al. Nature (4)
    • Bornstein et al. Nature (45)
    • Swapna et al. GenomeBiol (11)
    • Konstantinides et al. Cell (51)
    • Zeisel et al. Cell (265)
    • Ordovas-Montanes et al. Nature (14)
    • Cohen et al. Cell (260)
    • Azizi et al. Cell (95)
    • Croset et al. eLIFE (28)
    • Montoro et al. Nature (7)
    • Plasschaert et al. Nature (18)
    • Davie et al. Cell (87)
    • TabulaMuris et al. Nature (198)
    • Cusanovich et al. Cell (85)
    • Sebe-Pedros et al. Cell (243)
    • Lescroart et al. Science (5)
    • Dahlin et al. Blood (25)
    • Ibarra-Soria et al. NatureCellBiol (26)
    • Filbin et al. Science (11)
    • Hochgerner et al. NatNeuroscience (8)
    • Mi et al. Science (16)
    • Alemany et al. Nature (16)
    • Dong et al. GenomeBiol (4)
    • Stephenson et al. NatureComm (13)
    • Mayer et al. Nature (3)
    • Zheng et al. MolSysBiol (10)
    • Bergiers et al. eLife (8)
    • Carmona et al. GenomeRes (3)
    • Zhong et al. Nature (50)
    • Han et al. Cell (1061)
    • Lake et al. NatureBiotech (35)
    • Briggs et al. Science (171)
    • Wagner et al. Science (197)
    • Farrell et al. Science (342)
    • Fincher et al. Science (408)
    • Plass et al. Science (86)
    • Raj et al. NatureBiotech (155)
    • Rosenberg et al. Science (117)
    • Park et al. Science (24)
    • Han et al. GenomeBiol (19)
    • Shah et al. Cell (9)
  • 2017
    • Qiu et al. CellMetabolism (6)
    • Wallrapp et al. Nature (6)
    • Artegiani et al. CellReports (9)
    • Athanasiadis et al. NatureComm (5)
    • Bach et al. NatureComm (15)
    • Medaglia et al. Science (28)
    • Magella et al. DevBiology (16)
    • Boufaied et al. ScientificRep (4)
    • Pal et al. NatureComm (7)
    • Darmanis et al. CellReports (12)
    • Savage et al. CellReports (5)
    • Honda et al. Elife (6)
    • Paul et al. Cell (7)
    • Tang et al. JExpMed (17)
    • Farmer et al. Development (15)
    • Yang et al. Cell (27)
    • Wallace et al. Neuron (2)
    • Gierahn et al. NatureMeth (6)
    • Palicev et al. GenomeRes (8)
    • Frazer et al. NatureComm (6)
    • Spaethling et al. CellReports (5)
    • Dulken et al. CellReports (8)
    • Adam et al. Development (19)
    • Chen et al. CellReports (34)
    • Campbell et al. NatureNeuroscience (89)
    • Habib et al. NatureMethods (36)
    • Keren-Shaul et al. Cell (10)
    • Lawlor et al. GenomeRes (7)
    • Bifari et al. CellStemCell (6)
    • Artegiani et al. CellReports (9)
    • Mathys et al. CellReports (5)
    • Wen et al. JBC (7)
    • Chen et al. PNAS (3)
    • Li et al. CellStemCell (15)
    • Velten et al. NatureCellBiol (5)
    • Halpern et al. Nature (9)
    • Cao et al. Science (73)
    • Lonnberg et al. ScienceImmuno (2)
    • Wu et al. JEM (3)
    • Stoeckius et al. NatureMeth (8)
    • Yang et al. Nature (2)
    • Gerber et al. Oncotarget (3)
    • Zheng et al. Cell (11)
    • Karaiskos et al. Science (11)
    • Venteicher et al. Science (5)
    • Villani et al. Science (10)
    • Liu et al. Nature (7)
    • Haber et al. Nature (64)
    • Lavin et al. Cell (10)
    • Zheng et al. NatComm (13)
  • 2016
    • Olsson et al. Nature (9)
    • Zeng et al. NAR (6)
    • Habib et al. Science (35)
    • Moore et al. JExpMed (10)
    • Nelson et al. NatureComm (6)
    • Telley et al. Science (7)
    • Engel et al. NatureImmunology (4)
    • Segerstolpe et al. CellMetabolism (6)
    • Xin et al. CellMet (8)
    • Muraro et al. CellSystems (9)
    • Hu et al. ScientificRep (6)
    • Shekhar et al. Cell (26)
    • DeLaughter et al. DevelopmentalCell (3)
    • Scialdone et al. Nature (10)
    • Li et al. EMBORep (7)
    • Xin et al. PNAS (2)
    • Li et al. DevelopmentalCell (8)
    • Grun et al. CellStemCell (136)
    • Grover et al. NatComm (2)
    • Nestorowa et al. Blood (12)
    • Macaulay et al. CellRep (6)
    • Yu et al. Nature (12)
    • Furlan et al. NatNeuroscience (8)
    • Romanov et al. NatNeuroscience (105)
    • Joost et al. CellSys (31)
    • Marques et al. Science (13)
    • Tasic et al. NatNeuroscience (49)
    • Gury-BenAri et al. Cell (15)
    • Bjorklund et al. NatImmuno (4)
    • Gokce et al. CellRep (21)
    • Tirosh et al. Science (9)
    • Treutlein et al. Nature (3)
  • 2015
    • Tohonen et al. NatureComm (2)
    • Burns et al. NatureComm (6)
    • Moignard et al. NatureBiotech (5)
    • Blakeley et al. Development (6)
    • Pollen et al. Cell (9)
    • Darmanis et al. PNAS (10)
    • Usoskin et al. NatNeuroscience (11)
    • Avraham et al. Cell (11)
    • Hanchate et al. Science (4)
    • Tsang et al. GenomeBiol (3)
    • Kolodziejczyk et al. CellStemCell (8)
    • Grun et al. Nature (31)
    • Camp et al. PNAS (6)
    • Lawson et al. Nature (3)
    • Klein et al. Cell (9)
    • Gaublomme et al. Cell (7)
    • Macosko et al. Cell (39)
    • Paul et al. Cell (19)
  • 2014
    • Ting et al. CellReports (1)
    • Ohnishi et al. NatureCellBiol (4)
    • Jaitin et al. Science (11)
    • Pollen et al. NatBiotech (3)
    • Mahata et al. CellRep (2)
    • Treutlein et al. Nature (7)
  • 2013
    • Moignard et al. NatureCellBiol (5)
    • Shalek et al. Nature (2)
  • 2010
    • Tang et al. CellStemCell (6)
    • Guo et al. DevCell (3)
  • 2005
    • Subramanian et al. PNAS (7693)
Diseases
  • disease (4075)
    • disease by infectious agent (101)
      • bacterial infectious disease (27)
        • primary bacterial infectious disease (27)
          • salmonellosis (27)
      • parasitic infectious disease (2)
        • parasitic protozoa infectious disease (2)
          • malaria (2)
      • viral infectious disease (72)
        • Coronavirus infectious disease (14)
          • COVID-19 (14)
        • dengue disease (4)
        • focal epithelial hyperplasia (17)
        • human immunodeficiency virus infectious disease (12)
        • influenza (9)
        • lymphocytic choriomeningitis (16)
    • disease of anatomical entity (2596)
      • cardiovascular system disease (188)
        • cardiovascular cancer (20)
          • heart cancer (20)
        • heart disease (41)
          • cardiomyopathy (21)
            • intrinsic cardiomyopathy (1)
              • dilated cardiomyopathy (1)
          • heart cancer (20)
        • vascular disease (127)
          • artery disease (127)
            • arteriosclerosis (42)
              • arteriosclerotic cardiovascular disease (42)
                • atherosclerosis (42)
                  • aortic atherosclerosis (42)
            • coronary artery disease (22)
              • myocardial infarction (21)
            • hypertension (63)
      • endocrine system disease (25)
        • pancreas disease (25)
          • pancreatic cancer (11)
            • pancreatic carcinoma (11)
              • pancreatic adenocarcinoma (10)
                • pancreatic ductal adenocarcinoma (10)
          • pancreatitis (14)
      • gastrointestinal system disease (331)
        • esophageal disease (35)
          • esophageal cancer (35)
        • gastrointestinal system cancer (103)
          • esophageal cancer (35)
          • hepatobiliary system cancer (2)
            • liver cancer (2)
              • liver carcinoma (2)
                • hepatocellular carcinoma (2)
          • intestinal cancer (46)
            • large intestine cancer (46)
              • colorectal cancer (46)
                • colon cancer (20)
          • stomach cancer (20)
        • hepatobiliary disease (57)
          • liver disease (57)
            • liver cancer (2)
              • liver carcinoma (2)
                • hepatocellular carcinoma (2)
            • liver cirrhosis (55)
        • intestinal disease (136)
          • colonic disease (20)
            • colon cancer (20)
          • inflammatory bowel disease (116)
            • Crohn's disease (34)
              • ileitis (34)
            • colitis (82)
              • ulcerative colitis (82)
      • hematopoietic system disease (133)
        • anemia (11)
        • bone marrow disease (44)
          • bone marrow cancer (44)
            • myeloid neoplasm (44)
              • multiple myeloma (28)
              • myelofibrosis (16)
        • hematologic cancer (50)
          • bone marrow cancer (44)
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