CellKb

Species	Marker gene sets
Homo sapiens	12597
Mus musculus	6785
Danio rerio	956
Caenorhabditis elegans	598
Schmidtea mediterranea	527
Drosophila melanogaster	393
Nematostella vectensis	243
Rattus norvegicus	175
Xenopus tropicalis	171
Arabidopsis thaliana	58
Macaca fascicularis	56

Publication	Marker gene sets	Year	Type	Description
Stewart et al. Science	80	2020	Single Cell	Global immune landscape of the human kidney
Guo et al. CellStemCell	20	2020	Single Cell	Transcriptional cell atlas of testis development during human puberty
Wang et al. JExpMed	28	2020	Single Cell	Single-cell transcriptome analysis of human intestine
Chen et al. NatureBiotech	41	2020	Single Cell	Single cell sequencing of the transcriptome and chromatin accessibility in the same cell
Liang et al. NatureComm	8	2020	Single Cell	Transcriptome profiling of human retinal tissue
Hung et al. PNAS	22	2020	Single Cell	A cell atlas of the adult Drosophila midgut
Ma et al. Cell	171	2020	Single Cell	Single-cell transcriptomic atlas for aging and calorific restriction in rat
Kalucka et al. Cell	78	2020	Single Cell	Single-cell transcriptome atlas os murine endothelial cells
Johnson et al. DevCell	62	2020	Single Cell	Atlas of the cell types participating in mouse digit tip regeneration
Zhang et al. Cell	55	2020	Single Cell	scRNA-seq analyses on immune and stromal populations from colorectal cancer patients
Chen et al. eNeuro	7	2020	Single Cell	Single-cell molecular profiling of the mouse neurohypophysis
Wang et al. NatureCellBiol	15	2020	Single Cell	Transcriptional profiling of single cells from normal, failed and partially recovered adult human hearts
Slaidina et al. GeneDev	13	2020	Single Cell	scRNA-seq of developing Drosophila ovaries
Schafflick et al. NatureComm	17	2020	Single Cell	Single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis
Rubenstein et al. ScientificRep	11	2020	Single Cell	Single-cell transciptional profiles in human skeletal muscle
Kim et al. NatureComm	29	2020	Single Cell	Single-cell analysis of gastrointestinal stromal cells in mouse
Horns et al. CellReports	1	2020	Single Cell	Memory B cell activation in response to influenza vaccination
Durante et al. NatureComm	30	2020	Single Cell	Study of tumor microenvironment in uveal melanoma at single-cell resolution
Orozco et al. CellReports	11	2020	Single Cell	Single-cell characterization of uman retina and retinal pigment epithelium
Zhang et al. NatureComm	25	2020	Single Cell	Single-cell transcriptomic survey or aortas and coronary arteries in young and old non-primate humans
Wang et al. Cell	31	2020	Single Cell	Single-cell transcriptomic landscape of ovaries from young and aged non-human primates
Sridhar et al. CellReports	23	2020	Single Cell	Study of human retinal development using scRNA-seq and comparison with development of retinal organoids
He et al. JallergyClinImmunol	44	2020	Single Cell	Atlas of cell populations in atopic dermatitis and healthy skin cells
Wallace et al. Elife	22	2020	Single Cell	Characterization of the cells of the mouse habenula
Wen et al. NatureNeuroscience	21	2020	Single Cell	Single-cell analysis of the basic cell types in the mouse suprachiasmatic nucleus
Vijay et al. NatureMetab	42	2020	Single Cell	Human single-cell transcriptome atlas acess fat depots
vandenBrink et al. Nature	13	2020	Single Cell	Study of mouse gastruloids using scRNA-seq
Hu et al. ScientificRep	7	2020	Single Cell	Effect of delta-9-tetrahydrocannabinol on human peripheral blood cells
Anderson et al. CellReports	69	2020	Single Cell	Examination of the contribution of Foxp1 to striatal development in mouse
Batiuk et al. NatureComm	6	2020	Single Cell	Investigation of astrocyte molecular diversityy across mouse forebrain regions using scRNA-seq
Haensel et al. CellReports	29	2020	Single Cell	Study of epidermal basal cell states during skin homeostasis and wound healing
Lehmann et al. JExpMed	13	2020	Single Cell	Study of mouse retinal pigment epithelium/choroid cell types using scRNA-seq
Han et al. Nature	1710	2020	Single Cell	Human cell landscape at single-cell levels
Barruet et al. Elife	17	2020	Single Cell	scRNA-seq of human satellite cells from vasti lateralis muscle
Kazer et al. NatureMed	12	2020	Single Cell	Single-cell analysis of immune dynamics during hyperacute HIV-1 infection
Fujimoto et al. PlosBiol	4	2020	Single Cell	Transcriptome of lymphatic endothelial cells in murine skin-draining lymph nodes
Zakharov et al. JExpMed	24	2020	Single Cell	Study of cellular complexity in murine islet cells at all stages of autoimmune diabetes
Smith et al. BloodAdv	20	2020	Single Cell	scRNA-seq of NK cells in unstimulated and IL2-activated cells from healthy donors
Cano-Gamez et al. NatureComm	22	2020	Single Cell	Single-cell transcriptomics of naive and memory CD4+ T cells in resting and stimulated state
Allen et al. Elife	120	2020	Single Cell	Single cell atlas of adult Drosophila ventral nerve cord
Sole-Boldo et al. CommunBiol	17	2020	Single Cell	scRNA-seq of sun-protected human skin
Jevitt et al. PlosBiol	32	2020	Single Cell	Single-cell atlas of adult Drosophila ovary
Zhao et al. CellDiscov	34	2020	Single Cell	Study of human liver resident immune cells using scRNA-seq
Qadir et al. PNAS	7	2020	Single Cell	scRNA-seq of human pancreatic ductal cells
Kim et al. NatureComm	9	2020	Single Cell	Study of lung adenocarcinoma using scRNA-seq
Psaila et al. MolCell	17	2020	Single Cell	Single-cell transcriptome profiling of CD34+ lineage- hematopoietic stem and progenitor cells from healthy controls and patients with myelofibrosis
Liao et al. NatureMed	14	2020	Single Cell	Atlas of bronchoalveolar immune cells from patients with varying severity of COVID-19
Kolla et al. NatureComm	59	2020	Single Cell	Transcriptional profile of isolated mouse cochlear cells collected at four developmental time points
Khrameeva et al. GenomeRes	16	2020	Single Cell	snRNAseq of 3 anatomical regions of human, chimpanzee, bonobo and macaque brains
Davidson et al. CellReports	13	2020	Single Cell	scRNA-seq used to demonstrate the increasing heterogeneity within the stroma as a tumor develops
Zhao et al. Angiogenesis	5	2020	Single Cell	scRNA-seq of liver endothelial cells in mouse
Karagiannis et al. NatureComm	26	2020	Single Cell	Using scRNA-seq to characterize cell-type specific gene expression in the peripheral immune system of opioid-dependent individuals compared to non-dependent controls
Ramachandran et al. Nature	55	2019	Single Cell	Transcriptional profiles of single cells from healthy and cirrhotic human liver
Tran et al. DevCell	20	2019	Single Cell	Understanding human podocyte development using scRNA-seq
Popescu et al. Nature	27	2019	Single Cell	Single-cell transcriptome profiling of human liver, skin, kidney and yolk sac cells
Martin et al. Cell	34	2019	Single Cell	scRNA-seq of ileal Crohn's disease lesions
Peyser et al. AmJRespirCellMolBiol	17	2019	Single Cell	scRNA-seq of a bleomycin-induced pulmonary fibrosis mouse model
Hulin et al. Development	18	2019	Single Cell	An atlas of heart valve cell diversity
Neftel et al. Cell	8	2019	Single Cell	scRNA-seq of gliobastoma tumors
Smillie et al. Cell	71	2019	Single Cell	Atlas of single cells from the colon mucosa of ulcerative colitis patients and healthy individuals
Tibbit et al. Immunity	6	2019	Single Cell	scRNA-seq of T helper cell response to house dust mites
Xiong et al. MolCell	10	2019	Single Cell	scRNA-seq of non-parenchymal cells from healthy and nonalcoholic steatohepatitis mouse livers
Baron et al. Cell	7	2019	Single Cell	scRNA-seq of whole kidney marrow in zebrafish
Szabo et al. NatureComm	21	2019	Single Cell	Single-cell transcriptomics of resting and actived human T cells
Menon et al. NatureComm	21	2019	Single Cell	Single-cell transcriptomic atlas of the human retina
Kanaya et al. CommunBiol	33	2019	Single Cell	Effect of estrogen and polybrominated diphenyl ethers on mammary tissue during menopause in mouse
Voigt et al. PNAS	24	2019	Single Cell	Single-cell transcriptomics of the human retinal pigment epithelium and choroid
Dobbie et al. CellReports	6	2019	Single Cell	scRNA-seq to study the hepatic mesenchyme in healthy and fibrotic mouse liver
Zhao et al. Development	18	2019	Single Cell	Single cell transcriptome of hemangiogenic differentiation in mouse
Pique-Regi et al. Elife	63	2019	Single Cell	Single cell transcriptional signatures of the human placenta in term and preterm parturition
Jones et al. CellStemCell	8	2019	Single Cell	Study of the diversity of cell types in the oral mucosal basal layer in mouse
Li et al. Cell	19	2019	Single Cell	Transcriptional profiling of intratumoral immune infiltrates of 25 melanoma patients
Blecher-Gonen et al. CellSystems	16	2019	Single Cell	Identification of cell types using scRNA-seq in pathogen-challenged mouse lymph nodes
Kalamakis et al. Cell	9	2019	Single Cell	Single-cell transcriptomics of neural stem cell in young and aging murine brain
vanGalen et al. Cell	9	2019	Single Cell	A combination of transcriptomics and mutational analyses in single cells from acute myeloid leukemia patients
Giordani et al. MolCell	10	2019	Single Cell	Combined approach of scRNA-seq and mass cytometry to map cell types in adult mouse muscle
Jean-Baptiste et al. PlantCell	17	2019	Single Cell	scRNA-seq of whole roots
Wang et al. CellStemCell	14	2019	Single Cell	scRNA-seq of CD45+ dermal immune cells at P45 to identify the source of Oncostatin M as a distinct subset of TRM2+ macrophages
Zilionis et al. Immunity	127	2019	Single Cell	scRNA-seq profiling of immune populations in non-small-cell lung cancer patients, and healthy and disease lungs of mouse models
Weng et al. CellStemCell	27	2019	Single Cell	scRNA-seq on prospective astrocyte lineage cells and oligodendrocyte progenitor populations from neonatal mouse cortices
Mathys et al. Nature	12	2019	Single Cell	Analyses of single-nucleus transcriptomes from the prefrontal cortex of 48 individuals with varying degrees of Alzheimer's disease
Velmeshev et al. Science	34	2019	Single Cell	Single-nucleus RNAseq of cortical tissue from patients in autism
Cui et al. CellReports	9	2019	Single Cell	Identification of cell types in the human fetal heart
Hill et al. Development	52	2019	Single Cell	Study of murine heart development by single-cell RNA-seq of cardiac cells at E10.5 and E13.5 in control and Pitx2 null mouse embryos
Haremaki et al. NatureBiotech	9	2019	Single Cell	Recapitulating early human neurulation in neuruloids grown from isogenic Huntington's disease human embryonic stem cells
Ruiz-Garcia et al. Development	18	2019	Single Cell	Analysis of single-cell transcriptomes at successive stages during in vitro 3D differentiation of human airway epithelial cells
Xiao et al. GenesDev	32	2019	Single Cell	Study of Hippo pathway deletion in adult resting cardiac fibroblasts
Aran et al. NatureImmuno	86	2019	Bulk	Aggregated transcript signatures
Uhlen et al. Science	430	2019	Bulk	Protein/transcript expression profiles
Jung et al. Elife	12	2019	Single Cell	scRNAseq of wild-type and mutant mouse testes
Dulken et al. Nature	10	2019	Single Cell	scRNAseq of young and old neurogenic niches in mice
Ayyaz et al. Nature	38	2019	Single Cell	Single-cell transcriptomes of the mouse regenerating intestine
Mizrak et al. CellRep	21	2019	Single Cell	Elucidation of molecular heterogeneity among adult mouse ventricular-subventricular neural stem cells and niche cells
Loo et al. NatureComm	44	2019	Single Cell	Cellular composition of the developing mouse cerebral cortex at embryonic stage and birth
Xu et al. Elife	6	2019	Single Cell	Gene expression programs driving mouse mandibular morphogenesis
Combes et al. GenomeMed	18	2019	Single Cell	Study of human kidney organoids
Lawlor et al. Elife	16	2019	Single Cell	Study of nephron progenitors in mebryonic mouse kidneys using scRNAseq
Lush et al. Elife	14	2019	Single Cell	scRNAseq of lateral line organs in zebrafish to study hair cell regeneration
Peng et al. JMCB	8	2019	Single Cell	scRNAseq of mouse developing cerebellum
Sohni et al. CellRep	15	2019	Single Cell	Analysis of human adult and neonatal testes
Wizeman et al. Elife	20	2019	Single Cell	scRNAseq of cerebellar cell types during early neurogenesis of the mouse developing cerebellum
Miragaia et al. Immunity	44	2019	Single Cell	Single-cell transcriptomics of regulatory T cells in mouse skin and colon, with associated lymph nodes and spleen
Guerrero-Juarez et al. NatureComm	13	2019	Single Cell	Study of wound fibroblast diversity in adult mouse
Pijuan-Sala et al. Nature	31	2019	Single Cell	Single-cell atlas of mouse gastrulation and early organogenesis
Cao et al. Nature	38	2019	Single Cell	Single-cell transcriptional landscape of mouse organogenesis
Hochane et al. PlosBiol	22	2019	Single Cell	scRNAseq of human fetal kidney
Angelidis et al. NatureComm	31	2019	Single Cell	Single-cell atlas of mouse aging lung
Guo et al. StemCellRep	23	2019	Single Cell	scRNAseq of human embryonic stem cell derived embryoid body in the presence and absence of nicotine
Cheng et al. CellRep	3	2019	Single Cell	Reconstruction of developmental trajectory of cells in pre-gastrula mouse embryos
Kumar et al. Development	7	2019	Single Cell	Transcriptome analysis of kidney micro-organoids
Fang et al. CellRep	8	2019	Single Cell	Analysis of transcriptomes of single islet cells from healthy and type-2 diabetes donors
Guo et al. Development	18	2019	Single Cell	Transcriptome profiles of cells from mouse embryonic diencephalon
Mucenski et al. SciRep	27	2019	Single Cell	scRNAseq of the mouse developing uterus
DellOrso et al. Development	20	2019	Single Cell	scRNAseq of muscle stem cells and primary myoblasts from homeostatic or regenerating mouse hindlimb muscles
Ernst et al. NatureComm	37	2019	Single Cell	Profiling spermatogenesis in adult mouse and during juvenile development
Ronning et al. ScientificRep	12	2019	Single Cell	scRNAseq of healthy and degenerating mouse retinal immune cells
Grive et al. PlosGenetics	5	2019	Single Cell	Profiling gene expression dynamics in male germ cell populations during testis development
Stevant et al. CellRep	4	2019	Single Cell	Time series scRNAseq on ovarian somatic cells during sex determination in mouse
Farbehi et al. Elife	35	2019	Single Cell	scRNAseq of non-cardiomyocyte fraction and enriched fibroblast lineage cells from mouse hearts at days 3 and 7 post-sham or myocardial infarction surgery
Nowotschin et al. Nature	17	2019	Single Cell	Single-cell transcriptomes representing all mouse embryonic endoderm populations until midgestation
Tikhonova et al. Nature	31	2019	Single Cell	Mapping the transcriptional landscape of bone marrow vascular, perivascular and osteoblast niche populations at homeostasis and under stress hematopoiesis
Zhang et al. MolPlant	24	2019	Single Cell	Arabidopsis root cell atlas
Cosacak et al. CellRep	20	2019	Single Cell	Study of neural stem cell heterogeneity and contextual plasticity in adult zebrafish brain
Xue et al. CellRep	9	2019	Single Cell	scRNAseq of caudal hematopoietic tissue of zebrafish
Vladoiu et al. Nature	151	2019	Single Cell	Study of developing murine cerebellum and childhood cerebellar tumors
Zhang et al. CellRep	17	2019	Single Cell	Single-cell transcriptome atlas of gastric antral premalignant and early-malignant mucosae
Telley et al. Science	15	2019	Single Cell	Temporal transcriptional profiles of apical progenitors and their daughter neurons in the mouse developing cortex
Voigt et al. ExpEyeRes	18	2019	Single Cell	scRNAseq of foveal and peripheral expression in human retina
Shulse et al. CellRep	17	2019	Single Cell	Single-cell transcriptome profiling of Arabidopsis roots
Kupari et al. CellRep	24	2019	Single Cell	An atlas of vagal sensory neurons
Li et al. Development	26	2019	Single Cell	Study of the mouse upper lip and primary palate fusion at single cell resolution
Lewis et al. PNAS	9	2019	Single Cell	Analysis of zebrafish leucophores
Lukowski et al. CellRep	4	2019	Single Cell	Single-cell transcriptional profiling of aortic endothelium in mouse
vanGurp et al. Development	10	2019	Single Cell	Single-cell transcriptomics of the embryonic mouse pancreas
Ponce et al. Development	9	2019	Single Cell	scRNA profiling of pancreatic endocrinogenesis in mouse
Pellin et al. NatureComm	7	2019	Single Cell	Single cell transcriptional landscape of human hematopoietic progenitors
Lareau et al. NatureBiotech	27	2019	Single Cell	Chromatin accessibility of single cells in mouse brain, and resting and stimulated human bone marrow derived cells
Ponzetta et al. Cell	12	2019	Single Cell	scRNAseq of sorted mouse sarcoma-infiltrating unconventional alpha-beta T cells
Janiszewska et al. NatureCellBiol	12	2019	Single Cell	scRNAseq of CD45+ cells from primary tumors, blood and lungs
Hu et al. PlosBiol	11	2019	Single Cell	Transcriptome landscape of human fetal neural retina and retinal pigment epithelium
Peng et al. CellRes	10	2019	Single Cell	Transcriptome profile of normal pancreatic and pancreatic ductal adenocarcinoma tumor tissues
Wolock et al. CellRep	7	2019	Single Cell	Profiling mouse bone marrow stromal cells
Aizarani et al. Nature	39	2019	Single Cell	Adult human liver cell atlas
Polioudakis et al. Neuron	16	2019	Single Cell	Single cell expression dataset of the developing human neocortex
McCray et al. AJCEU	10	2019	Single Cell	scRNAseq analysis of integrated humnn monolayer primary prostate epithelial cells and three-dimensional prostatic organoids from a single patient
Fan et al. NatureComm	19	2019	Single Cell	scRNAseq of whole human adult ovaries
Bossel et al. NatureComm	19	2019	Single Cell	scRNAseq of normal and ex-vivo Salmonella infected human peripheral blood cells
deSoysa et al. Nature	44	2019	Single Cell	Interrogation of early cardiac progenitor cells using scRNAseq
Hovestadt et al. Nature	10	2019	Single Cell	Analysis of intra- and intertumoral heterogeneity in 25 human medulloblastomas
Segal et al. NatureComm	5	2019	Single Cell	Analysis of human detal and adult liver
Wirka et al. NatureMed	32	2019	Single Cell	Transcriptomic phenotype of modulated vascular smooth muscle cells in vivo in atherosclerotic lesions in mouse and human arteries
Liu et al. CellRep	17	2019	Single Cell	scRNAseq of mouse cardiac outflow tract cells from three developmental stages
Culemann et al. Nature	13	2019	Single Cell	Transcriptional profiles of resident synovial machrophages in healthy and inflamed joints from mouse
Weinstock et al. Immunometab	15	2019	Single Cell	scRNAseq of visceral adipose tissue leukocytes from lean, obese and caloric restriction post obesity mice
LoGiudice et al. Development	14	2019	Single Cell	Single cell transcriptomic profile of early-born retinal neurons in mouse
Cheng et al. CellRep	26	2019	Single Cell	Transcriptomic profile of hematopoietic stem and progenitor cells from control and m6A methyltransferase Mettl3 conditional knockout mice
Witt et al. Elife	9	2019	Single Cell	scRNAseq of Drosophila testis
Min et al. PNAS	2	2019	Single Cell	Identification of human adipocyte subtypes using scRNAseq
Huisman et al. NatureComm	12	2019	Single Cell	Single cell transcriptome of the developing mouse arcuate nucleus neurons
Zhou et al. Nature	3	2019	Single Cell	Transcriptome and DNA methylome of cultured human peri-implantation embryos
Hodge et al. Nature	75	2019	Single Cell	Identification of cell types in the human cerebral cortex
Adriaenssens et al. CellMetabolism	6	2019	Single Cell	scRNAseq of hypothalamic Gipr-expressing cells
Deng et al. Development	5	2019	Single Cell	Single-cell transcriptomic dataset of wild-type Drosophila wing imaginal discs
Yu et al. JASN	31	2019	Single Cell	Single-cell transcriptomic map of the human and mouse bladders
Yang et al. NatureComm	12	2019	Single Cell	scRNAseq of natural killer cells from human bone marrow and blood
Sharir et al. NatureCellBiol	18	2019	Single Cell	Identification of cell types in the mouse incisor epithelium in control and injury recovering cell populations
Packer et al. Science	525	2019	Single Cell	Identification of terminal and pre-terminal cell types of C. elegans
Zheng et al. CellRes	8	2019	Single Cell	Study of hematopoietic stem cell generation in human embryo
Wilson et al. PNAS	34	2019	Single Cell	snRNAseq analysis of early human diabetic nephropathy
Bhattacherjee et al. NatureComm	30	2019	Single Cell	Transcriptional profile of cells in mouse prefrontal cortex during adolescence and cocaine addiction
Ximerakis et al. NatureNeuroscience	90	2019	Single Cell	Transcriptional profiles of young and old mouse brains
Wang et al. CancerDiscov	5	2019	Single Cell	scRNAseq, snRNAseq and scATACseq of proliferating glioblastoma cells from 28 patients
Santos et al. NatureComm	10	2019	Single Cell	scRNAseq of proliferating and differentiating mouse urothelial organoids
Jordao et al. Science	26	2019	Single Cell	Single-cell profiling of homeostatic and disease associated microglia and macrophages from the central nervous system in mouse
Hammond et al. Immunity	22	2019	Single Cell	Microglia in mice during development, old age and after injury
Amiri et al. Science	15	2018	Single Cell	snRNAseq of iPSC-derived human telencephalic organoids and isogenic fetal cortex
Wang et al. CellStemCell	14	2018	Single Cell	scRNAseq of human testicular cells from donors with normal spermatogenesis and nonobstructive azoospermia
Petitpre et al. NatureComm	8	2018	Single Cell	Identification of spiral ganglion neuron types in mouse cochlea
Song et al. ScientificRep	7	2018	Single Cell	Study of salivary gland development in mouse
Hu et al. GenesDev	37	2018	Single Cell	snRNAseq analysis of postnatal mouse hearts
Byrnes et al. NatureComm	58	2018	Single Cell	Murine pancreatic development at single-cell resolution
Wang et al. CellRep	13	2018	Single Cell	Molecular profiles of human fetal kidney
Avey et al. CellRep	47	2018	Single Cell	Study of cell-type-specific opioid responses by scRNAseq of control and morphine treated mouse nucleus accumbens
Owen et al. NatureComm	7	2018	Single Cell	scRNAseq of Barrett's oesophagus and upper gastrointestinal tract
Cheung et al. Endocrinology	8	2018	Single Cell	scRNAseq of mouse pituitary glands
MacParland et al. NatureComm	20	2018	Single Cell	scRNAseq of human liver
Hermann et al. CellRep	129	2018	Single Cell	Single-cell transcriptome of mouse and human spermatogenesis
Ariss et al. NatureComm	15	2018	Single Cell	Catalog of Drosophila eye disc cells
Zywitza et al. CellRep	17	2018	Single Cell	Cell types in the mouse subventricular zone
Tepe et al. CellRep	56	2018	Single Cell	Study of olfactory bulb composition in adult mouse
Kretzschmar et al. PNAS	9	2018	Single Cell	Mapping proliferating cells and their progeny in homeostatic and regenrating mouse hearts
Krentz et al. StemCellRep	37	2018	Single Cell	Single cell transcriptomes of mouse embryonic pancreas and hESC-derived pancreatic progenitors
Ledergor et al. NatureMed	28	2018	Single Cell	Study of plasma cell heterogeneity in symptomatic and asymptomatic myeloma
Li et al. Science	15	2018	Single Cell	Integrative model of the human fetal and adult brain
Collin et al. StemCells	9	2018	Single Cell	scRNAseq of human pluripotent stem-cell derived retinal organoids
Henry et al. CellRep	9	2018	Single Cell	Single-cell atlas of the normal adult human prostate and prostatic urethra
Tabib et al. JID	19	2018	Single Cell	scRNAseq of enzymatically digested skin from six healthy control skin samples
Hrvatin et al. NatureNeuroscience	31	2018	Single Cell	Activity-dependent transcriptional states in mouse visual cortex
Zemmour et al. NatureImmunology	6	2018	Single Cell	Landscape of regulatory T cell phenotypes
Vanlandewijck et al. Nature	15	2018	Single Cell	Cell types and zonation in the mouse brain vasculature
Gao et al. NatureCellBiol	40	2018	Single Cell	Single cell transcriptome of the human fetal digestive tract
Savas et al. NatureMed	10	2018	Single Cell	Single-cell profiling of breast cancer T cells
Guo et al. NatureMed	22	2018	Single Cell	Characterization of T-cells in non-small-cell lung cancer by scRNA-seq
Rheaume et al. NatureComm	40	2018	Single Cell	Single cell transcriptome profiling of retinal ganglion cells from left and right eyes of mouse
Lindstrom et al. JASN	12	2018	Single Cell	scRNAseq of predominantly mesenchymal cell types from the cortical nephrogenic niche of fetal human kidney at week 16
Cochain et al. CircRes	13	2018	Single Cell	scRNAseq of leukocyte populations in healthy and atherosclerotic aortas of atherosclerosis-prone mice
Rodda et al. Immunity	9	2018	Single Cell	scRNAseq of peripheral lymph node stromal cells from uninfected mice and mice infected with LCMV-Armstrong
Karaiskos et al. JASN	15	2018	Single Cell	Transcriptional profiling of mouse glomerular cells
Zuo et al. AJRCCM	3	2018	Single Cell	Single-cell transcriptome analysis of human small airway epithelial cells
Kernfeld et al. Immunity	23	2018	Single Cell	Single-cell transcriptomic atlas of thymus organogenesis
Steuerman et al. CellSys	9	2018	Single Cell	scRNA-seq of immune and non-immune cells from lungs treated with influenza virus
Zeng et al. Cell	22	2018	Single Cell	Transcriptome analysis of neoblasts from normal and sub-lethally irradiated Planaria
Burl et al. CellMetabolism	17	2018	Single Cell	scRNA-seq of adipose tissue stromal and immune cells
Wu et al. JASN	16	2018	Single Cell	Transcriptomic analysis of healthy adult kidney and kidney transplant biopsy
Lambrechts et al. NatureMed	52	2018	Single Cell	Stromal cells in the human lung tumor microenvironment
Scavuzzo et al. NatureComm	51	2018	Single Cell	Transcriptome profiling of pancreas from mouse embryos
Liu et al. CellResearch	14	2018	Single Cell	scRNA-seq of placental cells from first and second trimester human placentas
Fan et al. CellResearch	35	2018	Single Cell	Spatial transcriptomic survey of human embryonic cerebral cortex
Nguyen et al. NatureComm	6	2018	Single Cell	Transciptome profile of primary human breast epithelial cells
Xie et al. CellReports	2	2018	Single Cell	Study of mesenchymal cell subtypes in normal and fibrotic mouse lungs
Sathyamurthy et al. CellReports	50	2018	Single Cell	Atlas of adult mouse spinal cord cell types
Wang et al. PNAS	2	2018	Single Cell	scRNA-seq of pulmonary alveolar cells from postnatal mouse lungs
Stevant et al. CellReports	6	2018	Single Cell	Study of cell lineage specification of gonadal somatic cells during male sex determination
Patil et al. ScienceImmuno	4	2018	Single Cell	Single cell transcriptome analysis of circulating human CD4+ cytotoxic T lymphocytes
Skelly et al. CellReports	4	2018	Single Cell	Transcriptional profiling of non-myocyte cells in the adult mouse heart
Basak et al. PNAS	9	2018	Single Cell	Study of neural stem cells in the adult mouse subependymal zone niche
Saunders et al. Cell	565	2018	Single Cell	Identification of cell types from the adult mouse brain
Green et al. DevCell	26	2018	Single Cell	Identification of mouse testicular cell types
Shrestha et al. Cell	17	2018	Single Cell	Sensory neuron diversity in the inner ear
Sun et al. Cell	5	2018	Single Cell	Subtypes of spiral ganglion from mouse inner ear
Menon et al. Development	11	2018	Single Cell	Cell type identification in human fetal kidney
Marques et al. DevCell	9	2018	Single Cell	Study of transcriptional patterns of oligodendrocyte lineage progenitors during development
Klum et al. EMBOReports	6	2018	Single Cell	Transcriptomes of the cell types in developing mouse spinal cord
Jia et al. NatureComm	8	2018	Single Cell	Transcription profiles and chromatin accessibility profiles of cardiac progenitor cell transition states
Moffitt et al. Science	66	2018	Single Cell	Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region
Vento-Tormo et al. Nature	32	2018	Single Cell	Single-cell transcriptional profiling of the early maternal-fetal interface
Jerby-Arnon et al. Cell	1	2018	Single Cell	Checkpoint blockade resistance program in melanoma patients
Sade-Feldman et al. Cell	19	2018	Single Cell	Immune cell states in melanoma samples from responders and non-responders to checkpoint immunotherapy
Kinchen et al. Cell	38	2018	Single Cell	Profiling of mesenchymas cells in human and mouse from normal and diseased colonic tissue
Hook et al. AJHG	13	2018	Single Cell	Single-cell RNA-seq analysis of mouse dopaminergic neurons
Boulais et al. Immunity	9	2018	Single Cell	Transcription profiles of triple negative CD45- Ter119- CD31- bone marrow cells
Tasic et al. Nature	101	2018	Single Cell	Study of cell types from the mouse neocortex
Cao et al. Science	14	2018	Single Cell	Chromatin accessibility and gene expression profiles in mouse kidney cells
Spanjaard et al. NatureBiotech	146	2018	Single Cell	Study of lineage tracing using genetic scars in zebrafish larvae and adults
Schwalie et al. Nature	7	2018	Single Cell	Study of adipogenic stem and precursor cells
Su et al. Nature	4	2018	Single Cell	Study of early progenitor cells building coronary arteries
Bornstein et al. Nature	45	2018	Single Cell	Study of the stromal compartment of the mouse thymus
Swapna et al. GenomeBiol	11	2018	Single Cell	S. mediterranea transcripts by whole-animal scRNA-seq
Konstantinides et al. Cell	51	2018	Single Cell	Study of fly optic lobe cells
Zeisel et al. Cell	265	2018	Single Cell	Transcriptomes in the mouse nervous system
Ordovas-Montanes et al. Nature	14	2018	Single Cell	Transcription patterns of human surgical chronic rhinosinusitis samples and healthy nasaal scrapings
Cohen et al. Cell	260	2018	Single Cell	Single-cell transcription profiles and signaling interaction maps during mouse lung development
Azizi et al. Cell	95	2018	Single Cell	Study of diverse immune phonetypes in breast tumor from 8 patients
Croset et al. eLIFE	28	2018	Single Cell	Cellular diversity in the Drosophila midbrain
Montoro et al. Nature	7	2018	Single Cell	Study of adult mouse tracheal epithelial single cells
Plasschaert et al. Nature	18	2018	Single Cell	Single-cell atlas of mouse tracheal epithelial cells
Davie et al. Cell	87	2018	Single Cell	Transcription patterns of the aging Drosophila brain
TabulaMuris et al. Nature	198	2018	Single Cell	Transcription patterns of 20 mouse organs
Cusanovich et al. Cell	85	2018	Single Cell	Chromatin accessibility in 13 mouse tissues
Sebe-Pedros et al. Cell	243	2018	Single Cell	Adult and larval Cnidarian cell types
Lescroart et al. Science	5	2018	Single Cell	Cardiovascular lineage segregation in E6.75 and E7.25 mouse embryos
Dahlin et al. Blood	25	2018	Single Cell	Single cell landscape of hematopoietic stem and progenitor cells in WT and Kit mutant mice
Ibarra-Soria et al. NatureCellBiol	26	2018	Single Cell	Transcriptomic characterization of E8.25 mouse embryos
Filbin et al. Science	11	2018	Single Cell	Study of H3K27M gliomas from 6 patients
Hochgerner et al. NatNeuroscience	8	2018	Single Cell	Study of the diversity of cell types in perinatal, juvenile and adult mouse dendate gyrus
Mi et al. Science	16	2018	Single Cell	Cortical interneuron diversity in the mouse embryo ganglionic eminences
Alemany et al. Nature	16	2018	Single Cell	Transcriptome of hematopoietic cells from kidney marrow, eyes, brain, caudal fin with clone tracing
Dong et al. GenomeBiol	4	2018	Single Cell	Analysis of cells from eight organs and tissues of E9.5 to E11.5 mouse embryos
Stephenson et al. NatureComm	13	2018	Single Cell	Transcriptional atlas of synovial tissue from rheumatoid arthritis patients
Mayer et al. Nature	3	2018	Single Cell	Transcriptomes of mouse embryonic ganglion eminence cells
Zheng et al. MolSysBiol	10	2018	Single Cell	Transcriptional compendium of progenitor states in human cord blood
Bergiers et al. eLife	8	2018	Single Cell	Study of mouse embryonic hematopoiesis
Carmona et al. GenomeRes	3	2018	Single Cell	Analysis of immune cells in zebrafish
Zhong et al. Nature	50	2018	Single Cell	Survey of cells in the developing human prefrontal cortex at gestational week 8-26
Han et al. Cell	1061	2018	Single Cell	Mouse Cell Altas
Lake et al. NatureBiotech	35	2018	Single Cell	Transcriptional states in the human adult brain - visual cotex or visual area, frontal cortex and the lateral hemisphere from 6 individuals post-mortem
Briggs et al. Science	171	2018	Single Cell	Dynamics of gene expression in frog embryogenesis
Wagner et al. Science	197	2018	Single Cell	Gene expression landscape and lineage in zebrafish embryo
Farrell et al. Science	342	2018	Single Cell	Developmental trajectories in wildtype zebrafish at 12 stages (from 3.3 hours to 12 hours post-fertilization) during embryogenesis; Profiling of mutant Mzeop zibrafish at 12 hrs post-fertilization
Fincher et al. Science	408	2018	Single Cell	Cell-type atlas of wild type adult planaria at steady state
Plass et al. Science	86	2018	Single Cell	Cell-type atlas of wild type adult planaria at steady state and during regeneration
Raj et al. NatureBiotech	155	2018	Single Cell	Simultaneous single-cell profiling of lineages and cell types in zebrafish brain
Rosenberg et al. Science	117	2018	Single Cell	Profiling of postnatal day 2 and 11 developing mouse brain and spinal cord
Park et al. Science	24	2018	Single Cell	Atlas of cell types in mouse kidney
Han et al. GenomeBiol	19	2018	Single Cell	Cellular-state landscape of human pluripotent stem cell (hPSC) early differentiation
Shah et al. Cell	9	2018	Single Cell	Transcriptomics and fate mapping of ependymal cells reveals an absence of neural stem cell function
Qiu et al. CellMetabolism	6	2017	Single Cell	Maturation signatures of mouse pancreatic islet alpha and beta cells
Wallrapp et al. Nature	6	2017	Single Cell	Transcriptional profiles of ILC2 cells stimulated with alarmins IL25 and IL33
Artegiani et al. CellReports	9	2017	Single Cell	Single-cell sequencing of the dentate gyrus to study adult mouse neurogenesis
Athanasiadis et al. NatureComm	5	2017	Single Cell	Reconstruction of blood lineage tree in zebrafish
Bach et al. NatureComm	15	2017	Single Cell	Single cell gene expression profiles of mammary epithelial cells in 4 stages of development
Medaglia et al. Science	28	2017	Single Cell	Study of spatial distribution of immune cell types in tissue niches using photoactivatable reporters and scRNA-seq
Magella et al. DevBiology	16	2017	Single Cell	scRNAseq of whole kidneys of E14.5 mice
Boufaied et al. ScientificRep	4	2017	Single Cell	Single-cell trnascriptomics of female rat ventral mesenchymal pad and surrounding urethra
Pal et al. NatureComm	7	2017	Single Cell	Analysis of mammary epithelial cells from pre-puberty to adult
Darmanis et al. CellReports	12	2017	Single Cell	Analysis of sungle cells of glioblastoma and surrounding peripheral brain tissue from 4 patients
Savage et al. CellReports	5	2017	Single Cell	Single cell RNA-seq of breast cancer cells from an exceptional responder to EGFR inhibitor, gefitinib
Honda et al. Elife	6	2017	Single Cell	Elucidation of the development of the endolymphatic sac
Paul et al. Cell	7	2017	Single Cell	Single cell transcriptome analysis of phenotype characterized GABAergic neurons
Tang et al. JExpMed	17	2017	Single Cell	Hematopoietic and renal cell heterogeneity in adult zebrafish
Farmer et al. Development	15	2017	Single Cell	Cell types in the developing lacrimal gland in mouse
Yang et al. Cell	27	2017	Single Cell	Single-cell RNA-seq to study the heterogeneity within hair follicle progenitors and niches
Wallace et al. Neuron	2	2017	Single Cell	Neuronal subtypes in the entopeduncular nucleus of the basal ganglia output region
Gierahn et al. NatureMeth	6	2017	Single Cell	Profiling cell types in PBMCs to validate the Seq-Well method
Palicev et al. GenomeRes	8	2017	Single Cell	Single cell transcriptomes of cells at the maternal-fetal interface at term
Frazer et al. NatureComm	6	2017	Single Cell	Transcriptomics of the 5-HT3aR expressing cortical interneuron subtypes
Spaethling et al. CellReports	5	2017	Single Cell	Single cell transcriptomics of cultured live neurosurgically resected adult brain cells
Dulken et al. CellReports	8	2017	Single Cell	Transcriptomic analysis of adult neural stem cell lineage
Adam et al. Development	19	2017	Single Cell	Molecular atlas of mouse kidney development
Chen et al. CellReports	34	2017	Single Cell	Cell type classification in mouse adult hypothalamus
Campbell et al. NatureNeuroscience	89	2017	Single Cell	Cell type identification in the arcuate hypothalamus and median eminence
Habib et al. NatureMethods	36	2017	Single Cell	Single-nucleus RNA-seq of frozen mouse and human archived brain samples
Keren-Shaul et al. Cell	10	2017	Single Cell	Immune cell types in Alzheimer's Disease
Lawlor et al. GenomeRes	7	2017	Single Cell	Transcriptomes of human islet cells
Bifari et al. CellStemCell	6	2017	Single Cell	Transcription patterns of meningeal cells in newborn mice
Artegiani et al. CellReports	9	2017	Single Cell	Single cell analysis of cells in the hippocampal niche of the dentate gyrus
Mathys et al. CellReports	5	2017	Single Cell	Single cell analysis of cell states of mouse microglia during neurodegenration
Wen et al. JBC	7	2017	Single Cell	Study of post-implantation mouse embryos at E5.5 and E6.5
Chen et al. PNAS	3	2017	Single Cell	Transcriptomes of major renal collecting duct cell types in mouse
Li et al. CellStemCell	15	2017	Single Cell	Analysis of human fetal germ cells and their gonadal niche cells
Velten et al. NatureCellBiol	5	2017	Single Cell	Human haematopoietic stem cell lineage commitment
Halpern et al. Nature	9	2017	Single Cell	Spatial transcriptome of mammalian liver
Cao et al. Science	73	2017	Single Cell	Single-cell trnscriptional profiling of C. elegans
Lonnberg et al. ScienceImmuno	2	2017	Single Cell	Identification of genes associated with the Th1 and Tfh fates in differentiation of naive CD4+ T cells during blodd-stage Plasmodium infection in mice
Wu et al. JEM	3	2017	Single Cell	Identification of highly variable genes in activated B-cells to study class switching to IgE
Stoeckius et al. NatureMeth	8	2017	Single Cell	Method combining highly multiplexed protein marker detection with unbiased transcriptome profiling of cord blood mononuclear cells (CBMCs)
Yang et al. Nature	2	2017	Single Cell	Establishment of mouse expanded potential stem cells
Gerber et al. Oncotarget	3	2017	Single Cell	Heterogeneity in patient-derived melanoma cultures
Zheng et al. Cell	11	2017	Single Cell	Subtypes in T cells in peripheral blood, liver tumor tissue and adjacent normal liver tissue from hepatocarcinoma patients
Karaiskos et al. Science	11	2017	Single Cell	Single-cell spatial transcriptome of the Drosophila embryo
Venteicher et al. Science	5	2017	Single Cell	Lineage and microenvironment in isocitrate dehydrogenase-mutant glioma cells
Villani et al. Science	10	2017	Single Cell	Subtype identification of ~2400 human blood dendritic cells, monocytes and progenitor cells
Liu et al. Nature	7	2017	Single Cell	Global transcriptome changes at early stages during reprogramming of mouse fibroblasts into induced cardiomyocytes (iCM)
Haber et al. Nature	64	2017	Single Cell	Survey of small intestinal epithelial cells
Lavin et al. Cell	10	2017	Single Cell	Simultaneous single-cell analysis of CD45+ immune non-lymphocyte cells in non small cell lung cancer (NSCLC) tumor and non-involved lung to identify myeloid and NK cell responses unique to tumor lesions
Zheng et al. NatComm	13	2017	Single Cell	Identification of immune cell types from peripheral blood mononuclear cells (PMCs)
Olsson et al. Nature	9	2016	Single Cell	Analysis of transitional intermediates spanning myelopoiesis
Zeng et al. NAR	6	2016	Single Cell	Profiling differentiating human myoblasts
Habib et al. Science	35	2016	Single Cell	Analysis of single nuclei from mouse hippocampal snatomical subregions
Moore et al. JExpMed	10	2016	Single Cell	Single cell transcriptional analysis of hematopoiesis in zebrafish
Nelson et al. NatureComm	6	2016	Single Cell	Cell type-specific transcriptional signatures at the maternal-foetal interface in mouse
Telley et al. Science	7	2016	Single Cell	Temporal transcriptional profiles of neural progenitors and neurons in the mouse neurcortex
Engel et al. NatureImmunology	4	2016	Single Cell	Transcription profiles of thymic invariant natural killer T cells
Segerstolpe et al. CellMetabolism	6	2016	Single Cell	Transciptome profiling of human Pancreatic islets
Xin et al. CellMet	8	2016	Single Cell	Single-cell analysis of human islet cells from non-diabetic and Type 2 diabetic donors
Muraro et al. CellSystems	9	2016	Single Cell	Single-cell transcriptome atlas of the human pancreas
Hu et al. ScientificRep	6	2016	Single Cell	Injury response in three types of dorsal root ganglion sensory neurons
Shekhar et al. Cell	26	2016	Single Cell	Classification of mouse retinal bipolar neurons
DeLaughter et al. DevelopmentalCell	3	2016	Single Cell	Study of gene expression during murine heart development from E9.5-P21 using 1133 single cells
Scialdone et al. Nature	10	2016	Single Cell	Single-cell profiling of early mesoderm
Li et al. EMBORep	7	2016	Single Cell	Study of human pancreatic islet cell types
Xin et al. PNAS	2	2016	Single Cell	Study of mouse pancreatic islet cell types
Li et al. DevelopmentalCell	8	2016	Single Cell	Transcriptomics profiling of mouse embryonic cardiac cells
Grun et al. CellStemCell	136	2016	Single Cell	Mouse intestinal and bone marrow, and human adult pancreatic cell type identification
Grover et al. NatComm	2	2016	Single Cell	Platelet bias of aged mouse hematopoietic stem cells using scRNA-seq of 52 cells from young mice (2-3 months) and 62 old mice (20-25 months)
Nestorowa et al. Blood	12	2016	Single Cell	Map of mouse hematopoietic stem and progenitor cell differentiation
Macaulay et al. CellRep	6	2016	Single Cell	Spectrum of differentiation in zebrafish hematopoietic cells from kidney marrow
Yu et al. Nature	12	2016	Single Cell	Study of ILC precursor subsets in mouse bone marrow progenitors
Furlan et al. NatNeuroscience	8	2016	Single Cell	Heterogeneity of mouse stellate and thoracic ganglia
Romanov et al. NatNeuroscience	105	2016	Single Cell	Neuronal subtypes in the mouse hypothalamus
Joost et al. CellSys	31	2016	Single Cell	Cell types in mouse telogen epidermis i.e. epidermis and hair follicles
Marques et al. Science	13	2016	Single Cell	Heterogeneity in oligodendrocytes in mouse
Tasic et al. NatNeuroscience	49	2016	Single Cell	Cell types in the mouse primary visual cortex
Gury-BenAri et al. Cell	15	2016	Single Cell	Profiling intestinal innate lymphoid cells from normal mouse intenstine
Bjorklund et al. NatImmuno	4	2016	Single Cell	Heterogeneity in human tonsil CD127+ innate lymphoid cells and natural killer cells
Gokce et al. CellRep	21	2016	Single Cell	Cell types in mouse striatum
Tirosh et al. Science	9	2016	Single Cell	Study of cell types in metastatic melanoma tumors from 19 patients
Treutlein et al. Nature	3	2016	Single Cell	Conversion between somatic fates from mouse embryonic fibroblasts to neurons on Ascl1 overexpression - day 0 , 2, 5, 22
Tohonen et al. NatureComm	2	2015	Single Cell	Single cell transcriptome during human preimplantation development
Burns et al. NatureComm	6	2015	Single Cell	Single-cell RNA-seq of cells in sensory organs from the neonatal inner ear
Moignard et al. NatureBiotech	5	2015	Single Cell	Hematopoietic development in mouse embryo by studying cells with blood forming potential at 4 time points between E7.0 and E8.5
Blakeley et al. Development	6	2015	Single Cell	Human and mouse blastocyst analysis
Pollen et al. Cell	9	2015	Single Cell	Celly types in the human cortex during development
Darmanis et al. PNAS	10	2015	Single Cell	Cell diversity in human adult and fetal brain
Usoskin et al. NatNeuroscience	11	2015	Single Cell	Classification of mouse sensory neuron types
Avraham et al. Cell	11	2015	Single Cell	Heterogeneity in mouse bone marrow-derived macrophages exposed to Salmonella and LPS coated beads
Hanchate et al. Science	4	2015	Single Cell	Study the progression of mouse epithelial neurons to olfactory sensory neurons to discover how Olfr gene is selected in each neuron
Tsang et al. GenomeBiol	3	2015	Single Cell	Mouse hematopoietic stem cells with Bcl11a (83 normal +52 stringently sorted) and without Bcl11a (82 cells)
Kolodziejczyk et al. CellStemCell	8	2015	Single Cell	Mouse ESCs cultered in serum (250 cells);2i (295 cells) and a2i (159 cells)
Grun et al. Nature	31	2015	Single Cell	Study of mouse intestinal organoids of epithelial cells
Camp et al. PNAS	6	2015	Single Cell	Comparison of the cell heterogeneity in human cerebral organoids and fetal neocortex. Analysis of fetal neocortex cells from 12-13 weeks post conception(wpc)
Lawson et al. Nature	3	2015	Single Cell	Study of 441 human metastatic cells and 523 primary tumor cells
Klein et al. Cell	9	2015	Single Cell	Heterogeneity in mouse embryonic stem cells
Gaublomme et al. Cell	7	2015	Single Cell	Th17 cell pathogenicity progression from from self-renewing in lymph node to less functional in central nervous system in vivo (420 in vitro cells not included in data)
Macosko et al. Cell	39	2015	Single Cell	Introduction of Drop-seq. Identification of cell types in mouse retinal cells
Paul et al. Cell	19	2015	Single Cell	Heterogeneity in myeloid progenitors - hematopoiesis at single cell resolution
Ting et al. CellReports	1	2014	Single Cell	Single-cell RNA sequencing of pancreatic circulating tumor cells
Ohnishi et al. NatureCellBiol	4	2014	Single Cell	Epiblast and primitive endoderm lineage segregation within the inner cell mass of the mouse blastocyst at E3.5 and E4.5
Jaitin et al. Science	11	2014	Single Cell	Introduction to MARS-Seq;identification of immune cell types of mouse splenic cells enriched for the CD11c surface marker
Pollen et al. NatBiotech	3	2014	Single Cell	Testing of single-cell technology using 301 pluripotent;blood;skin and neural cells from human cells line and 65 cells from human developing cortex
Mahata et al. CellRep	2	2014	Single Cell	Differentiation of naive T cells to Th2 cells
Treutlein et al. Nature	7	2014	Single Cell	Mouse lung lineage markers
Moignard et al. NatureCellBiol	5	2013	Single Cell	Study of blood stem and progenitor cells for 18 transcription factors
Shalek et al. Nature	2	2013	Single Cell	Study of mouse BMDCs at 4hr after exposure to LPS
Tang et al. CellStemCell	6	2010	Single Cell	Study of transition from inner cell mass (ICM) to pluripotent embryonic stem cells (ESCs)
Guo et al. DevCell	3	2010	Single Cell	Cell Fate decision prior to implantation
Subramanian et al. PNAS	7693	2005	Bulk	Collection of annotated gene sets

Disease	Marker gene sets
acquired metabolic disease	161
adenocarcinoma	37
age related macular degeneration	14
Alzheimer's disease	10
anemia	11
aortic atherosclerosis	42
arteriosclerosis	42
arteriosclerotic cardiovascular disease	42
artery disease	127
arthritis	13
asthma	94
astrocytoma	30
atherosclerosis	42
atopic dermatitis	2
autism spectrum disorder	2
autoimmune disease of central nervous system	17
autoimmune disease of the nervous system	17
autoimmune hypersensitivity disease	17
autosomal dominant disease	14
autosomal genetic disease	14
bacterial infectious disease	27
benign neoplasm	72
bone cancer	51
bone disease	115
bone inflammation disease	13
bone marrow cancer	44
bone marrow disease	44
brain cancer	152
brain disease	259
breast cancer	127
breast carcinoma	86
breast disease	127
bronchial disease	94
cancer	1107
cannabis abuse	7
carbohydrate metabolism disease	104
carcinoma	176
cardiomyopathy	21
cardiovascular cancer	20
cardiovascular system disease	188
cell type benign neoplasm	7
cell type cancer	333
central nervous system cancer	152
central nervous system disease	468
cerebellar disease	74
cerebellum cancer	74
colitis	82
colon cancer	20
colonic disease	20
colorectal cancer	46
common cold	14
connective tissue cancer	51
connective tissue disease	184
coronary artery disease	22
Coronavirus infectious disease	14
COVID-19	14
Crohn's disease	34
degeneration of macula and posterior pole	14
demyelinating disease	17
dengue disease	4
dermatitis	2
developmental disorder of mental health	2
diabetes mellitus	104
dilated cardiomyopathy	1
disease	4075
disease by infectious agent	101
disease of anatomical entity	2596
disease of cellular proliferation	1179
disease of mental health	22
disease of metabolism	163
drug dependence	9
encephalomyelitis	28
endocrine gland cancer	13
endocrine system disease	25
epilepsy	17
esophageal cancer	35
esophageal disease	35
eye degenerative disease	14
eye disease	88
fatty liver disease	2
female reproductive organ benign neoplasm	65
female reproductive system disease	130
focal epithelial hyperplasia	17
gastrointestinal system cancer	103
gastrointestinal system disease	331
genetic disease	14
glioblastoma mesenchymal subtype	3
glioblastoma multiforme	27
glioblastoma neural subtype	3
glucose metabolism disease	104
heart cancer	20
heart disease	41
hematologic cancer	50
hematopoietic system disease	133
hepatobiliary disease	57
hepatobiliary system cancer	2
hepatocellular carcinoma	2
human immunodeficiency virus infectious disease	12
Huntington's disease	2
hypersensitivity reaction disease	17
hypertension	63
ileitis	34
immune system disease	17
inflammatory bowel disease	116
influenza	9
infratentorial cancer	84
inherited metabolic disorder	2
integumentary system disease	2
interstitial lung disease	18
intestinal cancer	46
intestinal disease	136
intrinsic cardiomyopathy	1
kidney cancer	44
kidney disease	33
kidney failure	22
large intestine cancer	46
leukemia	6
leukocyte disease	28
lipid storage disease	2
liver cancer	2
liver carcinoma	2
liver cirrhosis	55
liver disease	57
lower respiratory tract disease	267
lung adenocarcinoma	27
lung cancer	155
lung carcinoma	126
lung disease	173
lung non-small cell carcinoma	126
lymphocytic choriomeningitis	16
lysosomal storage disease	2
macular degeneration	14
malaria	2
malignant glioma	51
medulloblastoma	10
melanoma	94
monogenic disease	14
morphine dependence	9
multiple myeloma	28
multiple sclerosis	17
musculoskeletal system cancer	51
musculoskeletal system disease	235
myelofibrosis	16
myeloid leukemia	6
myeloid neoplasm	44
myocardial infarction	21
nervous system cancer	182
nervous system disease	738
neurodegenerative disease	29
non-alcoholic fatty liver disease	2
non-alcoholic steatohepatitis	2
nutrition disease	57
obesity	57
ocular cancer	30
oligodendroglioma	3
opiate dependence	9
opioid abuse	4
organ system benign neoplasm	65
organ system cancer	745
overnutrition	57
pancreas disease	25
pancreatic adenocarcinoma	10
pancreatic cancer	11
pancreatic carcinoma	11
pancreatic ductal adenocarcinoma	10
pancreatitis	14
papilloma	7
parasitic infectious disease	2
parasitic protozoa infectious disease	2
pervasive developmental disorder	2
primary bacterial infectious disease	27
proteinuria	11
pulmonary fibrosis	18
reproductive organ benign neoplasm	65
reproductive system disease	195
respiratory system cancer	155
respiratory system disease	445
retinal degeneration	14
retinal disease	14
rheumatoid arthritis	13
salmonellosis	27
sarcoma	12
sensory system cancer	30
sensory system disease	88
skin disease	2
spinal disease	51
stomach cancer	20
subacute myeloid leukemia	6
substance abuse	11
substance dependence	9
substance-related disorder	20
tauopathy	10
thoracic cancer	127
thoracic disease	254
type 1 diabetes mellitus	24
type 2 diabetes mellitus	46
ulcerative colitis	82
upper respiratory tract disease	14
uremia	22
urinary system cancer	44
urinary system disease	33
uterine benign neoplasm	65
uterine disease	65
uterine fibroid	65
uveal cancer	30
uveal disease	30
uveal melanoma	30
vascular disease	127
viral infectious disease	72

Organ-Tissue	Marker gene sets
2 cell stage	1
2-cell stage embryo	2
4 cell stage	1
4-8 cell stage embryo	1
8 cell stage	1
8-cell stage embryo	1
abdomen blood vessel	5
abdomen connective tissue	57
abdomen element	1427
abdominal lymph node	44
abdominal segment blood vessel	5
abdominal segment connective tissue	57
abdominal segment element	1439
abdominal viscera	167
adenohypophyseal placode	2
adipose tissue	200
adrenal gland	120
adrenal/interrenal gland	120
allantois	3
allocortex	5
alveolar system	14
Ammon's horn	106
amnion	1
amygdala	7
anatomical cavity	2
anatomical cluster	1214
anatomical collection	2
anatomical conduit	808
anatomical junction	6
anatomical line	1
anatomical projection	7
anatomical row	1
anatomical space	54
anatomical surface region	1
anatomical system	361
anlage	21
antenna	1
anterior cingulate cortex	6
anterior definitive endoderm	1
anterior neural tube	8
anterior nuclear group	3
anterior region of body	1
aorta	58
aorta endothelium	4
appendage	14
arachnoid mater	3
archicortex	5
arcuate nucleus of hypothalamus	86
arcuate nucleus of medulla	2
arterial blood vessel	102
arterial system endothelium	4
artery	44
arthropod sensillum	1
ascending colon	11
ascending limb of loop of Henle	1
atrioventricular canal	2
atrioventricular region	5
atypical epithelium	7
autonomic ganglion	8
autopodial extension	62
axon tract	16
basal forebrain	19
basal ganglion	15
basal nucleus of telencephalon	69
bile duct	1
bladder organ	110
blastocyst	5
blastula stage	1
blood	524
blood island	13
blood vessel	254
blood vessel endothelium	9
bodily fluid	543
body of caudate nucleus	3
body proper	146
body wall	3
bone element	89
bone marrow	448
bony plate	5
brachial lymph node	44
brain	2953
brain blood vessel	1
brain commissure	8
brain gray matter	364
brain meninx	1
brain ventricle/choroid plexus	31
brainstem	1
brainstem nucleus	13
branchiomeric muscle	1
breast	141
breast epithelium	7
Brodmann area	49
bronchus	13
brown adipose tissue	13
buccal mucosa	8
CA1 field of hippocampus	9
CA2 field of hippocampus	1
CA3 field of hippocampus	7
calcareous tooth	18
capillary	3
capillary layer of choroid	1
cardiac atrium	12
cardiac chamber	48
cardiac septum	1
cardiac ventricle	14
cardiogenic mesoderm	3
cardiovascular system endothelium	14
cartilage tissue	1
caudal fin	4
caudal ganglionic eminence	4
caudate nucleus	6
cavitated compound organ	852
cell cluster	164
cell cluster organ	62
cell layer	12
central gray substance	1
central gray substance of midbrain	1
central nervous system	250
central nervous system cell part cluster	906
central nervous system gray matter layer	118
central vein of liver	1
cerebellar layer	2
cerebellum	52
cerebral cortex	116
cerebral hemisphere gray matter	193
Cerebral organoid	6
cerebrospinal fluid	17
cervical ganglion	8
chordal neural plate	5
chordamesoderm	1
chorionic villus	19
choroid plexus	31
ciliated columnar epithelium	7
ciliated epithelium	7
circulatory organ	498
circumventricular organ	83
claustrum of brain	1
cochlea	95
collecting duct of renal tubule	11
colon	201
columnar epithelium	76
comma-shaped body	3
commissure of telencephalon	8
compound organ	1418
compound organ component	7
connective tissue	460
coronary artery	25
coronary vessel	27
corpus callosum	4
corpus luteum	3
cortex	5
cortex of hair	1
cortical collecting duct	1
cortical layer II	1
cranial ganglion	28
cranial nerve	2
cranial neural crest	6
cranial neuron projection bundle	2
cranial placode	42
cutaneous appendage	7
cytotrophoblast	3
decidua	43
definitive endoderm	1
dense connective tissue	200
dense irregular connective tissue	200
dense mesenchyme tissue	13
dental epithelium	16
dentate gyrus of hippocampal formation	44
dentate nucleus	1
dentition	1
dermal bone	5
dermal papilla	4
dermal skeletal element	5
dermal skeleton	1
descending limb of loop of Henle	1
descending thin limb	4
developing anatomical structure	2184
diencephalic nucleus	170
diencephalon	6
diffuse reticular nucleus	11
digestive system	28
digestive system duct	2
digestive system element	1063
digestive system gland	470
digestive tract	31
digestive tract epithelium	85
digit	62
distal convoluted tubule	10
distal tubule	6
dorsal ectoderm derivative	1
dorsal epidermis primordium	1
dorsal horn of spinal cord	26
dorsal lateral plate region	6
dorsal ocellus	1
dorsal plus ventral thalamus	54
dorsal region element	164
dorsal root ganglion	18
dorsal telencephalic commissure	4
dorsal thoracic disc	5
dorsolateral placode	10
duct	145
duct of male reproductive system	136
duodenum	22
early embryo	3
early proximal tubule	1
ecto-epithelium	137
ectoderm	10
ectoderm-derived structure	6161
ectodermal placode	52
embryo	117
embryo stage	229
embryoid body	92
embryonic brain	2
embryonic cement gland	2
embryonic structure	1895
embryonic tissue	327
endo-epithelium	39
endocardium	5
endochondral bone	42
endochondral element	84
endocrine gland	833
endoderm	37
endoderm of foregut	1
endoderm-derived structure	1779
endometrial stroma	1
endometrium	9
endothelium	22
endothelium of capillary	2
endothelium of peritubular capillary	2
enteric nervous system	7
entire embryonic mesenchyme	25
enveloping layer of ectoderm	2
epiblast (generic)	39
epibranchial ganglion	24
epibranchial placode	21
epicardium	5
epidermis gland	2
epidermis suprabasal layer	1
epididymis	4
epiphysis	1
epithalamus	1
epithelial furrow	1
epithelial layer of duct	5
epithelial sac	25
epithelial tube	138
epithelial vesicle	116
epithelium	1083
epithelium of crypt of Lieberkuhn	19
epithelium of crypt of Lieberkuhn of small intestine	19
epithelium of female urethra	1
epithelium of mucosa	64
epithelium of small intestine	38
epithelium of urethra	2
epithelium-associated lymphoid tissue	10
esophagus	51
excretory tube	135
exocrine gland	695
exocrine gland of integumental system	196
extensor digitorum longus	6
extensor muscle	6
external ectoderm	3
external female genitalia	1
external genitalia	1
external integument structure	51
external soft tissue zone	147
extraembryonic ectoderm	4
extraembryonic endoderm	5
extraembryonic membrane	4
extraembryonic mesoderm	2
extraembryonic structure	69
extraembryonic tissue	17
extraglomerular mesangium	1
eye	59
eye epithelium	11
eye gland	15
eye primordium	3
eye-antennal disc	15
face	26
facial skeleton	6
fallopian tube	21
fastigial nucleus	1
fat pad	8
female reproductive gland	3
female reproductive organ	155
fenestrated capillary	3
fin	13
floor plate	5
food storage organ	161
forebrain	5
foregut	3
foregut epithelium	1
frontal cortex	81
functional part of brain	64
future central nervous system	10
gall bladder	32
ganglion	62
ganglion of peripheral nervous system	8
ganglionic eminence	6
gastric pit	2
gastrointestinal system epithelium	57
gastrula	3
geniculate placode	1
germ layer	213
germ layer / neural crest	243
germinal center	2
gland	2079
gland of diencephalon	97
gland of digestive tract	13
gland of integumental system	198
gland of ocular region	15
glomerular endothelium	1
glomerular epithelium	1
gonad	396
granular layer of cerebellar cortex	1
gray matter	386
gray matter of diencephalon	6
gray matter of forebrain	344
gray matter of hindbrain	4
gray matter of midbrain	1
gray matter of telencephalon	338
great vessel of heart	58
habenula	11
habenular nucleus	11
haemolymphatic fluid	526
hair follicle	58
hair follicle bulge	10
hair follicle placode	4
hair inner root sheath	7
hair medulla	2
hair outer root sheath	1
hair root sheath	8
hair shaft	5
hatching gland	5
head fold of embryonic disc	1
head kidney	48
head mesenchyme	2
head sensillum	1
heart	498
heart blood vessel	25
heart layer	12
heart left ventricle	9
heart primordium	1
heart right ventricle	4
hematopoietic system	2
hematopoietic tissue	19
hemolymphoid system gland	108
hemopoietic organ	291
hepatic portal vein	1
hepatic sinusoid	3
heterogeneous tissue	33
hindbrain	33
hindbrain nucleus	15
hindgut	4
hindlimb muscle	71
hippocampal field	17
hippocampal formation	12
holocrine gland	2
hypoblast (generic)	10
hypodermis	43
hypothalamic nucleus	86
hypothalamus	141
ileum	59
imaginal disc	20
immaterial anatomical entity	55
immature eye	6
immune organ	433
immune system	51
incisor tooth	18
inferior cervical ganglion	8
infundibulum of hair follicle	1
inguinal lymph node	4
inner cell mass	7
inner cell mass derived hypoblast	9
inner dental epithelium	4
inner nuclear layer of retina	1
inner plexiform layer of retina	1
insect region of integument	1
integumentary adnexa	9
integumentary projection	7
integumentary system layer	47
intercerebral commissure	4
intermediate mesoderm	16
internal ear	28
interstitial tissue	7
interventricular septum	1
intestinal epithelium	57
Intestinal organoid	56
intestine	242
involuting marginal zone	1
irregular connective tissue	200
islet of Langerhans	101
jaw region	1
jejunum	20
kidney	578
kidney epithelium	105
kidney interstitium	7
Kidney organoid	25
kidney pelvis urothelium	3
kidney vasculature	1
lacrimal gland	15
lamina	23
large intestine	26
larva	69
larval stage	76
late embryonic stage	138
lateral ganglionic eminence	1
lateral gland of orbital region	15
lateral globus pallidus	69
lateral habenular nucleus	5
lateral line placode	2
lateral line primordium	2
lateral line system	15
lateral nasal process mesenchyme	2
lateral plate	5
lateral plate mesoderm	4
lateral structure	1650
layer of muscle tissue	9
layer of neocortex	1
layer of retina	16
layer of synovial tissue	26
left cardiac atrium	2
left cardiac chamber	11
lens placode	4
leptomeninx	29
life cycle stage	579
limb mesenchyme	1
limb muscle	89
limiting membrane of retina	1
liver	470
liver blood vessel	4
lobe of cerebral hemisphere	17
long bone	42
loop of Henle	15
lumbar dorsal root ganglion	11
lumbar spinal cord	50
lung	815
lung mesenchyme	8
lymph	2
lymph node	190
lymph node germinal center	1
lymph node medullary sinus	1
lymphoid tissue	14
lymphomyeloid tissue	33
major salivary gland	7
male accessory sex gland	45
male reproductive gland	49
male reproductive organ	227
mammary gland	194
mantle	4
marginal zone of embryo	3
maxillary process mesenchyme	1
mechanoreceptor	4
medial ganglionic eminence	8
medial globus pallidus	35
medial habenular nucleus	6
median eminence of neurohypophysis	74
median fin	4
mediastinal lymph node	6
medulla oblongata	1
medulla of organ	7
membrane bone	5
membrane organ	30
membranous layer	4
meninx	30
mesangium	1
mesenchyme	53
mesenchyme derived from head neural crest	2
mesenchyme derived from neural crest	2
mesenchyme from somatopleure	2
mesenchyme of fronto-nasal process	2
mesenteric lymph node	44
meso-epithelium	68
mesoderm	159
mesoderm-derived structure	2695
mesonephric epithelium	5
mesonephric tubule	5
mesothoracic tergum	1
metanephric cap	8
midbrain	46
midbrain nucleus	61
midbrain tectum	1
midbrain-hindbrain boundary	1
midgut	24
mixed endoderm/mesoderm-derived structure	194
molecular layer of cerebellar cortex	1
morphological feature	7
mouth mucosa	9
mucosa	36
mucosa of oral region	1
multi cell part structure	1074
multi organ part structure	128
multi-tissue structure	1211
multicellular organism	1192
multilaminar epithelium	15
muscle layer of intestine	1
muscle layer of rectum	1
muscle of leg	7
muscle organ	191
muscle structure	261
muscle tissue	4
muscular coat	2
muscular coat of digestive tract	2
musculature	129
musculature of body wall	81
myocardium	7
nasal cavity epithelium	7
nasal cavity mucosa	18
nasolacrimal groove	2
nasopharynx	1
neck of organ	18
neocortex	101
neonate stage	131
nephric duct	4
nephridium	11
nephron	14
nephron epithelium	91
nephron progenitor	6
nephron tubule	95
nerve	2
nerve ending	4
nerve fiber layer of retina	1
nerve of head region	2
nervous system	265
nervous system cell part layer	144
nervous system commissure	8
neural crest	30
neural crest-derived structure	195
neural nucleus	337
neural plate	8
neural tube	2
neural tube basal plate	1
neurectoderm	7
neuroendocrine gland	98
neurogenic placode	36
neurohypophysis	7
neuron projection bundle	20
nociceptor	4
nodosal placode	18
non-material anatomical boundary	1
non-neural ectoderm	1
non-neurogenic ectodermal placode	10
nose epithelium	9
notochord	6
nuclear complex of neuraxis	21
nucleus of brain	337
nucleus of cerebellar nuclear complex	2
nucleus of dorsal thalamus	38
nucleus of medulla oblongata	2
nucleus of thalamus	84
nucleus of ventral thalamus	35
olfactory bulb	59
olfactory epithelium	7
olfactory placode	3
olfactory region	5
omentum	32
optic cup	3
optic vesicle	2
oral gland	12
organ component layer	376
organ part	2211
organ subunit	203
organ system subdivision	501
organism subdivision	258
organism substance	543
Organoid	15
otic placode	5
otolith organ	6
outer dental epithelium	5
outer epithelium	51
outer plexiform layer of retina	1
outer root sheath companion layer	2
outer spiral sulcus	10
outflow tract	5
ovary	154
oviduct	1
paired limb/fin bud mesenchyme	2
pancreas	419
pancreatic duct	1
panniculus adiposus	2
parabrachial nucleus	11
parapharyngeal space	7
pararenal fat	1
parathyroid gland	3
paravertebral ganglion	8
paraxial mesoderm	5
parenchyma	46
parenchyma of central nervous system	26
parietal endoderm	2
pars intermedia of adenohypophysis	7
pars tuberalis of adenohypophysis	7
pectoral appendage bud mesenchyme	2
pelvic appendage muscle	71
pelvic complex muscle	71
pelvic region element	8
perichordal tissue	1
periderm	5
peripharyngeal space	10
peripheral lymph node	13
perivascular space	26
pharyngeal arch system	6
pharyngeal epithelium	1
pharyngeal gland	1
pharyngeal mesoderm	3
pharyngeal muscle	1
pharyngeal pouch	1
pharynx	89
photoreceptor array	262
pigment epithelium of eye	11
pigmented layer of retina	11
pineal body	1
pit	1
pituitary gland	15
placenta	175
pleura	15
pons	5
pore	3
portal vein	1
post-anal tail bud	13
post-embryonic organism	269
posterior neural tube	1
posterior nuclear complex of thalamus	4
posterior region of body	1
postnatal subventricular zone	9
pre-chordal neural plate	5
prechordal plate	4
preoptic area	66
presomitic mesoderm	10
presumptive cephalic mesoderm	1
presumptive retinal pigmented epithelium	2
presumptive structure	64
pretectal nucleus	3
primary circulatory organ	498
primary heart field	2
primary subdivision of skull	6
primary visual cortex	49
primitive knot	4
primitive palate	1
primitive streak	2
primordium	69
processual entity	579
proctodeum	1
profundal placode	2
proliferative region	2
pronephric duct	4
pronephric mesoderm	2
prostate epithelium	10
prostate gland	45
Prostatic organoid	10
protonephridium	11
protuberance	4
proximal convoluted tubule	4
proximal straight tubule	1
proximal tubule	29
proximal-distal subdivision of colon	61
proximo-distal subdivision of respiratory tract	1
pseudostratified ciliated columnar epithelium	7
quadriceps femoris	28
rectum	38
red pulp of spleen	1
regional part of brain	1098
regional part of nervous system	1148
regional part of spinal cord	50
renal connecting tubule	8
renal duct	4
renal glomerulus	16
renal medulla collecting duct	2
renal tubule	95
renal vesicle	4
reproductive gland	52
reproductive organ	810
reproductive structure	1301
reproductive system mucosa	9
respiration organ	815
respiratory airway	20
respiratory system epithelium	8
respiratory system gland	1
respiratory system mucosa	18
respiratory tract epithelium	7
respiratory tube	58
reticuloendothelial system	1
retina	262
Retinal organoid	9
rhombic lip	1
rib	42
rib endochondral element	42
right cardiac atrium	4
right cardiac chamber	8
roof of mouth	1
roof plate	2
root	58
S-shaped body	7
sac	130
saliva-secreting gland	12
sebaceous gland	2
secondary heart field	19
secondary palatal shelf	1
secretory circumventricular organ	83
seminal fluid secreting gland	4
seminal vesicle	4
seminiferous tubule of testis	130
sense organ	68
sensory epithelium	7
sensory ganglion	18
sensory organ epithelium	20
sensory receptor	4
sensory system	15
septum	1
serous membrane	41
sigmoid colon	14
simple columnar epithelium	76
simple squamous epithelium	16
sinus venosus	3
sinusoid	3
skeletal element	191
skeletal muscle organ	188
skeletal tissue	1
skin appendage follicle	58
skin appendage placode	4
skin epidermis	51
skin epithelium	10
skin gland	2
skin of body	160
skin sebaceous gland	1
small intestine	151
smooth muscle tissue	4
soleus muscle	7
somatosensory cortex	15
somite	112
spinal cord	164
spinal cord column	39
spinal cord segment	50
spiral sulcus	10
spleen	135
spleen pulp	2
squamous epithelium	16
stellate reticulum	4
stomach	161
strand of hair	2
stratum basale of epidermis	1
stratum intermedium of tooth	4
striatum	142
stroma	42
structure with developmental contribution from neural crest	1923
subcapsular sinus of lymph node	3
subcommissural organ	1
subcutaneous adipose tissue	44
subdivision of digestive tract	1157
subdivision of head	26
subdivision of oviduct	89
subdivision of skeletal system	6
subdivision of skeleton	26
subdivision of tube	1251
subiculum	1
submandibular gland	7
substantia nigra	61
subthalamic nucleus	35
sulcus	10
superior colliculus	17
surface structure	102
sympathetic ganglion	8
syncytiotrophoblast	1
systemic artery	25
telencephalic nucleus	75
telencephalon	84
temporal lobe	17
tergum	1
testis	227
thalamic complex	2
thick ascending limb of loop of Henle	3
thoracic cavity blood vessel	58
thoracic cavity element	866
thoracic lymph node	6
thoracic segment blood vessel	25
thoracic segment organ	1370
thymus	108
thyroid gland	31
tissue	2492
tongue	7
tonsil	10
tonsil germinal center	1
tooth enamel organ	1
tooth row	1
tooth-like structure	18
torus longitudinalis	2
trachea	45
tracheal mucosa	18
tract of brain	8
transitional anatomical structure	2
transparent eye structure	1
transudate	17
transverse colon	36
trigeminal placode complex	3
trophectoderm	5
trophoblast	8
trunk blood vessel	30
trunk connective tissue	57
trunk ganglion	8
trunk mesoderm derivative	3
trunk region element	3457
tube	500
tunica intima	5
umbilical cord blood	69
unilaminar epithelium	106
upper respiratory tract epithelium	7
upper rhombic lip	1
ureter	8
ureteric bud	2
ureteric bud tip	3
urethra	4
urinary bladder	62
Urothelial organoid	10
urothelium	15
urothelium of ureter	2
uterine cervix	18
uterus	64
utricle of membranous labyrinth	6
vagina	4
vagus X ganglion	24
vas deferens	2
vasa recta descending limb	1
vascular plexus	31
vasculature	103
vasculature of central nervous system	31
vasculature of central nervous system plus retina	31
vasculature of integument	7
vasculature of organ	32
vasculature of trunk	1
vastus lateralis	28
vault of skull	25
vein	2
vein of abdomen	1
venous blood vessel	2
ventral body wall	1
ventral ectoderm derivative	1
ventral epidermis primordium	1
ventral horn of spinal cord	13
ventral part of telencephalon	1
ventral tegmental area	1
ventral thalamus	1
ventral zone	3
ventricular zone	4
vermiform appendix	17
vessel	278
vestibular organ	6
vestibulocochlear ganglion	1
visceral abdominal adipose tissue	57
visceral abdominal lymph node	44
visceral endoderm	4
visceral mesoderm derivative	3
viscus	648
visual processing part of nervous system	68
white adipose tissue	33
white pulp of spleen	1
wing disc	5
zona limitans intrathalamica	1
zone of bone organ	1
zone of long bone	1
zone of organ	162
zone of skin	107
zygote stage	1

Ontology	Marker gene sets
abnormal cell	173
absorptive cell	122
acid secreting cell	764
acidophil cell of pars distalis of adenohypophysis	2
acinar cell	44
acinar cell of salivary gland	4
activated CD4-positive, alpha-beta T cell	15
activated CD8-positive, alpha-beta T cell	11
activated CD8-positive, alpha-beta T cell, human	2
activated type II NK T cell	2
adaxial cell	3
adipose microvascular endothelial cell	1
adrenal gland glandular cell	7
adrenal medulla chromaffin cell	1
adrenergic neuron	1
adrenocorticotropic hormone secreting cell	1
adult skeletal muscle myoblast	1
afferent neuron	178
alarm substance cell	4
alpha-beta T cell	424
alternatively activated macrophage	35
alveolar macrophage	5
amacrine cell	38
amine precursor uptake and decarboxylation cell	16
androgen binding protein secreting cell	24
androgen secreting cell	6
antibody secreting cell	4
anucleate cell	4
aortic endothelial cell	6
aortic smooth muscle cell	3
appendix glandular cell	1
arcade cell	6
astrocyte	167
astrocyte of the cerebellum	3
astrocyte of the cerebral cortex	4
astrocyte of the forebrain	1
astrocyte of the spinal cord	1
attachment cell	5
auditory epithelial cell	25
auditory epithelial support cell	24
auditory hair cell	10
autonomic neuron	12
B cell	179
B-2 B cell	4
barrier cell	850
basal cell	69
basal cell of epidermis	3
basal cell of epithelium of bronchus	2
basal cell of prostate epithelium	4
basal cell of urothelium	4
basket cell	1
basophil	21
basophil cell of pars distalis of adenohypophysis	3
basophil mast progenitor cell	4
basophil progenitor cell	3
beige adipocyte	1
Bergmann glial cell	6
biogenic amine secreting cell	107
bipolar neuron	45
bladder cell	4
bladder urothelial cell	2
blastoderm cell	2
blood cell	387
blood vessel endothelial cell	206
Bm4 B cell	10
bone cell	122
bone marrow cell	83
bone marrow hematopoietic cell	53
bone marrow macrophage	11
border cell of cochlea	3
border follicle cell	1
brain macroglial cell	1
brain pericyte	44
branched duct epithelial cell	67
bronchial epithelial cell	22
bronchial smooth muscle cell	2
brown fat cell	4
brush border epithelial cell	143
brush cell	20
brush cell of epithelium proper of large intestine	1
buccal mucosa cell	2
Cajal-Retzius cell	10
camera-type eye photoreceptor cell	22
cap cell	1
capillary endothelial cell	37
carbohydrate secreting cell	33
cardiac blood vessel endothelial cell	7
cardiac endothelial cell	45
cardiac glial cell	1
cardiac mesenchymal cell	8
cardiac muscle cell	80
cardiac muscle myoblast	3
cardiac myoblast	3
cardinal organ part	8
cardinal part of multi-tissue plant structure	8
cardioblast	10
cardiocyte	197
CD115-positive monocyte OR common dendritic progenitor	2
CD14-low, CD16-positive monocyte	5
CD14-positive monocyte	18
CD14-positive, CD16-low monocyte	1
CD14-positive, CD16-negative classical monocyte	2
CD14-positive, CD16-positive monocyte	4
CD141-positive myeloid dendritic cell	1
CD16-negative, CD56-bright natural killer cell	5
CD16-positive myeloid dendritic cell	1
CD16-positive, CD56-dim natural killer cell	15
CD1c-positive myeloid dendritic cell	2
CD34-positive, CD38-negative multipotent progenitor cell	1
CD4-positive helper T cell	3
CD4-positive, alpha-beta cytotoxic T cell	5
CD4-positive, alpha-beta memory T cell	7
CD4-positive, alpha-beta T cell	56
CD4-positive, CD25-positive, alpha-beta regulatory T cell	17
CD4-positive, CD8-intermediate double-positive thymocyte	1
CD56-negative, CD161-positive immature natural killer cell	2
CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor	23
CD8-positive, alpha-beta cytokine secreting effector T cell	2
CD8-positive, alpha-beta cytotoxic T cell	5
CD8-positive, alpha-beta memory T cell	11
CD8-positive, alpha-beta T cell	86
CD94-positive natural killer cell	2
cell of skeletal muscle	45
central memory CD4-positive, alpha-beta T cell	11
central memory CD8-positive, alpha-beta T cell	5
central nervous system macrophage	202
central nervous system neuron	399
central nervous system pericyte	45
central root cap	1
centripetally migrating follicle cell	1
cerebellar granule cell	8
cerebellar neuron	32
cerebellum glutamatergic neuron	2
cerebral cortex endothelial cell	7
cerebral cortex GABAergic interneuron	6
cerebral cortex glial cell	5
cerebral cortex neuron	47
chemoreceptor cell	43
cholangiocyte	12
cholinergic neuron	64
chondrocyte	33
choroid plexus epithelial cell	3
chromaffin cell	16
chromaffin cell of adrenal gland	1
chromophil cell of anterior pituitary gland	5
ciliated cell	253
ciliated cell of the bronchus	2
ciliated columnar cell of tracheobronchial tree	8
ciliated epithelial cell	205
ciliated olfactory receptor neuron	1
circulating cell	6
class switched memory B cell	2
classical monocyte	15
Claudius cell	2
clear cell of eccrine sweat gland	1
club cell	20
CNS interneuron	11
CNS neuron (sensu Nematoda and Protostomia)	6
CNS neuron (sensu Vertebrata)	255
cochlear inner hair cell	3
coelomocyte	6
cold sensing thermoreceptor cell	1
collagen secreting cell	33
colon endothelial cell	2
colon epithelial cell	3
colon glandular cell	2
columella	2
columnar cell of endocervix	1
columnar/cuboidal epithelial cell	328
common lymphoid progenitor	14
common myeloid progenitor	4
common myeloid progenitor, CD34-positive	1
companion cell	1
cone retinal bipolar cell	16
conjunctival epithelial cell	21
connective tissue cell	913
contractile cell	844
conventional dendritic cell	71
copper accumulating cell	1
cortex	7
cortical cell of adrenal gland	6
cortical granule cell	5
cortical thymic epithelial cell	3
corticotroph	1
crypt olfactory receptor neuron	1
crystallin accumulating cell	6
cumulus cell	6
cytotoxic T cell	2
dark cell of eccrine sweat gland	1
decidual cell	5
decidual natural killer cell	5
defensive cell	831
Deiter's cell	3
dendritic cell	309
dendritic cell, human	18
dentate gyrus of hippocampal formation granule cell	2
distal tip cell (sensu Nematoda)	2
DN1 thymic pro-T cell	2
dopaminergic neuron	34
double negative thymocyte	3
duct epithelial cell	126
duodenum glandular cell	1
early embryonic cell	3
early lymphoid progenitor	7
early pro-B cell	1
eccrine cell	2
ecto-epithelial cell	289
ectodermal cell	20
effector CD4-positive, alpha-beta T cell	1
effector memory CD4-positive, alpha-beta T cell	10
effector memory CD8-positive, alpha-beta T cell	18
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4
effector T cell	2
efferent neuron	24
electrically active cell	7454
electrically responsive cell	4096
electrically signaling cell	3358
elicited macrophage	67
embryonic cell	149
embryonic fibroblast	4
embryonic stem cell	34
endo-epithelial cell	444
endocardial cell	15
endocrine cell	301
endocrine-paracrine cell of prostate gland	4
endodermal cell	28
endodermis	7
endopolyploid cell	58
endorphin secreting cell	8
endothelial cell	780
endothelial cell of artery	51
endothelial cell of coronary artery	6
endothelial cell of hepatic sinusoid	8
endothelial cell of high endothelial venule	1
endothelial cell of lymphatic vessel	36
endothelial cell of sinusoid	8
endothelial cell of vascular tree	342
endothelial cell of venule	3
endothelial cell of viscerocranial mucosa	3
endothelial stalk cell	34
endothelial tip cell	27
enkephalin secreting cell	8
enteric neuron	10
enteric smooth muscle cell	1
enterocyte	121
enterocyte of epithelium of large intestine	5
enterocyte of epithelium of small intestine	36
enteroendocrine cell	134
eosinophil	14
eosinophil progenitor cell	3
ependymal cell	48
epiblast cell	13
epicardial adipocyte	7
epidermal cell	13
epidermal cell	135
epidermal cell (sensu arthropoda)	1
epidermis	1
epidermoblast	1
epididymis glandular cell	1
epithelial cell	4112
epithelial cell of alimentary canal	302
epithelial cell of alveolus of lung	70
epithelial cell of appendix	1
epithelial cell of cervix	3
epithelial cell of distal tubule	7
epithelial cell of esophagus	3
epithelial cell of exocrine pancreas	51
epithelial cell of gall bladder	1
epithelial cell of large intestine	20
epithelial cell of lower respiratory tract	34
epithelial cell of lung	129
epithelial cell of nephron	212
epithelial cell of pancreas	139
epithelial cell of prostate	17
epithelial cell of proximal tubule	20
epithelial cell of skin gland	2
epithelial cell of small intestine	58
epithelial cell of stomach	29
epithelial cell of sweat gland	2
epithelial cell of thymus	40
epithelial cell of thyroid gland	3
epithelial cell of tracheobronchial tree	34
epithelial cell of uterus	8
epithelial fate stem cell	84
erythroblast	55
erythrocyte	44
erythroid lineage cell	207
erythroid progenitor cell	8
erythroid progenitor cell, mammalian	2
excitatory neuron	105
excretory cell	80
exocrine cell	51
extracellular matrix secreting cell	97
extraembryonic cell	73
extravillous trophoblast	12
eye photoreceptor cell	23
fast muscle cell	2
fat cell	40
female germ cell	18
fenestrated cell	17
fetal cardiomyocyte	5
fibroblast	320
fibroblast neural crest derived	1
fibroblast of cardiac tissue	44
fibroblast of connective tissue of prostate	1
fibroblast of dermis	2
fibroblast of lung	47
fibroblast of mammary gland	11
fibrocyte	7
flatworm hypodermal cell	24
follicle stem cell	2
follicular B cell	4
follicular cell of ovary	21
follicular dendritic cell	3
forebrain neuroblast	1
Fraction A pre-pro B cell	2
GABAergic interneuron	26
GABAergic neuron	363
gall bladder glandular cell	1
gamete	4
gamma-delta T cell	10
gamma-delta thymocyte	1
gastric goblet cell	2
gastrin secreting cell	2
general ecto-epithelial cell	145
germ cell	263
germ line cell	318
germ line stem cell	22
germ line stem cell (sensu Vertebrata)	11
germinal center B cell	15
gestational hematopoietic stem cell	4
ghrelin secreting cell	4
glandular cell of endometrium	2
glandular cell of stomach	28
glandular cell of the large intestine	6
glandular epithelial cell	379
glial cell	736
glial cell (sensu Nematoda and Protostomia)	65
glial cell (sensu Vertebrata)	640
glioblast	2
glomerular cell	64
glomerular endothelial cell	15
glomerular visceral epithelial cell	32
glucagon secreting cell	26
glucocorticoid secreting cell	1
glutamatergic neuron	395
glycinergic neuron	1
glycosaminoglycan secreting cell	33
goblet cell	53
gonadtroph	1
granule cell	33
granulocyte	322
granulocyte monocyte progenitor cell	23
granulocytopoietic cell	18
granulosa cell	14
ground tissue cell	3
group 1 innate lymphoid cell	188
group 2 innate lymphoid cell	14
group 2 innate lymphoid cell, mouse	4
group 3 innate lymphoid cell	7
gut absorptive cell	121
gut endothelial cell	3
hair follicle cell	19
hair follicle dermal papilla cell	1
hair follicle dermal papilla cell of scalp	1
haploid cell	78
hatching gland cell	3
heart valve cell	10
helper T cell	3
hemangioblast	3
hematopoietic cell	7960
hematopoietic lineage restricted progenitor cell	66
hematopoietic multipotent progenitor cell	27
hematopoietic oligopotent progenitor cell	57
hematopoietic oligopotent progenitor cell, lineage-negative	23
hematopoietic precursor cell	253
hematopoietic stem cell	75
hemocyte (sensu Nematoda and Protostomia)	4
Hensen cell	3
hepatic pit cell	13
hepatic stellate cell	7
hepatic stem cell	2
hepatocyte	58
hippocampal granule cell	3
hippocampal neuron	14
hippocampal pyramidal neuron	10
histamine secreting cell	77
histaminergic neuron	1
Hofbauer cell	2
hypertrophic chondrocyte	2
hypothalamus native cell	2
IgA plasma cell	1
IgG plasma cell	1
IgM plasma cell	1
ILC1	5
immature B cell	7
immature conventional dendritic cell	1
immature microglial cell	1
immature natural killer cell	1
immature NK T cell	15
immature T cell	17
induced T-regulatory cell	7
inflammatory cell	4
inflammatory macrophage	31
inhibitory interneuron	47
inhibitory neuron	68
initial cell	2
innate lymphoid cell	233
inner cell mass native cell	5
inner phalangeal cell	3
inner renal cortex cell	1
insulating cell	2
insulin secreting cell	30
interdental cell of cochlea	3
interfollicle cell	1
intermediate mesodermal cell	1
intermediate monocyte	6
interneuron	252
interstitial cell of Cajal	2
intestinal crypt stem cell	2
intestinal enteroendocrine cell	18
intestinal epithelial cell	253
intraepithelial lymphocyte	1
ionocyte	11
iron accumulating cell	1
juxtaglomerular complex cell	1
Kenyon cell	6
keratin accumulating cell	42
keratinized cell of hair follicle	2
keratinized cell of the oral mucosa	2
keratinized squamous cell of esophagus	1
keratinizing barrier epithelial cell	42
keratinocyte	41
keratinocyte stem cell	3
kidney blood vessel cell	1
kidney capillary endothelial cell	1
kidney cell	353
kidney collecting duct cell	38
kidney collecting duct epithelial cell	25
kidney collecting duct intercalated cell	13
kidney collecting duct principal cell	10
kidney connecting tubule epithelial cell	1
kidney corpuscule cell	64
kidney cortex collecting duct epithelial cell	2
kidney cortex collecting duct principal cell	2
kidney cortex tubule cell	52
kidney cortical cell	64
kidney distal convoluted tubule epithelial cell	5
kidney epithelial cell	334
kidney interstitial cell	16
kidney loop of Henle ascending limb epithelial cell	3
kidney loop of Henle descending limb epithelial cell	1
kidney loop of Henle epithelial cell	18
kidney medulla cell	4
kidney outer medulla cell	3
kidney proximal convoluted tubule epithelial cell	1
kidney proximal straight tubule epithelial cell	3
kidney tubule cell	107
Kit and Sca1-positive hematopoietic stem cell	2
Kit-positive granulocyte monocyte progenitor	3
Kupffer cell	20
Langerhans cell	8
large intestine goblet cell	5
large luteal cell	1
late pro-B cell	4
lateral root	1
lateral root cap	1
lens epithelial cell	1
lens fiber cell	1
leptomeningeal cell	24
leucophore	4
leukocyte	5415
Leydig cell	34
lining cell	848
liver dendritic cell	1
long term hematopoietic stem cell	1
lower urinary tract cell	6
luminal cell of prostate epithelium	4
luminal epithelial cell of mammary gland	27
lung ciliated cell	2
lung endothelial cell	46
lung goblet cell	1
lung macrophage	90
lung microvascular endothelial cell	1
lung neuroendocrine cell	3
lung secretory cell	35
luteal cell	7
luteinizing hormone secreting cell	1
lymphocyte	2095
lymphocyte of B lineage	461
lymphoid lineage restricted progenitor cell	14
lysozyme secreting cell	27
M cell of gut	3
macroglial cell	364
macrophage	783
male gamete	4
male germ cell	236
male germ line stem cell	11
male germ line stem cell (sensu Vertebrata)	11
mammary alveolar cell	4
mammary gland epithelial cell	34
mammary gland glandular cell	5
mammotroph	1
marginal zone B cell	2
mast cell	76
mast cell progenitor	2
mature alpha-beta T cell	422
mature B cell	47
mature conventional dendritic cell	2
mature microglial cell	7
mature natural killer cell	5
mature neutrophil	1
mature NK T cell	11
mature T cell	578
mechanoreceptor cell	28
medium spiny neuron	50
medullary thymic epithelial cell	34
megakaryocyte	19
megakaryocyte progenitor cell	14
megakaryocyte-erythroid progenitor cell	16
melanocyte	25
melanocyte of skin	10
melanocyte stimulating hormone secreting cell	1
memory B cell	10
memory regulatory T cell	11
memory T cell	94
meristematic cell	2
mesangial cell	6
mesangial phagocyte	5
mesenchymal cell	83
mesenchymal stem cell	31
mesenchymal stem cell of adipose	1
meso-epithelial cell	976
mesodermal cell	47
mesothelial cell	68
metabolising cell	58
metal ion accumulating cell	2
metamyelocyte	1
metanephric mesenchyme stem cell	1
microfold cell of epithelium of small intestine	2
microglial cell	187
microvascular endothelial cell	3
midbrain dopaminergic neuron	1
milk secreting cell	4
mineralocorticoid secreting cell	1
mitogenic signaling cell	3
mitral cell	6
monocyte	290
mononuclear cell	2696
mononuclear cytotrophoblast cell	15
mononuclear phagocyte	10
monopoietic cell	2
motile cell	5414
motor neuron	5
mucosal invariant T cell	6
mucous cell of stomach	9
mucous neck cell	3
mucus neck cell of gastric gland	2
mucus secreting cell	61
Muller cell	10
multi fate stem cell	168
multi-ciliated epithelial cell	10
multi-potent skeletal muscle stem cell	9
multi-tissue plant structure	59
multinucleate cell	35
mural cell	118
muscle cell	678
muscle precursor cell	42
myelin accumulating cell	2
myelinating Schwann cell	2
myelocyte	1
myeloid cell	1842
myeloid dendritic cell	12
myeloid dendritic cell, human	2
myeloid leukocyte	1503
myeloid lineage restricted progenitor cell	49
myoblast	19
myocardial endocrine cell	4
myoepithelial cell	15
myoepithelial cell of lactiferous gland	2
myoepithelial cell of mammary gland	2
myofibroblast cell	34
myotube	6
naive B cell	9
naive regulatory T cell	4
naive T cell	47
naive thymus-derived CD4-positive, alpha-beta T cell	25
naive thymus-derived CD8-positive, alpha-beta T cell	11
native plant cell	18
natural killer cell	183
natural T-regulatory cell	3
neoplastic cell	173
nephrogenic mesenchyme stem cell	4
nephron tubule epithelial cell	52
neural cell	4503
neural crest cell	3
neural progenitor cell	10
neurecto-epithelial cell	106
neuroblast (sensu Vertebrata)	28
neuroendocrine cell	30
neuromast hair cell	3
neuromast mantle cell	2
neuromast support cell	9
neuron	3388
neuron associated cell	867
neuron associated cell (sensu Vertebrata)	131
neuron neural crest derived	10
neuron of cerebral cortex	59
neuron of the forebrain	78
neuronal brush cell	3
neuronal receptor cell	68
neuronal stem cell	42
neuroplacodal cell	2
neutrophil	251
neutrophil progenitor cell	4
nitrergic neuron	3
non-branched duct epithelial cell	25
non-classical monocyte	14
non-hair root epidermal cell	6
non-striated muscle cell	250
non-terminally differentiated cell	103
noradrenergic cell	11
noradrenergic neuron	11
notochordal cell	2
nucleate cell	6292
nucleated thrombocyte	2
olfactory bulb interneuron	11
olfactory bulb tufted cell	6
olfactory granule cell	7
olfactory receptor cell	28
oligodendrocyte	180
oligodendrocyte precursor cell	129
oocyte	14
oral mucosa squamous cell	1
organ of Corti supporting cell	14
osteoblast	17
osteoclast	9
outer hair cell	4
ovarian follicle cell	18
ovarian surface epithelial cell	20
oviduct glandular cell	5
oxygen accumulating cell	44
pain receptor cell	12
pancreas exocrine glandular cell	22
pancreatic A cell	24
pancreatic acinar cell	21
pancreatic centro-acinar cell	1
pancreatic D cell	12
pancreatic ductal cell	28
pancreatic endocrine cell	89
pancreatic epsilon cell	4
pancreatic PP cell	8
pancreatic stellate cell	5
paneth cell	27
paneth cell of epithelium of small intestine	3
parathyroid glandular cell	2
parenchyma	3
parenchyma cell	1
parietal cell	5
parietal epithelial cell	16
peptic cell	5
peptide hormone secreting cell	104
peptidergic neuron	34
pericycle	2
pericycle cell	2
pericyte cell	117
peridermal cell	4
periglomerular cell	3
perineuronal satellite cell	2
peripheral nervous system neuron	12
peripheral neuron	1
peritubular myoid cell	7
perivascular macrophage	10
phagocyte	821
phagocyte (sensu Nematoda and Protostomia)	10
phagocyte (sensu Vertebrata)	10
phalangeal cell	6
phloem	5
phloem pole pericycle cell	1
photoreceptor cell	34
photosynthetic cell	1
pigment cell	51
pillar cell	5
pituicyte	1
pituitary gland cell	8
placental amniotic mesenchymal stromal cell	2
placental hematopoietic stem cell	1
placental villous trophoblast	11
plant anatomical entity	115
plant axis	59
plant cell	18
plant organ	59
plant structure	115
plasma cell	135
plasmablast	4
plasmacytoid dendritic cell	35
plasmacytoid dendritic cell, human	2
platelet	4
pluripotent stem cell	12
pneumocyte	70
podocyte (sensu Diptera)	1
polar body	1
polyploid cell	58
portion of ground tissue	19
portion of meristem tissue	1
portion of plant tissue	30
portion of vascular tissue	7
PP cell	9
pre-natural killer cell	1
preadipocyte	7
preameloblast	2
precursor B cell	12
precursor cell	1163
preosteoblast	1
prickle cell	2
primary neuron	2
primary sensory neuron	2
primitive erythroid lineage cell	71
primitive erythroid progenitor	9
primitive red blood cell	62
primordial germ cell	20
pro-B cell	8
pro-NK cell	1
pro-T cell	2
proerythroblast	3
professional antigen presenting cell	1146
progenitor cell of endocrine pancreas	32
progesterone secreting cell	7
prolactin secreting cell	1
promonocyte	2
prostate gland microvascular endothelial cell	1
prostate stem cell	1
protein secreting cell	137
pulmonary interstitial fibroblast	8
Purkinje cell	19
pyramidal neuron	41
radial glial cell	53
receptor cell	85
rectum glandular cell	1
red muscle cell	1
regular atrial cardiac myocyte	6
regular cardiac myocyte	6
regulatory T cell	73
renal alpha-intercalated cell	3
renal beta-intercalated cell	3
renal cortical epithelial cell	62
renal filtration cell	32
renal intercalated cell	36
renal interstitial pericyte	2
renal principal cell	21
respiratory basal cell	13
respiratory epithelial cell	51
respiratory goblet cell	4
reticular cell	6
reticulocyte	1
retina horizontal cell	12
retinal bipolar neuron	39
retinal blood vessel endothelial cell	4
retinal cell	167
retinal cone cell	11
retinal ganglion cell	59
retinal pigment epithelial cell	12
retinal progenitor cell	9
retinal rod cell	11
rod bipolar cell	3
Rohon-Beard neuron	2
root	59
root cap	1
root cortex	5
root endodermis	2
root epidermal cell	13
root epidermis	1
root hair cell	7
root initial cell	2
root meristem	1
root parenchyma	3
root stele	6
salivary gland cell	1
salivary gland glandular cell	5
Schwann cell	22
Schwann cell precursor	2
seam cell	13
sebaceous gland native cell	2
secondary lymphoid organ macrophage	1
secondary spermatocyte	1
secretory cell	2662
seminal vesicle glandular cell	1
seminiferous tubule epithelial cell	31
sensory epithelial cell	29
sensory hair cell	13
sensory neuron	176
sensory neuron of dorsal root ganglion	2
seromucus secreting cell	61
serotonergic neuron	6
serotonin secreting cell	18
Sertoli cell	24
sheath cell	3
sheath cell (sensu Nematoda)	3
short term hematopoietic stem cell	1
simple columnar epithelial cell	1
single fate stem cell	85
single nucleate cell	1906
skeletal muscle fiber	4
skeletal muscle myoblast	4
skeletal muscle satellite cell	17
skeletal muscle satellite stem cell	1
skin fibroblast	13
Slamf1-negative multipotent progenitor cell	1
Slamf1-positive multipotent progenitor cell	1
slow muscle cell	1
small intestine glandular cell	14
small intestine goblet cell	10
small luteal cell	1
smooth muscle cell	250
smooth muscle cell of prostate	1
smooth muscle cell of the coronary artery	3
smooth muscle myoblast	3
somatic stem cell	191
somatostatin secreting cell	14
somatotroph	1
somatotropin secreting cell	1
specialized cardiac myocyte	4
sperm	4
spermatid	73
spermatocyte	70
spermatogonium	67
spinal cord oligodendrocyte	1
spiral ganglion neuron	30
splenic endothelial cell	1
splenic macrophage	1
splenocyte	3
spongiotrophoblast cell	4
squamous epithelial cell	338
stele	8
stem cell	478
stem cell of epidermis	6
steroid hormone secreting cell	35
stomach enteroendocrine cell	1
stratified epithelial cell	42
stratified squamous epithelial cell	42
stretch receptor cell	1
striated muscle cell	87
stromal cell	387
stromal cell of bone marrow	1
stromal cell of endometrium	2
stromal cell of ovary	19
stuff accumulating cell	776
support cell (sensu Nematoda and Protostomia)	5
support cell (sensu Nematoda)	3
supporting cell of cochlea	23
supportive cell	171
surface mucosal cell of stomach	4
surfactant secreting cell	50
sweat secreting cell	3
sympathetic neuron	1
syncytiotrophoblast cell	6
T cell	1375
T follicular helper cell	10
T-helper 1 cell	11
T-helper 17 cell	22
T-helper 2 cell	6
tanycyte	12
tendon cell	5
terminal Schwann cell	1
testosterone secreting cell	35
theca cell	5
thecogen cell	1
thermoreceptor cell	9
thymocyte	14
thyroid follicular cell	3
thyrotroph	1
tip cell	1
tissue-resident macrophage	247
tonsil germinal center B cell	1
tormogen cell	1
totipotent stem cell	13
touch receptor cell	3
transitional epithelial cell	15
transporting cell	6
trophectodermal cell	5
trophoblast cell	63
trophoblast giant cell	3
type A cell of stomach	2
type A enteroendocrine cell	26
type B pancreatic cell	29
type D cell of stomach	2
type D enteroendocrine cell	14
type EC enteroendocrine cell	6
type G enteroendocrine cell	2
type I cell of adrenal cortex	1
type I NK T cell	7
type I pneumocyte	29
type II cell of adrenal cortex	1
type II muscle cell	1
type II pneumocyte	30
type IIa muscle cell	1
type III cell of adrenal cortex	1
type S enteroendocrine cell	2
urethra cell	2
urothelial cell	13
uterine cervix glandular cell	1
uterine smooth muscle cell	1
valve cell	10
vascular associated smooth muscle cell	97
vein endothelial cell	16
ventricular cardiac muscle cell	1
vertebrate lens cell	4
vestibular dark cell	2
visceral muscle cell	250
visual pigment cell	12
visual system neuron	39
white fat cell	9
xanthophore cell	2
xylem	2
xylem pole pericycle cell	1
yolk sac hematopoietic stem cell	3

Species

Homo sapiens (12597)
Mus musculus (6785)
Danio rerio (956)
Caenorhabditis elegans (598)
Schmidtea mediterranea (527)
Drosophila melanogaster (393)
Nematostella vectensis (243)
Rattus norvegicus (175)
Xenopus tropicalis (171)
Arabidopsis thaliana (58)
Macaca fascicularis (56)

Publications

2020
- Stewart et al. Science (80)
- Guo et al. CellStemCell (20)
- Wang et al. JExpMed (28)
- Chen et al. NatureBiotech (41)
- Liang et al. NatureComm (8)
- Hung et al. PNAS (22)
- Ma et al. Cell (171)
- Kalucka et al. Cell (78)
- Johnson et al. DevCell (62)
- Zhang et al. Cell (55)
- Chen et al. eNeuro (7)
- Wang et al. NatureCellBiol (15)
- Slaidina et al. GeneDev (13)
- Schafflick et al. NatureComm (17)
- Rubenstein et al. ScientificRep (11)
- Kim et al. NatureComm (29)
- Horns et al. CellReports (1)
- Durante et al. NatureComm (30)
- Orozco et al. CellReports (11)
- Zhang et al. NatureComm (25)
- Wang et al. Cell (31)
- Sridhar et al. CellReports (23)
- He et al. JallergyClinImmunol (44)
- Wallace et al. Elife (22)
- Wen et al. NatureNeuroscience (21)
- Vijay et al. NatureMetab (42)
- vandenBrink et al. Nature (13)
- Hu et al. ScientificRep (7)
- Anderson et al. CellReports (69)
- Batiuk et al. NatureComm (6)
- Haensel et al. CellReports (29)
- Lehmann et al. JExpMed (13)
- Han et al. Nature (1710)
- Barruet et al. Elife (17)
- Kazer et al. NatureMed (12)
- Fujimoto et al. PlosBiol (4)
- Zakharov et al. JExpMed (24)
- Smith et al. BloodAdv (20)
- Cano-Gamez et al. NatureComm (22)
- Allen et al. Elife (120)
- Sole-Boldo et al. CommunBiol (17)
- Jevitt et al. PlosBiol (32)
- Zhao et al. CellDiscov (34)
- Qadir et al. PNAS (7)
- Kim et al. NatureComm (9)
- Psaila et al. MolCell (17)
- Liao et al. NatureMed (14)
- Kolla et al. NatureComm (59)
- Khrameeva et al. GenomeRes (16)
- Davidson et al. CellReports (13)
- Zhao et al. Angiogenesis (5)
- Karagiannis et al. NatureComm (26)
2019
- Ramachandran et al. Nature (55)
- Tran et al. DevCell (20)
- Popescu et al. Nature (27)
- Martin et al. Cell (34)
- Peyser et al. AmJRespirCellMolBiol (17)
- Hulin et al. Development (18)
- Neftel et al. Cell (8)
- Smillie et al. Cell (71)
- Tibbit et al. Immunity (6)
- Xiong et al. MolCell (10)
- Baron et al. Cell (7)
- Szabo et al. NatureComm (21)
- Menon et al. NatureComm (21)
- Kanaya et al. CommunBiol (33)
- Voigt et al. PNAS (24)
- Dobbie et al. CellReports (6)
- Zhao et al. Development (18)
- Pique-Regi et al. Elife (63)
- Jones et al. CellStemCell (8)
- Li et al. Cell (19)
- Blecher-Gonen et al. CellSystems (16)
- Kalamakis et al. Cell (9)
- vanGalen et al. Cell (9)
- Giordani et al. MolCell (10)
- Jean-Baptiste et al. PlantCell (17)
- Wang et al. CellStemCell (14)
- Zilionis et al. Immunity (127)
- Weng et al. CellStemCell (27)
- Mathys et al. Nature (12)
- Velmeshev et al. Science (34)
- Cui et al. CellReports (9)
- Hill et al. Development (52)
- Haremaki et al. NatureBiotech (9)
- Ruiz-Garcia et al. Development (18)
- Xiao et al. GenesDev (32)
- Aran et al. NatureImmuno (86)
- Uhlen et al. Science (430)
- Jung et al. Elife (12)
- Dulken et al. Nature (10)
- Ayyaz et al. Nature (38)
- Mizrak et al. CellRep (21)
- Loo et al. NatureComm (44)
- Xu et al. Elife (6)
- Combes et al. GenomeMed (18)
- Lawlor et al. Elife (16)
- Lush et al. Elife (14)
- Peng et al. JMCB (8)
- Sohni et al. CellRep (15)
- Wizeman et al. Elife (20)
- Miragaia et al. Immunity (44)
- Guerrero-Juarez et al. NatureComm (13)
- Pijuan-Sala et al. Nature (31)
- Cao et al. Nature (38)
- Hochane et al. PlosBiol (22)
- Angelidis et al. NatureComm (31)
- Guo et al. StemCellRep (23)
- Cheng et al. CellRep (3)
- Kumar et al. Development (7)
- Fang et al. CellRep (8)
- Guo et al. Development (18)
- Mucenski et al. SciRep (27)
- DellOrso et al. Development (20)
- Ernst et al. NatureComm (37)
- Ronning et al. ScientificRep (12)
- Grive et al. PlosGenetics (5)
- Stevant et al. CellRep (4)
- Farbehi et al. Elife (35)
- Nowotschin et al. Nature (17)
- Tikhonova et al. Nature (31)
- Zhang et al. MolPlant (24)
- Cosacak et al. CellRep (20)
- Xue et al. CellRep (9)
- Vladoiu et al. Nature (151)
- Zhang et al. CellRep (17)
- Telley et al. Science (15)
- Voigt et al. ExpEyeRes (18)
- Shulse et al. CellRep (17)
- Kupari et al. CellRep (24)
- Li et al. Development (26)
- Lewis et al. PNAS (9)
- Lukowski et al. CellRep (4)
- vanGurp et al. Development (10)
- Ponce et al. Development (9)
- Pellin et al. NatureComm (7)
- Lareau et al. NatureBiotech (27)
- Ponzetta et al. Cell (12)
- Janiszewska et al. NatureCellBiol (12)
- Hu et al. PlosBiol (11)
- Peng et al. CellRes (10)
- Wolock et al. CellRep (7)
- Aizarani et al. Nature (39)
- Polioudakis et al. Neuron (16)
- McCray et al. AJCEU (10)
- Fan et al. NatureComm (19)
- Bossel et al. NatureComm (19)
- deSoysa et al. Nature (44)
- Hovestadt et al. Nature (10)
- Segal et al. NatureComm (5)
- Wirka et al. NatureMed (32)
- Liu et al. CellRep (17)
- Culemann et al. Nature (13)
- Weinstock et al. Immunometab (15)
- LoGiudice et al. Development (14)
- Cheng et al. CellRep (26)
- Witt et al. Elife (9)
- Min et al. PNAS (2)
- Huisman et al. NatureComm (12)
- Zhou et al. Nature (3)
- Hodge et al. Nature (75)
- Adriaenssens et al. CellMetabolism (6)
- Deng et al. Development (5)
- Yu et al. JASN (31)
- Yang et al. NatureComm (12)
- Sharir et al. NatureCellBiol (18)
- Packer et al. Science (525)
- Zheng et al. CellRes (8)
- Wilson et al. PNAS (34)
- Bhattacherjee et al. NatureComm (30)
- Ximerakis et al. NatureNeuroscience (90)
- Wang et al. CancerDiscov (5)
- Santos et al. NatureComm (10)
- Jordao et al. Science (26)
- Hammond et al. Immunity (22)
2018
- Amiri et al. Science (15)
- Wang et al. CellStemCell (14)
- Petitpre et al. NatureComm (8)
- Song et al. ScientificRep (7)
- Hu et al. GenesDev (37)
- Byrnes et al. NatureComm (58)
- Wang et al. CellRep (13)
- Avey et al. CellRep (47)
- Owen et al. NatureComm (7)
- Cheung et al. Endocrinology (8)
- MacParland et al. NatureComm (20)
- Hermann et al. CellRep (129)
- Ariss et al. NatureComm (15)
- Zywitza et al. CellRep (17)
- Tepe et al. CellRep (56)
- Kretzschmar et al. PNAS (9)
- Krentz et al. StemCellRep (37)
- Ledergor et al. NatureMed (28)
- Li et al. Science (15)
- Collin et al. StemCells (9)
- Henry et al. CellRep (9)
- Tabib et al. JID (19)
- Hrvatin et al. NatureNeuroscience (31)
- Zemmour et al. NatureImmunology (6)
- Vanlandewijck et al. Nature (15)
- Gao et al. NatureCellBiol (40)
- Savas et al. NatureMed (10)
- Guo et al. NatureMed (22)
- Rheaume et al. NatureComm (40)
- Lindstrom et al. JASN (12)
- Cochain et al. CircRes (13)
- Rodda et al. Immunity (9)
- Karaiskos et al. JASN (15)
- Zuo et al. AJRCCM (3)
- Kernfeld et al. Immunity (23)
- Steuerman et al. CellSys (9)
- Zeng et al. Cell (22)
- Burl et al. CellMetabolism (17)
- Wu et al. JASN (16)
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mammary gland (194)
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Ammon's horn (106)
Brodmann area (49)

primary visual cortex (49)

allocortex (5)

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anterior cingulate cortex (6)
basal forebrain (19)
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cerebellum (52)
circumventricular organ (83)

secretory circumventricular organ (83)

median eminence of neurohypophysis (74)
neurohypophysis (7)
pineal body (1)
subcommissural organ (1)

dentate gyrus of hippocampal formation (44)
diencephalon (6)
dorsal plus ventral thalamus (54)
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functional part of brain (64)

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habenula (11)
hindbrain (33)
hippocampal field (17)

CA1 field of hippocampus (9)
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hippocampal formation (12)
hypothalamus (141)
midbrain (46)
midbrain tectum (1)
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pons (5)
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subiculum (1)
superior colliculus (17)
telencephalon (84)
torus longitudinalis (2)
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ventral part of telencephalon (1)
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ventral zone (3)

regional part of spinal cord (50)

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retina (262)
roof plate (2)
skin appendage follicle (58)

hair follicle (58)

skin gland (2)

epidermis gland (2)

sebaceous gland (2)

skin sebaceous gland (1)

skin of body (160)
spinal cord (164)
strand of hair (2)
stratum basale of epidermis (1)
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ventral ectoderm derivative (1)

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zone of skin (107)

endoderm-derived structure (1779)

alveolar system (14)
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liver (470)
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lung mesenchyme (8)
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urothelium of ureter (2)

nasal cavity mucosa (18)
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respiratory tube (58)

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visceral endoderm (4)

lateral structure (1650)

adrenal gland (120)
antenna (1)
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lung (815)
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brain blood vessel (1)
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sinusoid (3)

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trunk blood vessel (30)

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venous blood vessel (2)

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proximal convoluted tubule (4)
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mixed endoderm/mesoderm-derived structure (194)

epithelium of urethra (2)

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liver blood vessel (4)

central vein of liver (1)
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lung mesenchyme (8)
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prostate epithelium (10)
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urothelium of ureter (2)

muscle tissue (4)

smooth muscle tissue (4)

notochord (6)
omentum (32)
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perichordal tissue (1)
placenta (175)
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renal glomerulus (16)
secondary heart field (19)
seminal vesicle (4)
seminiferous tubule of testis (130)
serous membrane (41)

layer of synovial tissue (26)
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spleen pulp (2)

red pulp of spleen (1)
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subcutaneous adipose tissue (44)

panniculus adiposus (2)

trunk mesoderm derivative (3)

visceral mesoderm derivative (3)

cardiogenic mesoderm (3)

ureter (8)
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vagina (4)
vasa recta descending limb (1)

morphological feature (7)

anatomical projection (7)

integumentary projection (7)

cutaneous appendage (7)

hair shaft (5)
strand of hair (2)

anatomical conduit (808)

lymph node medullary sinus (1)
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tube (500)

bile duct (1)
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epididymis (4)
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epithelial layer of duct (5)

ureteric bud (2)
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epithelial sac (25)

imaginal disc (20)

wing disc (5)
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ureteric bud (2)
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epithelium of urethra (2)

epithelium of female urethra (1)

mesonephric tubule (5)

ureteric bud (2)
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nephric duct (4)

pronephric duct (4)

neural tube (2)
renal tubule (95)

nephron tubule (95)

descending limb of loop of Henle (1)
distal tubule (6)
loop of Henle (15)
renal connecting tubule (8)
ascending limb of loop of Henle (1)
distal convoluted tubule (10)
proximal convoluted tubule (4)
distal convoluted tubule (10)
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proximal straight tubule (1)
proximal tubule (29)
proximal straight tubule (1)
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excretory tube (135)

collecting duct of renal tubule (11)
epithelium of urethra (2)

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mesonephric tubule (5)

ureteric bud (2)
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nephric duct (4)

pronephric duct (4)

nephridium (11)

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renal tubule (94)

nephron tubule (94)

distal tubule (6)
loop of Henle (15)
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ascending limb of loop of Henle (1)
distal convoluted tubule (10)
proximal convoluted tubule (4)
distal convoluted tubule (10)
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proximal straight tubule (1)
proximal tubule (29)
proximal straight tubule (1)
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ureter (8)

oviduct (1)
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bronchus (13)
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seminiferous tubule of testis (130)
vas deferens (2)

urethra (4)
vessel (278)

blood vessel (251)

arterial blood vessel (102)

aorta (58)
artery (44)

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brain blood vessel (1)
great vessel of heart (58)

aorta (58)

thoracic cavity blood vessel (58)

aorta (58)

trunk blood vessel (30)

abdominal segment blood vessel (5)

central vein of liver (1)
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central vein of liver (1)

thoracic segment blood vessel (25)

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venous blood vessel (2)

vein (2)

hepatic portal vein (1)
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heart blood vessel (25)

coronary artery (25)

brain ventricle/choroid plexus (31)

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cell cluster (164)

cell cluster organ (62)

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cranial ganglion (28)

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ganglion of peripheral nervous system (8)

autonomic ganglion (8)

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sensory ganglion (18)

dorsal root ganglion (18)

lumbar dorsal root ganglion (11)

trunk ganglion (8)

paravertebral ganglion (8)

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islet of Langerhans (101)
tooth enamel organ (1)

dorsal ectoderm derivative (1)

dorsal epidermis primordium (1)

external soft tissue zone (147)

breast (141)

multi organ part structure (128)

cochlea (95)
internal ear (28)
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multi-tissue structure (1211)

compound organ component (7)

medulla of organ (7)

hair medulla (2)

epicardium (5)
notochord (6)
optic cup (3)
regional part of nervous system (1148)

regional part of brain (1098)

Ammon's horn (106)
Brodmann area (49)

primary visual cortex (49)

allocortex (5)

archicortex (5)

anterior cingulate cortex (6)
basal forebrain (19)
brainstem (1)
cerebellum (52)
circumventricular organ (83)

secretory circumventricular organ (83)

median eminence of neurohypophysis (74)
neurohypophysis (7)
pineal body (1)
subcommissural organ (1)

dentate gyrus of hippocampal formation (44)
diencephalon (6)
dorsal plus ventral thalamus (54)
epithalamus (1)
forebrain (5)
functional part of brain (64)

primary visual cortex (49)
somatosensory cortex (15)

habenula (11)
hindbrain (33)
hippocampal field (17)

CA1 field of hippocampus (9)
CA2 field of hippocampus (1)
CA3 field of hippocampus (7)

hippocampal formation (12)
hypothalamus (141)
midbrain (46)
midbrain tectum (1)
neocortex (101)
olfactory bulb (59)
pons (5)
preoptic area (66)
subiculum (1)
superior colliculus (17)
telencephalon (84)
torus longitudinalis (2)
upper rhombic lip (1)
ventral part of telencephalon (1)
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ventral zone (3)

regional part of spinal cord (50)

spinal cord segment (50)

lumbar spinal cord (50)

roof of mouth (1)

primitive palate (1)

serous membrane (41)

layer of synovial tissue (26)
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multicellular organism (1192)

embryo (117)

early embryo (3)

2-cell stage embryo (2)
4-8 cell stage embryo (1)

8-cell stage embryo (1)

gastrula (3)

larva (69)
post-embryonic organism (269)
brain (2953)

embryonic brain (2)

cell cluster organ (54)

ganglion (54)

cranial ganglion (28)

epibranchial ganglion (24)

vagus X ganglion (24)

vestibulocochlear ganglion (1)

sensory ganglion (18)

dorsal root ganglion (18)

lumbar dorsal root ganglion (11)

trunk ganglion (8)

paravertebral ganglion (8)

inferior cervical ganglion (8)

compound organ (1418)

cavitated compound organ (852)

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kidney (578)
spinal cord (164)

circulatory organ (498)

primary circulatory organ (498)

heart (498)

head kidney (48)
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digestive system gland (470)

liver (470)

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food storage organ (161)

stomach (161)

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gland of digestive tract (13)

oral gland (12)

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submandibular gland (7)

pharyngeal gland (1)

large intestine (26)
small intestine (151)
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tongue (7)
vermiform appendix (17)

dorsal region element (164)

spinal cord (164)

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embryonic cement gland (2)
endocrine gland (833)

adrenal/interrenal gland (120)

adrenal gland (120)

corpus luteum (3)
digestive system gland (470)

liver (470)

neuroendocrine gland (98)

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median eminence of neurohypophysis (74)
neurohypophysis (7)
pineal body (1)
subcommissural organ (1)

parathyroid gland (3)
thymus (108)
thyroid gland (31)

exocrine gland (695)

exocrine gland of integumental system (196)

mammary gland (194)
sebaceous gland (2)

skin sebaceous gland (1)

holocrine gland (2)

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skin sebaceous gland (1)

lacrimal gland (15)
liver (470)
oral gland (12)

saliva-secreting gland (12)

submandibular gland (7)

eye gland (15)

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gland of diencephalon (97)

median eminence of neurohypophysis (74)
neurohypophysis (7)
pineal body (1)
pituitary gland (15)

gland of digestive tract (13)

oral gland (12)

saliva-secreting gland (12)

submandibular gland (7)

pharyngeal gland (1)

gland of integumental system (198)

exocrine gland of integumental system (196)

mammary gland (194)
sebaceous gland (2)

skin sebaceous gland (1)

skin gland (2)

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skin sebaceous gland (1)

gland of ocular region (15)

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hatching gland (5)
hemolymphoid system gland (108)

thymus (108)

reproductive gland (52)

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male reproductive gland (49)

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respiratory system gland (1)

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head kidney (48)
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immune organ (433)

lymph node (190)

abdominal lymph node (44)

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membrane organ (30)

meninx (30)

brain meninx (1)
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arachnoid mater (3)

muscle organ (191)

branchiomeric muscle (1)
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skeletal muscle organ (188)

extensor muscle (6)

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limb muscle (89)

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placenta (175)
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ovary (154)

gonad (396)

ovary (154)
testis (227)

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testis (227)

respiration organ (815)

lung (815)

sense organ (68)

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eye (59)
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skeletal element (191)

bone element (89)

endochondral bone (42)

rib (42)

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rib (42)

membrane bone (5)

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lateral plate (5)

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endochondral bone (42)

rib (42)

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rib (42)

tooth-like structure (18)

calcareous tooth (18)

incisor tooth (18)

skin of body (160)
trunk region element (3457)

abdominal segment element (1439)

abdomen element (1427)

abdominal lymph node (44)

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abdominal viscera (167)

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adrenal gland (120)
head kidney (48)
kidney (578)
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inguinal lymph node (4)
pelvic region element (8)

ureter (8)

thoracic segment organ (1370)

heart (498)
thoracic cavity element (866)

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thoracic lymph node (6)

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viscus (648)

abdominal viscera (167)

gall bladder (32)
spleen (135)

pancreas (419)
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urethra (4)
vestibular organ (6)

otolith organ (6)

utricle of membranous labyrinth (6)

organ part (2211)

cardiac chamber (48)

cardiac atrium (12)

left cardiac atrium (2)
right cardiac atrium (4)

cardiac ventricle (14)

heart left ventricle (9)
heart right ventricle (4)

left cardiac chamber (11)

heart left ventricle (9)
left cardiac atrium (2)

right cardiac chamber (8)

heart right ventricle (4)
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sinus venosus (3)

cortex (5)

cortex of hair (1)

descending thin limb (4)
integumentary adnexa (9)

integumentary projection (7)

cutaneous appendage (7)

hair shaft (5)
strand of hair (2)

skin gland (2)

epidermis gland (2)

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lobe of cerebral hemisphere (17)

temporal lobe (17)

medulla oblongata (1)
nephron (14)
organ component layer (376)

capillary layer of choroid (1)
heart layer (12)

endocardium (5)
myocardium (7)

integumentary system layer (47)

epidermis suprabasal layer (1)
hypodermis (43)
outer root sheath companion layer (2)
stratum basale of epidermis (1)

layer of muscle tissue (9)

muscular coat (2)

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myocardium (7)

membranous layer (4)

extraembryonic membrane (4)

allantois (3)
amnion (1)

mucosa (36)

mouth mucosa (9)

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reproductive system mucosa (9)

endometrium (9)

respiratory system mucosa (18)

tracheal mucosa (18)

nasal cavity mucosa (18)

photoreceptor array (262)

retina (262)

tunica intima (5)

endocardium (5)

organ subunit (203)

duct (145)

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bile duct (1)
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duct of male reproductive system (136)

epididymis (4)
seminiferous tubule of testis (130)
vas deferens (2)

renal duct (4)

nephric duct (4)

pronephric duct (4)

skin appendage follicle (58)

hair follicle (58)

parenchyma (46)

parenchyma of central nervous system (26)

pars intermedia of adenohypophysis (7)
pars tuberalis of adenohypophysis (7)
renal glomerulus (16)
spleen pulp (2)

red pulp of spleen (1)
white pulp of spleen (1)

stroma (42)

endometrial stroma (1)
extraglomerular mesangium (1)
interstitial tissue (7)

kidney interstitium (7)

subdivision of tube (1251)

cortical collecting duct (1)
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proximo-distal subdivision of respiratory tract (1)

nasopharynx (1)

renal medulla collecting duct (2)
subdivision of digestive tract (1157)

colon (201)
duodenum (22)
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foregut (3)
hindgut (4)
ileum (59)
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large intestine (26)
midgut (24)
pharynx (89)
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ascending colon (11)
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rectum (38)
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subdivision of oviduct (89)

fallopian tube (21)
uterus (64)
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vasa recta descending limb (1)
zone of organ (162)

neck of organ (18)

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omentum (32)
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primitive knot (4)

zone of bone organ (1)

zone of long bone (1)

epiphysis (1)

zone of skin (107)

organ system subdivision (501)

alveolar system (14)
central nervous system (250)
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tergum (1)

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musculature (129)

musculature of body wall (81)

subdivision of skeletal system (6)

primary subdivision of skull (6)

facial skeleton (6)

subdivision of skeleton (26)

dermal skeleton (1)
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visual processing part of nervous system (68)

superior colliculus (17)

organism subdivision (258)

anterior region of body (1)
appendage (14)

antenna (1)
fin (13)

median fin (4)

caudal fin (4)

autopodial extension (62)

digit (62)

body proper (146)
body wall (3)

ventral body wall (1)

jaw region (1)
mantle (4)
posterior region of body (1)
subdivision of head (26)

face (26)

reproductive structure (1301)

duct of male reproductive system (136)

epididymis (4)
seminiferous tubule of testis (130)
vas deferens (2)

endometrial stroma (1)
oviduct (1)
placenta (175)
prostate epithelium (10)
reproductive gland (52)

female reproductive gland (3)

corpus luteum (3)

male reproductive gland (49)

male accessory sex gland (45)

prostate gland (45)

seminal fluid secreting gland (4)

seminal vesicle (4)

reproductive organ (810)

external genitalia (1)

external female genitalia (1)

female reproductive organ (155)

external female genitalia (1)
ovary (154)

gonad (396)

ovary (154)
testis (227)

male reproductive organ (227)

testis (227)

reproductive system mucosa (9)

endometrium (9)

subdivision of oviduct (89)

fallopian tube (21)
uterus (64)
vagina (4)

uterine cervix (18)

secondary palatal shelf (1)
tissue (2492)

anlage (21)

primary heart field (2)
secondary heart field (19)

bone marrow (448)
connective tissue (460)

dense connective tissue (200)

dense irregular connective tissue (200)

adipose tissue (200)

visceral abdominal adipose tissue (57)
brown adipose tissue (13)
fat pad (8)
pararenal fat (1)
subcutaneous adipose tissue (42)
panniculus adiposus (2)
white adipose tissue (33)

irregular connective tissue (200)

dense irregular connective tissue (200)

adipose tissue (200)

visceral abdominal adipose tissue (57)
brown adipose tissue (13)
fat pad (8)
pararenal fat (1)
subcutaneous adipose tissue (42)
panniculus adiposus (2)
white adipose tissue (33)

perichordal tissue (1)
skeletal tissue (1)

cartilage tissue (1)

trunk connective tissue (57)

abdominal segment connective tissue (57)

abdomen connective tissue (57)

visceral abdominal adipose tissue (57)

dermal papilla (4)
embryonic tissue (327)

cranial neural crest (6)
dorsal lateral plate region (6)
enveloping layer of ectoderm (2)
external ectoderm (3)
eye primordium (3)
floor plate (5)
germ layer / neural crest (243)

germ layer (213)

ectoderm (10)
endoderm (37)
mesoderm (159)

pharyngeal mesoderm (3)
pronephric mesoderm (2)

neurectoderm (7)

neural crest (30)

head fold of embryonic disc (1)
head mesenchyme (2)

mesenchyme derived from head neural crest (2)

mesenchyme of fronto-nasal process (2)

lateral nasal process mesenchyme (2)

lateral plate mesoderm (4)
maxillary process mesenchyme (1)
mesenchyme from somatopleure (2)

paired limb/fin bud mesenchyme (2)

pectoral appendage bud mesenchyme (2)

nasolacrimal groove (2)
neural plate (8)
neural tube (2)
neural tube basal plate (1)
paraxial mesoderm (5)
pharyngeal pouch (1)
pre-chordal neural plate (5)
primary heart field (2)
primitive streak (2)
roof plate (2)
secondary heart field (19)

epithelium (1083)

atypical epithelium (7)

sensory epithelium (7)

olfactory epithelium (7)

breast epithelium (7)
ciliated epithelium (7)

ciliated columnar epithelium (7)

pseudostratified ciliated columnar epithelium (7)

olfactory epithelium (7)

columnar epithelium (76)

simple columnar epithelium (76)

ciliated columnar epithelium (7)

olfactory epithelium (7)

intestinal epithelium (57)

epithelium of crypt of Lieberkuhn of small intestine (19)
epithelium of small intestine (19)
epithelium of crypt of Lieberkuhn of small intestine (19)

primitive streak (2)
prostate epithelium (10)

digestive tract epithelium (85)

foregut epithelium (1)

endoderm of foregut (1)

pharyngeal pouch (1)

intestinal epithelium (57)

epithelium of crypt of Lieberkuhn (19)

epithelium of crypt of Lieberkuhn of small intestine (19)

epithelium of small intestine (38)

epithelium of crypt of Lieberkuhn of small intestine (19)

pharyngeal epithelium (1)

ecto-epithelium (137)

dental epithelium (16)

inner dental epithelium (4)
outer dental epithelium (5)
stellate reticulum (4)

dorsal thoracic disc (5)

wing disc (5)

enveloping layer of ectoderm (2)
eye epithelium (11)

pigmented layer of retina (11)

eye primordium (3)
eye-antennal disc (15)
neural plate (8)
neural tube (2)
nose epithelium (9)

nasal cavity epithelium (7)

olfactory epithelium (7)

nasolacrimal groove (2)

outer epithelium (51)

skin epidermis (51)

periderm (5)
skin epithelium (10)

hair follicle bulge (10)

endo-epithelium (39)

endoderm of foregut (1)

pharyngeal pouch (1)

epithelium of urethra (2)

epithelium of female urethra (1)

hepatic sinusoid (3)
pharyngeal epithelium (1)
prostate epithelium (10)
respiratory tract epithelium (7)

upper respiratory tract epithelium (7)

olfactory epithelium (7)

urothelium (15)

kidney pelvis urothelium (3)
urothelium of ureter (2)

epithelial furrow (1)
epithelial tube (137)

epithelial layer of duct (5)

ureteric bud (2)
ureteric bud tip (3)

epithelial sac (25)

imaginal disc (20)

wing disc (5)
eye-antennal disc (15)

ureteric bud (2)
ureteric bud tip (3)

epithelium of urethra (2)

epithelium of female urethra (1)

mesonephric tubule (5)

ureteric bud (2)
ureteric bud tip (3)

nephric duct (4)

pronephric duct (4)

neural tube (2)
renal tubule (94)

nephron tubule (94)

distal tubule (6)
loop of Henle (15)
renal connecting tubule (8)
ascending limb of loop of Henle (1)
distal convoluted tubule (10)
proximal convoluted tubule (4)
distal convoluted tubule (10)
proximal convoluted tubule (4)
proximal straight tubule (1)
proximal tubule (29)
proximal straight tubule (1)
thick ascending limb of loop of Henle (3)

epithelial vesicle (116)

renal vesicle (4)
somite (112)

epithelium of mucosa (64)

intestinal epithelium (57)

epithelium of crypt of Lieberkuhn (19)

epithelium of crypt of Lieberkuhn of small intestine (19)

epithelium of small intestine (38)

epithelium of crypt of Lieberkuhn of small intestine (19)

nasal cavity epithelium (7)

olfactory epithelium (7)

gastrointestinal system epithelium (57)

intestinal epithelium (57)

epithelium of crypt of Lieberkuhn (19)

epithelium of crypt of Lieberkuhn of small intestine (19)

epithelium of small intestine (38)

epithelium of crypt of Lieberkuhn of small intestine (19)

kidney epithelium (105)

endothelium of peritubular capillary (2)
kidney pelvis urothelium (3)
mesonephric epithelium (5)

mesonephric tubule (5)

ureteric bud (2)
ureteric bud tip (3)

nephric duct (4)

pronephric duct (4)

nephron epithelium (91)

glomerular epithelium (1)

glomerular endothelium (1)

nephron tubule (87)

loop of Henle (15)
renal connecting tubule (8)
distal convoluted tubule (10)
proximal convoluted tubule (4)
distal convoluted tubule (10)
proximal convoluted tubule (4)
proximal straight tubule (1)
proximal tubule (29)
proximal straight tubule (1)
thick ascending limb of loop of Henle (3)

meso-epithelium (65)

distal convoluted tubule (10)
endothelium (19)

cardiovascular system endothelium (11)

aorta endothelium (4)
aorta endothelium (4)
endothelium of peritubular capillary (2)
glomerular endothelium (1)

epithelium of urethra (2)

epithelium of female urethra (1)

glomerular epithelium (1)

glomerular endothelium (1)

mesonephric epithelium (5)

mesonephric tubule (5)

ureteric bud (2)
ureteric bud tip (3)

pronephric duct (4)
prostate epithelium (10)
proximal convoluted tubule (4)
renal connecting tubule (8)
urothelium of ureter (2)

multilaminar epithelium (15)

urothelium (15)

kidney pelvis urothelium (3)
urothelium of ureter (2)

respiratory system epithelium (8)

pharyngeal epithelium (1)
respiratory tract epithelium (7)

upper respiratory tract epithelium (7)

olfactory epithelium (7)

sensory organ epithelium (20)

nose epithelium (9)

nasal cavity epithelium (7)

olfactory epithelium (7)

nasolacrimal groove (2)

pigment epithelium of eye (11)

eye epithelium (11)

pigmented layer of retina (11)

squamous epithelium (16)

simple squamous epithelium (16)

endothelium (11)

glomerular endothelium (1)
endothelium of peritubular capillary (2)

periderm (5)

unilaminar epithelium (106)

endoderm of foregut (1)

pharyngeal pouch (1)

enveloping layer of ectoderm (2)
external ectoderm (3)
extraembryonic endoderm (5)
eye primordium (3)
nasolacrimal groove (2)
simple columnar epithelium (69)

intestinal epithelium (57)

epithelium of crypt of Lieberkuhn of small intestine (19)
epithelium of small intestine (19)
epithelium of crypt of Lieberkuhn of small intestine (19)

primitive streak (2)
prostate epithelium (10)

simple squamous epithelium (16)

endothelium (11)

glomerular endothelium (1)
endothelium of peritubular capillary (2)

periderm (5)

trophectoderm (5)

extraembryonic tissue (17)

extraembryonic endoderm (5)
extraembryonic mesoderm (2)
trophectoderm (5)
visceral endoderm (4)

hair root sheath (8)

hair inner root sheath (7)
hair outer root sheath (1)

heterogeneous tissue (33)

lymphomyeloid tissue (33)

hematopoietic tissue (19)
lymphoid tissue (14)

epithelium-associated lymphoid tissue (10)

tonsil (10)

germinal center (2)

lymph node germinal center (1)
tonsil germinal center (1)

lamina (23)

cell layer (12)

floor plate (5)
mesangium (1)
roof plate (2)
stratum intermedium of tooth (4)

pigmented layer of retina (11)

lateral line primordium (2)
mesenchyme (53)

dense mesenchyme tissue (13)

extraembryonic mesoderm (2)
lateral plate mesoderm (4)
mesenchyme from somatopleure (2)

paired limb/fin bud mesenchyme (2)

pectoral appendage bud mesenchyme (2)

paraxial mesoderm (5)

head mesenchyme (2)

mesenchyme derived from head neural crest (2)

mesenchyme of fronto-nasal process (2)

lateral nasal process mesenchyme (2)

limb mesenchyme (1)
lung mesenchyme (8)
maxillary process mesenchyme (1)
mesenchyme derived from neural crest (2)

mesenchyme derived from head neural crest (2)

mesenchyme of fronto-nasal process (2)

lateral nasal process mesenchyme (2)

muscle tissue (4)

smooth muscle tissue (4)

nephron progenitor (6)
non-neural ectoderm (1)
optic vesicle (2)

muscle structure (261)

muscle organ (191)

branchiomeric muscle (1)
pharyngeal muscle (1)
skeletal muscle organ (188)

extensor muscle (6)

extensor digitorum longus (6)

limb muscle (89)

hindlimb muscle (71)

extensor digitorum longus (6)
muscle of leg (7)

soleus muscle (7)

quadriceps femoris (28)

vastus lateralis (28)

pelvic complex muscle (71)

pelvic appendage muscle (71)

hindlimb muscle (71)

extensor digitorum longus (6)
soleus muscle (7)
vastus lateralis (28)

reticuloendothelial system (1)
sac (130)

bladder organ (110)

gall bladder (32)
urinary bladder (62)

epithelial sac (20)

imaginal disc (15)

eye-antennal disc (15)

ureteric bud (2)
ureteric bud tip (3)

septum (1)

cardiac septum (1)

interventricular septum (1)

structure with developmental contribution from neural crest (1923)

Ammon's horn (106)
Brodmann area (49)

primary visual cortex (49)

allocortex (5)

archicortex (5)

anterior cingulate cortex (6)
brainstem (1)
branchiomeric muscle (1)
calcareous tooth (18)

incisor tooth (18)

cerebellum (52)
cochlea (95)
cortex of hair (1)
cranial neural crest (6)
dental epithelium (16)

inner dental epithelium (4)
outer dental epithelium (5)
stellate reticulum (4)

dentate gyrus of hippocampal formation (44)
diencephalon (6)
hair follicle (58)
hair follicle bulge (10)
hair medulla (2)
hair root sheath (8)

hair inner root sheath (7)
hair outer root sheath (1)

hair shaft (5)
heart (498)
hindbrain (33)
hippocampal field (17)

CA1 field of hippocampus (9)
CA2 field of hippocampus (1)
CA3 field of hippocampus (7)

hippocampal formation (12)
infundibulum of hair follicle (1)
internal ear (28)
jaw region (1)
lacrimal gland (15)
lobe of cerebral hemisphere (17)

temporal lobe (17)

maxillary process mesenchyme (1)
medulla oblongata (1)
meninx (30)

brain meninx (1)
leptomeninx (29)

arachnoid mater (3)

midbrain (46)
midbrain-hindbrain boundary (1)
myocardium (7)
nasolacrimal groove (2)
neocortex (101)
neural crest (30)
neural crest-derived structure (187)

adrenal/interrenal gland (120)

adrenal gland (120)

capillary layer of choroid (1)
dorsal root ganglion (18)

lumbar dorsal root ganglion (11)

enteric nervous system (7)
facial skeleton (6)
leptomeninx (29)

arachnoid mater (3)

mesenchyme derived from neural crest (2)

mesenchyme derived from head neural crest (2)

mesenchyme of fronto-nasal process (2)

lateral nasal process mesenchyme (2)

secondary palatal shelf (1)
vestibulocochlear ganglion (1)

olfactory bulb (59)
otolith organ (6)

utricle of membranous labyrinth (6)

outer root sheath companion layer (2)
pituitary gland (15)
pons (5)
somatosensory cortex (15)
spinal cord (164)
strand of hair (2)
stratum basale of epidermis (1)
stratum intermedium of tooth (4)
subiculum (1)
submandibular gland (7)
telencephalon (84)
thyroid gland (31)
tongue (7)
tooth enamel organ (1)
upper rhombic lip (1)
ventral part of telencephalon (1)

surface structure (102)

external integument structure (51)

skin epidermis (51)

outer epithelium (51)

skin epidermis (51)

transparent eye structure (1)

anatomical surface region (1)

pit (1)

proctodeum (1)

developing anatomical structure (2184)

S-shaped body (7)
anlage (21)

primary heart field (2)
secondary heart field (19)

comma-shaped body (3)
embryonic structure (1895)

anterior neural tube (8)
atrioventricular canal (2)
blastocyst (5)
caudal ganglionic eminence (4)
chordal neural plate (5)
chordamesoderm (1)
chorionic villus (19)
cytotrophoblast (3)
definitive endoderm (1)
dorsal epidermis primordium (1)
early proximal tubule (1)
ectodermal placode (52)

cranial placode (42)

adenohypophyseal placode (2)
lens placode (4)
neurogenic placode (36)

dorsolateral placode (10)

lateral line placode (2)
otic placode (5)
trigeminal placode complex (3)

epibranchial placode (21)

geniculate placode (1)
nodosal placode (18)

olfactory placode (3)
profundal placode (2)

non-neurogenic ectodermal placode (10)

adenohypophyseal placode (2)
lens placode (4)
skin appendage placode (4)

hair follicle placode (4)

embryoid body (92)
epiblast (generic) (39)
ganglionic eminence (6)
germ layer / neural crest (243)

germ layer (213)

ectoderm (10)
endoderm (37)
mesoderm (159)

pharyngeal mesoderm (3)
pronephric mesoderm (2)

neurectoderm (7)

neural crest (30)

hypoblast (generic) (10)

anterior definitive endoderm (1)
inner cell mass derived hypoblast (9)

inner cell mass (7)
intermediate mesoderm (16)
lateral ganglionic eminence (1)
lateral plate mesoderm (4)
marginal zone of embryo (3)

involuting marginal zone (1)

medial ganglionic eminence (8)
metanephric cap (8)
pharyngeal pouch (1)
posterior neural tube (1)
prechordal plate (4)
presumptive cephalic mesoderm (1)
presumptive structure (64)

blood island (13)
eye primordium (3)
future central nervous system (10)

neural plate (8)
neural tube (2)

lateral line placode (2)
lens placode (4)
post-anal tail bud (13)
presomitic mesoderm (10)
presumptive retinal pigmented epithelium (2)
pronephric mesoderm (2)
rhombic lip (1)
skin appendage placode (4)

hair follicle placode (4)

primary heart field (2)
primitive knot (4)
secondary heart field (19)
syncytiotrophoblast (1)
trophoblast (8)
ventral epidermis primordium (1)

extraembryonic structure (69)

chorionic villus (19)
decidua (43)
extraembryonic ectoderm (4)
parietal endoderm (2)

immature eye (6)

lens placode (4)
presumptive retinal pigmented epithelium (2)

primordium (69)

dorsal epidermis primordium (1)
ectodermal placode (52)

cranial placode (42)

adenohypophyseal placode (2)
lens placode (4)
neurogenic placode (36)

dorsolateral placode (10)

lateral line placode (2)
otic placode (5)
trigeminal placode complex (3)

epibranchial placode (21)

geniculate placode (1)
nodosal placode (18)

olfactory placode (3)
profundal placode (2)

non-neurogenic ectodermal placode (10)

adenohypophyseal placode (2)
lens placode (4)
skin appendage placode (4)

hair follicle placode (4)

eye primordium (3)
heart primordium (1)
rhombic lip (1)
ventral epidermis primordium (1)

somite (112)
transitional anatomical structure (2)

parietal endoderm (2)

organism substance (543)

bodily fluid (543)

haemolymphatic fluid (526)

blood (524)

umbilical cord blood (69)

lymph (2)

transudate (17)

cerebrospinal fluid (17)

processual entity (579)

life cycle stage (579)

2 cell stage (1)
4 cell stage (1)
8 cell stage (1)
blastula stage (1)
embryo stage (229)
larval stage (76)
late embryonic stage (138)
neonate stage (131)
zygote stage (1)

root (58)

Cell Types

abnormal cell (173)

neoplastic cell (173)
absorptive cell (122)

gut absorptive cell (121)

enterocyte (121)

enterocyte of epithelium of large intestine (5)
enterocyte of epithelium of small intestine (36)

anucleate cell (4)

platelet (4)

barrier cell (850)

insulating cell (2)

myelinating Schwann cell (2)

lining cell (848)

endothelial cell (780)

cardiac endothelial cell (45)

cardiac blood vessel endothelial cell (7)

endothelial cell of coronary artery (6)

endocardial cell (15)

cerebral cortex endothelial cell (7)
colon endothelial cell (2)
endothelial cell of sinusoid (8)

endothelial cell of hepatic sinusoid (8)

endothelial cell of vascular tree (342)

blood vessel endothelial cell (206)

capillary endothelial cell (37)
cardiac blood vessel endothelial cell (7)

endothelial cell of coronary artery (6)

endothelial cell of artery (51)

aortic endothelial cell (6)
endothelial cell of coronary artery (6)

endothelial stalk cell (34)
endothelial tip cell (27)
kidney capillary endothelial cell (1)
microvascular endothelial cell (3)

adipose microvascular endothelial cell (1)
prostate gland microvascular endothelial cell (1)

retinal blood vessel endothelial cell (4)
vein endothelial cell (16)

endothelial cell of lymphatic vessel (36)
endothelial cell of venule (3)

endothelial cell of high endothelial venule (1)

lung endothelial cell (46)

lung microvascular endothelial cell (1)

glomerular endothelial cell (15)
gut endothelial cell (3)
splenic endothelial cell (1)

mesothelial cell (68)

seminiferous tubule epithelial cell (31)

Sertoli cell (24)
peritubular myoid cell (7)

ciliated cell (253)

ciliated epithelial cell (205)

brush border epithelial cell (143)

enterocyte (121)

enterocyte of epithelium of large intestine (5)
enterocyte of epithelium of small intestine (36)

epithelial cell of proximal tubule (20)

kidney proximal convoluted tubule epithelial cell (1)
kidney proximal straight tubule epithelial cell (3)

ependymal cell (48)

choroid plexus epithelial cell (3)

multi-ciliated epithelial cell (10)

ciliated columnar cell of tracheobronchial tree (8)

ciliated cell of the bronchus (2)

ciliated olfactory receptor neuron (1)
lung ciliated cell (2)

circulating cell (6)

coelomocyte (6)

contractile cell (844)

muscle cell (678)

non-striated muscle cell (250)

smooth muscle cell (250)

bronchial smooth muscle cell (2)
enteric smooth muscle cell (1)
smooth muscle cell of prostate (1)
uterine smooth muscle cell (1)
vascular associated smooth muscle cell (97)

aortic smooth muscle cell (3)
smooth muscle cell of the coronary artery (3)

striated muscle cell (87)

cardiac muscle cell (80)

fetal cardiomyocyte (5)
regular cardiac myocyte (6)

regular atrial cardiac myocyte (6)

specialized cardiac myocyte (4)

myocardial endocrine cell (4)

ventricular cardiac muscle cell (1)

myotube (6)

skeletal muscle fiber (4)

fast muscle cell (2)

type II muscle cell (1)

type IIa muscle cell (1)

red muscle cell (1)

type IIa muscle cell (1)

slow muscle cell (1)

visceral muscle cell (250)

smooth muscle cell (250)

bronchial smooth muscle cell (2)
enteric smooth muscle cell (1)
smooth muscle cell of prostate (1)
uterine smooth muscle cell (1)
vascular associated smooth muscle cell (97)

aortic smooth muscle cell (3)
smooth muscle cell of the coronary artery (3)

myoepithelial cell (15)

myoepithelial cell of lactiferous gland (2)

myoepithelial cell of mammary gland (2)

peritubular myoid cell (7)

myofibroblast cell (34)
pericyte cell (117)

central nervous system pericyte (45)

brain pericyte (44)

mesangial cell (6)
renal interstitial pericyte (2)

defensive cell (831)

M cell of gut (3)

microfold cell of epithelium of small intestine (2)

alarm substance cell (4)
follicular dendritic cell (3)
phagocyte (821)

classical monocyte (15)

CD14-positive, CD16-negative classical monocyte (2)

macrophage (783)

Hofbauer cell (2)
elicited macrophage (67)

alternatively activated macrophage (35)
inflammatory macrophage (31)

lung macrophage (90)

alveolar macrophage (5)

tissue-resident macrophage (247)

Kupffer cell (20)
alveolar macrophage (5)
bone marrow macrophage (11)
central nervous system macrophage (202)

microglial cell (187)

immature microglial cell (1)
mature microglial cell (7)

perivascular macrophage (10)

mesangial phagocyte (5)
secondary lymphoid organ macrophage (1)

splenic macrophage (1)

mature neutrophil (1)
phagocyte (sensu Nematoda and Protostomia) (10)

coelomocyte (6)
hemocyte (sensu Nematoda and Protostomia) (4)

podocyte (sensu Diptera) (1)

phagocyte (sensu Vertebrata) (10)

mononuclear phagocyte (10)

electrically active cell (7454)

electrically responsive cell (4096)

muscle cell (678)

non-striated muscle cell (250)

smooth muscle cell (250)

bronchial smooth muscle cell (2)
enteric smooth muscle cell (1)
smooth muscle cell of prostate (1)
uterine smooth muscle cell (1)
vascular associated smooth muscle cell (97)

aortic smooth muscle cell (3)
smooth muscle cell of the coronary artery (3)

striated muscle cell (87)

cardiac muscle cell (80)

fetal cardiomyocyte (5)
regular cardiac myocyte (6)

regular atrial cardiac myocyte (6)

specialized cardiac myocyte (4)

myocardial endocrine cell (4)

ventricular cardiac muscle cell (1)

myotube (6)

skeletal muscle fiber (4)

fast muscle cell (2)

type IIa muscle cell (1)

red muscle cell (1)

type IIa muscle cell (1)

slow muscle cell (1)

visceral muscle cell (250)

smooth muscle cell (250)

bronchial smooth muscle cell (2)
enteric smooth muscle cell (1)
smooth muscle cell of prostate (1)
uterine smooth muscle cell (1)
vascular associated smooth muscle cell (97)

aortic smooth muscle cell (3)
smooth muscle cell of the coronary artery (3)

neuroendocrine cell (30)

amine precursor uptake and decarboxylation cell (16)

chromaffin cell (16)

chromaffin cell of adrenal gland (1)

adrenal medulla chromaffin cell (1)

chromophil cell of anterior pituitary gland (5)

acidophil cell of pars distalis of adenohypophysis (2)

mammotroph (1)
somatotroph (1)

basophil cell of pars distalis of adenohypophysis (3)

corticotroph (1)
gonadtroph (1)
thyrotroph (1)

type EC enteroendocrine cell (6)

lung neuroendocrine cell (3)

neuron (3388)

GABAergic neuron (363)

GABAergic interneuron (26)

cerebral cortex GABAergic interneuron (6)

adrenergic neuron (1)
afferent neuron (178)

sensory neuron (176)

chemoreceptor cell (43)

olfactory receptor cell (28)

ciliated olfactory receptor neuron (1)
crypt olfactory receptor neuron (1)

mechanoreceptor cell (28)

sensory hair cell (13)

auditory hair cell (3)
cochlear inner hair cell (3)
outer hair cell (4)
neuromast hair cell (3)

touch receptor cell (3)

neuronal receptor cell (68)

auditory hair cell (10)

cochlear inner hair cell (3)
outer hair cell (4)

pain receptor cell (12)
photoreceptor cell (34)

eye photoreceptor cell (1)
retinal cone cell (11)
retinal rod cell (11)

stretch receptor cell (1)
thermoreceptor cell (9)

cold sensing thermoreceptor cell (1)

olfactory bulb interneuron (11)

mitral cell (6)
periglomerular cell (3)

primary sensory neuron (2)

Rohon-Beard neuron (2)

sensory neuron of dorsal root ganglion (2)

central nervous system neuron (399)

CNS neuron (sensu Nematoda and Protostomia) (6)

Kenyon cell (6)

CNS neuron (sensu Vertebrata) (255)

CNS interneuron (11)

olfactory bulb interneuron (11)

mitral cell (6)
periglomerular cell (3)

Cajal-Retzius cell (10)
Purkinje cell (19)
basket cell (1)
granule cell (33)

cerebellar granule cell (8)
cortical granule cell (5)

dentate gyrus of hippocampal formation granule cell (2)
hippocampal granule cell (3)

olfactory granule cell (7)

neuron of the forebrain (78)

neuron of cerebral cortex (59)

hippocampal pyramidal neuron (10)
dentate gyrus of hippocampal formation granule cell (2)
hippocampal granule cell (3)
hippocampal neuron (1)
hippocampal granule cell (3)
hippocampal pyramidal neuron (10)

olfactory bulb interneuron (11)

mitral cell (6)
periglomerular cell (3)

olfactory granule cell (7)

neuronal brush cell (3)
pyramidal neuron (41)
retinal ganglion cell (59)

cerebellar neuron (32)

Purkinje cell (19)
cerebellar granule cell (8)
cerebellum glutamatergic neuron (2)

cerebral cortex neuron (47)

neuron of cerebral cortex (47)

cortical granule cell (3)

hippocampal granule cell (3)

hippocampal neuron (14)

hippocampal granule cell (3)
hippocampal pyramidal neuron (10)

medium spiny neuron (50)
midbrain dopaminergic neuron (1)
olfactory bulb tufted cell (6)

cholinergic neuron (64)
dopaminergic neuron (34)

midbrain dopaminergic neuron (1)

efferent neuron (24)

Purkinje cell (19)
motor neuron (5)

excitatory neuron (105)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

glutamatergic neuron (395)

cerebellum glutamatergic neuron (2)
retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

glycinergic neuron (1)
histaminergic neuron (1)
inhibitory neuron (68)
interneuron (252)

CNS interneuron (11)

olfactory bulb interneuron (11)

mitral cell (6)
periglomerular cell (3)

amacrine cell (38)
bipolar neuron (45)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

inhibitory interneuron (47)

GABAergic interneuron (26)

cerebral cortex GABAergic interneuron (6)

retina horizontal cell (12)

neuron neural crest derived (10)

enteric neuron (10)

nitrergic neuron (3)
noradrenergic neuron (11)
peptidergic neuron (34)
peripheral nervous system neuron (12)

autonomic neuron (12)

enteric neuron (10)
sympathetic neuron (1)

peripheral neuron (1)
primary neuron (2)

primary sensory neuron (2)

Rohon-Beard neuron (2)

serotonergic neuron (6)
spiral ganglion neuron (30)
visual system neuron (39)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

electrically signaling cell (3358)

neuron (3358)

GABAergic neuron (363)

GABAergic interneuron (26)

cerebral cortex GABAergic interneuron (6)

adrenergic neuron (1)
afferent neuron (168)

sensory neuron (166)

chemoreceptor cell (43)

olfactory receptor cell (28)

ciliated olfactory receptor neuron (1)
crypt olfactory receptor neuron (1)

mechanoreceptor cell (18)

sensory hair cell (3)

neuromast hair cell (3)

touch receptor cell (3)

neuronal receptor cell (68)

auditory hair cell (10)

cochlear inner hair cell (3)
outer hair cell (4)

pain receptor cell (12)
photoreceptor cell (34)

eye photoreceptor cell (1)
retinal cone cell (11)
retinal rod cell (11)

stretch receptor cell (1)
thermoreceptor cell (9)

cold sensing thermoreceptor cell (1)

olfactory bulb interneuron (11)

mitral cell (6)
periglomerular cell (3)

primary sensory neuron (2)

Rohon-Beard neuron (2)

sensory neuron of dorsal root ganglion (2)

central nervous system neuron (379)

CNS neuron (sensu Nematoda and Protostomia) (6)

Kenyon cell (6)

CNS neuron (sensu Vertebrata) (241)

CNS interneuron (11)

olfactory bulb interneuron (11)

mitral cell (6)
periglomerular cell (3)

Cajal-Retzius cell (10)
Purkinje cell (19)
basket cell (1)
granule cell (31)

cerebellar granule cell (8)
cortical granule cell (3)

hippocampal granule cell (3)

olfactory granule cell (7)

neuron of the forebrain (66)

neuron of cerebral cortex (47)

hippocampal granule cell (3)
hippocampal neuron (1)
hippocampal granule cell (3)
hippocampal pyramidal neuron (10)

olfactory bulb interneuron (11)

mitral cell (6)
periglomerular cell (3)

olfactory granule cell (7)

neuronal brush cell (3)
pyramidal neuron (41)
retinal ganglion cell (59)

cerebellar neuron (32)

Purkinje cell (19)
cerebellar granule cell (8)
cerebellum glutamatergic neuron (2)

cerebral cortex neuron (41)

neuron of cerebral cortex (41)

hippocampal neuron (11)

hippocampal pyramidal neuron (10)

medium spiny neuron (50)
midbrain dopaminergic neuron (1)
olfactory bulb tufted cell (6)

cholinergic neuron (64)
dopaminergic neuron (34)

midbrain dopaminergic neuron (1)

efferent neuron (24)

Purkinje cell (19)
motor neuron (5)

excitatory neuron (105)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

glutamatergic neuron (395)

cerebellum glutamatergic neuron (2)
retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

glycinergic neuron (1)
histaminergic neuron (1)
inhibitory neuron (68)
interneuron (252)

CNS interneuron (11)

olfactory bulb interneuron (11)

mitral cell (6)
periglomerular cell (3)

amacrine cell (38)
bipolar neuron (45)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

inhibitory interneuron (47)

GABAergic interneuron (26)

cerebral cortex GABAergic interneuron (6)

retina horizontal cell (12)

neuron neural crest derived (10)

enteric neuron (10)

nitrergic neuron (3)
noradrenergic neuron (11)
peptidergic neuron (34)
peripheral nervous system neuron (12)

autonomic neuron (12)

enteric neuron (10)
sympathetic neuron (1)

peripheral neuron (1)
primary neuron (2)

primary sensory neuron (2)

Rohon-Beard neuron (2)

serotonergic neuron (6)
spiral ganglion neuron (30)
visual system neuron (39)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

bone cell (122)

bone marrow cell (83)

bone marrow hematopoietic cell (53)

bone marrow macrophage (11)
granulocyte monocyte progenitor cell (23)

Kit-positive granulocyte monocyte progenitor (3)

megakaryocyte (19)

stromal cell of bone marrow (1)

osteoclast (9)
supporting cell of cochlea (23)

Claudius cell (2)
border cell of cochlea (3)
interdental cell of cochlea (3)
organ of Corti supporting cell (14)

Hensen cell (3)
phalangeal cell (6)

Deiter's cell (3)
inner phalangeal cell (3)

pillar cell (5)

cardiocyte (197)

cardiac endothelial cell (45)

cardiac blood vessel endothelial cell (7)

endothelial cell of coronary artery (6)

endocardial cell (15)

cardiac glial cell (1)
cardiac muscle cell (80)

fetal cardiomyocyte (5)
regular cardiac myocyte (6)

regular atrial cardiac myocyte (6)

specialized cardiac myocyte (4)

myocardial endocrine cell (4)

ventricular cardiac muscle cell (1)

cardiac muscle myoblast (3)
epicardial adipocyte (7)
fibroblast of cardiac tissue (44)
smooth muscle cell of the coronary artery (3)

connective tissue cell (913)

adipose microvascular endothelial cell (1)
fat cell (40)

beige adipocyte (1)
brown fat cell (4)
epicardial adipocyte (7)
white fat cell (9)

fibroblast (320)

embryonic fibroblast (4)
fibroblast neural crest derived (1)
fibroblast of cardiac tissue (44)
fibroblast of connective tissue of prostate (1)
fibroblast of lung (47)
fibroblast of mammary gland (11)
hepatic stellate cell (7)
pancreatic stellate cell (5)
preadipocyte (7)
pulmonary interstitial fibroblast (8)
reticular cell (6)
skin fibroblast (13)

fibroblast of dermis (2)

mesenchymal stem cell (31)

hair follicle dermal papilla cell (1)

hair follicle dermal papilla cell of scalp (1)

mesenchymal stem cell of adipose (1)
metanephric mesenchyme stem cell (1)
nephrogenic mesenchyme stem cell (4)
placental amniotic mesenchymal stromal cell (2)

osteoblast (17)
pericyte cell (117)

central nervous system pericyte (45)

brain pericyte (44)

mesangial cell (6)
renal interstitial pericyte (2)

stromal cell (387)

decidual cell (5)
extracellular matrix secreting cell (97)

collagen secreting cell (33)

chondrocyte (33)

hypertrophic chondrocyte (2)

glycosaminoglycan secreting cell (33)

chondrocyte (33)

hypertrophic chondrocyte (2)

hepatic stellate cell (7)
leptomeningeal cell (24)

fibrocyte (7)

tendon cell (5)

stromal cell of bone marrow (1)
stromal cell of endometrium (2)
stromal cell of ovary (19)

luteal cell (7)

large luteal cell (1)
small luteal cell (1)

theca cell (5)

embryonic cell (149)

early embryonic cell (3)

blastoderm cell (2)

ectodermal cell (20)
embryonic stem cell (34)
endodermal cell (28)
mesodermal cell (47)

hemangioblast (3)
intermediate mesodermal cell (1)

neural crest cell (3)
neuroplacodal cell (2)

epithelial cell (4112)

arcade cell (6)
ciliated epithelial cell (205)

brush border epithelial cell (143)

enterocyte (121)

enterocyte of epithelium of large intestine (5)
enterocyte of epithelium of small intestine (36)

epithelial cell of proximal tubule (20)

kidney proximal convoluted tubule epithelial cell (1)
kidney proximal straight tubule epithelial cell (3)

ependymal cell (48)

choroid plexus epithelial cell (3)

multi-ciliated epithelial cell (10)

ciliated columnar cell of tracheobronchial tree (8)

ciliated cell of the bronchus (2)

columnar/cuboidal epithelial cell (328)

brush border epithelial cell (143)

enterocyte (121)

enterocyte of epithelium of large intestine (5)
enterocyte of epithelium of small intestine (36)

epithelial cell of proximal tubule (20)

kidney proximal convoluted tubule epithelial cell (1)
kidney proximal straight tubule epithelial cell (3)

endothelial cell of high endothelial venule (1)
interfollicle cell (1)
lens epithelial cell (1)
myoepithelial cell (15)

myoepithelial cell of lactiferous gland (2)

myoepithelial cell of mammary gland (2)

peritubular myoid cell (7)

neurecto-epithelial cell (106)

auditory epithelial support cell (24)

supporting cell of cochlea (23)

Claudius cell (2)
border cell of cochlea (3)
interdental cell of cochlea (3)
Hensen cell (3)
pillar cell (5)
Deiter's cell (3)
inner phalangeal cell (3)

ependymal cell (48)

choroid plexus epithelial cell (3)

epidermal cell (sensu arthropoda) (1)

tormogen cell (1)

epidermoblast (1)
interstitial cell of Cajal (2)
neuroendocrine cell (30)

amine precursor uptake and decarboxylation cell (16)

chromaffin cell (4)
type EC enteroendocrine cell (6)
adrenal medulla chromaffin cell (1)
mammotroph (1)
somatotroph (1)
corticotroph (1)
gonadtroph (1)
thyrotroph (1)

lung neuroendocrine cell (3)

renal intercalated cell (36)

kidney collecting duct intercalated cell (13)
renal alpha-intercalated cell (3)
renal beta-intercalated cell (3)

renal principal cell (21)

kidney collecting duct principal cell (10)

kidney cortex collecting duct principal cell (2)

sheath cell (3)
simple columnar epithelial cell (1)

conjunctival epithelial cell (21)
duct epithelial cell (126)

branched duct epithelial cell (67)

cholangiocyte (12)
luminal epithelial cell of mammary gland (27)
pancreatic ductal cell (28)

epididymis glandular cell (1)
non-branched duct epithelial cell (25)

kidney collecting duct epithelial cell (25)

kidney collecting duct intercalated cell (13)
kidney collecting duct principal cell (10)

kidney cortex collecting duct principal cell (2)

seminal vesicle glandular cell (1)
seminiferous tubule epithelial cell (31)

Sertoli cell (24)
peritubular myoid cell (7)

ecto-epithelial cell (289)

general ecto-epithelial cell (145)

endocrine-paracrine cell of prostate gland (4)
epidermal cell (135)

epidermal cell (sensu arthropoda) (1)

tormogen cell (1)

epithelial cell of sweat gland (2)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

keratinocyte (41)

basal cell of epidermis (3)
keratinized cell of hair follicle (2)
keratinocyte stem cell (3)
prickle cell (2)

epithelial cell of skin gland (2)

epithelial cell of sweat gland (2)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

mammary alveolar cell (4)

keratinizing barrier epithelial cell (42)

keratinized cell of the oral mucosa (2)
keratinized squamous cell of esophagus (1)
keratinocyte (39)

basal cell of epidermis (3)
keratinocyte stem cell (3)
prickle cell (2)

neurecto-epithelial cell (102)

auditory epithelial support cell (21)

supporting cell of cochlea (20)

Claudius cell (2)
border cell of cochlea (3)
interdental cell of cochlea (3)
pillar cell (5)
Deiter's cell (3)
inner phalangeal cell (3)

ependymal cell (48)

choroid plexus epithelial cell (3)

epidermal cell (sensu arthropoda) (1)

tormogen cell (1)

epidermoblast (1)
interstitial cell of Cajal (2)
neuroendocrine cell (29)

amine precursor uptake and decarboxylation cell (15)

chromaffin cell (4)
type EC enteroendocrine cell (6)
mammotroph (1)
somatotroph (1)
corticotroph (1)
gonadtroph (1)
thyrotroph (1)

lung neuroendocrine cell (3)

endo-epithelial cell (444)

brush cell (20)

brush cell of epithelium proper of large intestine (1)

endothelial cell of viscerocranial mucosa (3)

buccal mucosa cell (2)

keratinized cell of the oral mucosa (2)

epithelial cell of alimentary canal (302)

M cell of gut (3)

microfold cell of epithelium of small intestine (2)

epithelial cell of esophagus (3)

keratinized squamous cell of esophagus (1)

epithelial cell of stomach (29)

glandular cell of stomach (28)

mucous cell of stomach (1)
gastric goblet cell (2)
mucus neck cell of gastric gland (2)
surface mucosal cell of stomach (4)
type G enteroendocrine cell (2)
parietal cell (5)
peptic cell (5)
stomach enteroendocrine cell (1)
type A cell of stomach (2)
type D cell of stomach (2)

intestinal epithelial cell (253)

enterocyte (121)

enterocyte of epithelium of large intestine (5)
enterocyte of epithelium of small intestine (36)

epithelial cell of large intestine (20)

brush cell of epithelium proper of large intestine (1)
colon endothelial cell (2)
colon glandular cell (1)
appendix glandular cell (1)
appendix glandular cell (1)
enterocyte of epithelium of large intestine (5)
colon glandular cell (1)
large intestine goblet cell (5)
rectum glandular cell (1)
appendix glandular cell (1)

epithelial cell of small intestine (58)

enterocyte of epithelium of small intestine (36)
microfold cell of epithelium of small intestine (2)
small intestine glandular cell (1)
duodenum glandular cell (1)
paneth cell of epithelium of small intestine (3)
small intestine goblet cell (10)

intestinal crypt stem cell (2)
intestinal enteroendocrine cell (18)
paneth cell (27)

paneth cell of epithelium of small intestine (3)

keratinized cell of the oral mucosa (2)
oral mucosa squamous cell (1)
salivary gland glandular cell (5)

acinar cell of salivary gland (4)

type EC enteroendocrine cell (6)

epithelial cell of prostate (17)

basal cell of prostate epithelium (4)

prostate stem cell (1)

luminal cell of prostate epithelium (4)

epithelial cell of thymus (40)

cortical thymic epithelial cell (3)
medullary thymic epithelial cell (34)

epithelial cell of thyroid gland (3)

thyroid follicular cell (3)

epithelial cell of uterus (8)

columnar cell of endocervix (1)

respiratory epithelial cell (51)

epithelial cell of lower respiratory tract (34)

epithelial cell of tracheobronchial tree (34)

basal cell of epithelium of bronchus (2)
basal cell of epithelium of bronchus (2)
ciliated cell of the bronchus (2)
club cell (20)
ciliated columnar cell of tracheobronchial tree (6)
ciliated cell of the bronchus (2)

respiratory basal cell (13)

basal cell of epithelium of bronchus (2)

epithelial cell of cervix (3)

columnar cell of endocervix (1)
uterine cervix glandular cell (1)

epithelial cell of gall bladder (1)

gall bladder glandular cell (1)

epithelial cell of lung (129)

epithelial cell of alveolus of lung (70)

pneumocyte (70)

type I pneumocyte (29)
type II pneumocyte (30)

lung endothelial cell (46)

lung microvascular endothelial cell (1)

lung goblet cell (1)
lung neuroendocrine cell (3)

epithelial cell of pancreas (139)

epithelial cell of exocrine pancreas (51)

pancreas exocrine glandular cell (22)

pancreatic acinar cell (21)

pancreatic centro-acinar cell (1)
pancreatic ductal cell (28)

pancreatic A cell (24)
pancreatic D cell (12)
pancreatic PP cell (8)
type B pancreatic cell (29)

fenestrated cell (17)

glomerular endothelial cell (15)

glandular epithelial cell (379)

acinar cell (44)

acinar cell of salivary gland (4)
pancreatic acinar cell (21)

adrenal gland glandular cell (7)

cortical cell of adrenal gland (6)

type I cell of adrenal cortex (1)
type II cell of adrenal cortex (1)
type III cell of adrenal cortex (1)

chromaffin cell of adrenal gland (1)

adrenal medulla chromaffin cell (1)

chromophil cell of anterior pituitary gland (5)

acidophil cell of pars distalis of adenohypophysis (2)

mammotroph (1)
somatotroph (1)

basophil cell of pars distalis of adenohypophysis (3)

corticotroph (1)
gonadtroph (1)
thyrotroph (1)

eccrine cell (2)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

endocrine-paracrine cell of prostate gland (4)
enteroendocrine cell (134)

PP cell (9)

pancreatic PP cell (8)

intestinal enteroendocrine cell (18)
stomach enteroendocrine cell (1)
type A enteroendocrine cell (26)

pancreatic A cell (24)
type A cell of stomach (2)

type B pancreatic cell (29)
type D enteroendocrine cell (14)

pancreatic D cell (12)
type D cell of stomach (2)

type EC enteroendocrine cell (6)
type G enteroendocrine cell (2)
type S enteroendocrine cell (2)

epididymis glandular cell (1)
epithelial cell of thyroid gland (3)

thyroid follicular cell (3)

gall bladder glandular cell (1)
glandular cell of stomach (26)

mucous cell of stomach (9)

mucus neck cell of gastric gland (2)
surface mucosal cell of stomach (4)
type G enteroendocrine cell (2)

parietal cell (5)
peptic cell (5)
stomach enteroendocrine cell (1)
type A cell of stomach (2)
type D cell of stomach (2)

glandular cell of the large intestine (6)

large intestine goblet cell (5)
rectum glandular cell (1)

goblet cell (53)

gastric goblet cell (2)
large intestine goblet cell (5)
respiratory goblet cell (4)

lung goblet cell (1)

small intestine goblet cell (10)

mammary gland glandular cell (5)

mammary alveolar cell (4)

mucous neck cell (3)

mucus neck cell of gastric gland (2)

oviduct glandular cell (5)

glandular cell of endometrium (2)
uterine cervix glandular cell (1)

pancreas exocrine glandular cell (22)

pancreatic acinar cell (21)

paneth cell (27)

paneth cell of epithelium of small intestine (3)

parathyroid glandular cell (2)
salivary gland glandular cell (5)

acinar cell of salivary gland (4)

seminal vesicle glandular cell (1)
small intestine glandular cell (14)

paneth cell of epithelium of small intestine (3)
small intestine goblet cell (10)

sweat secreting cell (3)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

hepatocyte (58)
ionocyte (11)
kidney epithelial cell (334)

epithelial cell of nephron (212)

kidney collecting duct cell (38)

kidney collecting duct epithelial cell (25)

kidney collecting duct intercalated cell (13)
kidney collecting duct principal cell (8)
kidney cortex collecting duct principal cell (2)

kidney cortex collecting duct epithelial cell (2)

kidney cortex collecting duct principal cell (2)

kidney corpuscule cell (64)

glomerular cell (64)

glomerular endothelial cell (15)
glomerular visceral epithelial cell (32)
parietal epithelial cell (16)

kidney tubule cell (107)

kidney cortex tubule cell (52)

epithelial cell of distal tubule (7)
kidney distal convoluted tubule epithelial cell (5)
kidney loop of Henle ascending limb epithelial cell (3)
epithelial cell of proximal tubule (16)
kidney proximal convoluted tubule epithelial cell (1)
kidney proximal straight tubule epithelial cell (3)
kidney connecting tubule epithelial cell (1)

nephron tubule epithelial cell (52)

epithelial cell of distal tubule (7)
kidney loop of Henle ascending limb epithelial cell (3)
epithelial cell of proximal tubule (16)
kidney proximal convoluted tubule epithelial cell (1)
kidney proximal straight tubule epithelial cell (3)
kidney connecting tubule epithelial cell (1)
kidney loop of Henle epithelial cell (14)
kidney loop of Henle ascending limb epithelial cell (3)
kidney loop of Henle descending limb epithelial cell (1)
kidney proximal straight tubule epithelial cell (3)

renal cortical epithelial cell (62)

kidney blood vessel cell (1)

kidney capillary endothelial cell (1)

kidney corpuscule cell (16)

glomerular cell (16)

glomerular endothelial cell (15)

kidney cortex collecting duct epithelial cell (2)

kidney cortex collecting duct principal cell (2)

kidney cortex tubule cell (43)

epithelial cell of distal tubule (7)
epithelial cell of proximal tubule (19)

kidney proximal straight tubule epithelial cell (3)

kidney connecting tubule epithelial cell (1)

renal intercalated cell (36)

kidney collecting duct intercalated cell (13)
renal alpha-intercalated cell (3)
renal beta-intercalated cell (3)

renal principal cell (19)

kidney collecting duct principal cell (8)

mammary gland epithelial cell (34)

luminal epithelial cell of mammary gland (27)
mammary gland glandular cell (5)

mammary alveolar cell (4)

myoepithelial cell of lactiferous gland (2)

myoepithelial cell of mammary gland (2)

meso-epithelial cell (976)

cortical cell of adrenal gland (6)

type I cell of adrenal cortex (1)
type II cell of adrenal cortex (1)
type III cell of adrenal cortex (1)

endothelial cell (780)

cardiac endothelial cell (45)

cardiac blood vessel endothelial cell (7)

endothelial cell of coronary artery (6)

endocardial cell (15)

cerebral cortex endothelial cell (7)
colon endothelial cell (2)
endothelial cell of sinusoid (8)

endothelial cell of hepatic sinusoid (8)

endothelial cell of vascular tree (342)

blood vessel endothelial cell (206)

capillary endothelial cell (37)
cardiac blood vessel endothelial cell (1)
endothelial cell of coronary artery (6)
endothelial cell of artery (39)
aortic endothelial cell (6)
endothelial cell of coronary artery (6)
endothelial stalk cell (34)
endothelial tip cell (27)
kidney capillary endothelial cell (1)
microvascular endothelial cell (1)
adipose microvascular endothelial cell (1)
prostate gland microvascular endothelial cell (1)
retinal blood vessel endothelial cell (4)
vein endothelial cell (16)

endothelial cell of lymphatic vessel (36)
endothelial cell of venule (3)

endothelial cell of high endothelial venule (1)

lung endothelial cell (46)

lung microvascular endothelial cell (1)

glomerular endothelial cell (15)
gut endothelial cell (3)
splenic endothelial cell (1)

epithelial cell of distal tubule (7)
epithelial cell of proximal tubule (19)

kidney proximal straight tubule epithelial cell (3)

follicular cell of ovary (21)

cumulus cell (6)
granulosa cell (14)

mesothelial cell (68)

seminiferous tubule epithelial cell (31)

Sertoli cell (24)
peritubular myoid cell (7)

myoepithelial cell (15)

myoepithelial cell of lactiferous gland (2)

myoepithelial cell of mammary gland (2)

peritubular myoid cell (7)

non-branched duct epithelial cell (23)

kidney collecting duct epithelial cell (23)

kidney collecting duct intercalated cell (13)
kidney collecting duct principal cell (8)

renal intercalated cell (36)

kidney collecting duct intercalated cell (13)
renal alpha-intercalated cell (3)
renal beta-intercalated cell (3)

ovarian surface epithelial cell (20)

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innate lymphoid cell (233)

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macrophage (783)

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myeloid cell (1842)

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osteoclast (9)

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myofibroblast cell (34)
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CD4-positive, alpha-beta memory T cell (7)
activated CD4-positive, alpha-beta T cell (15)
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naive thymus-derived CD4-positive, alpha-beta T cell (25)
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central memory CD4-positive, alpha-beta T cell (11)
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CD8-positive, alpha-beta T cell (86)
CD8-positive, alpha-beta cytokine secreting effector T cell (2)
CD8-positive, alpha-beta cytotoxic T cell (5)
CD8-positive, alpha-beta memory T cell (11)
activated CD8-positive, alpha-beta T cell (11)
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naive thymus-derived CD4-positive, alpha-beta T cell (25)
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CD8-positive, alpha-beta cytotoxic T cell (5)
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activated CD8-positive, alpha-beta T cell, human (2)
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mature NK T cell (11)
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naive T cell (47)

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naive thymus-derived CD8-positive, alpha-beta T cell (11)

regulatory T cell (73)

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Kupffer cell (20)
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classical monocyte (15)

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intermediate monocyte (6)

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Kupffer cell (20)
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Kupffer cell (20)
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naive thymus-derived CD4-positive, alpha-beta T cell (25)
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naive T cell (47)

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regulatory T cell (73)

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intermediate monocyte (6)

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Kupffer cell (20)
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mature conventional dendritic cell (2)
monocyte (289)

CD14-positive monocyte (17)

CD14-low, CD16-positive monocyte (5)
CD14-positive, CD16-negative classical monocyte (2)
CD14-positive, CD16-positive monocyte (4)

classical monocyte (15)

CD14-positive, CD16-negative classical monocyte (2)

intermediate monocyte (6)

CD14-positive, CD16-low monocyte (1)

non-classical monocyte (14)

CD14-low, CD16-positive monocyte (5)

myeloid dendritic cell (11)

CD1c-positive myeloid dendritic cell (2)
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osteoclast (9)

professional antigen presenting cell (957)

dendritic cell (307)

conventional dendritic cell (69)

Langerhans cell (8)
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macrophage (595)

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Kupffer cell (20)
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perivascular macrophage (10)

mesangial phagocyte (5)

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CD8-positive, alpha-beta T cell (86)
activated CD8-positive, alpha-beta T cell (11)
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activated CD4-positive, alpha-beta T cell (15)
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CD8-positive, alpha-beta T cell (86)
activated CD8-positive, alpha-beta T cell (11)
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mature NK T cell (11)
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memory T cell (35)

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naive T cell (47)

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naive thymus-derived CD8-positive, alpha-beta T cell (11)

regulatory T cell (66)

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classical monocyte (15)

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intermediate monocyte (6)

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Fraction A pre-pro B cell (2)
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classical monocyte (15)

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intermediate monocyte (6)

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non-classical monocyte (14)

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secretory cell (2662)

acid secreting cell (764)

GABAergic neuron (363)

GABAergic interneuron (26)

cerebral cortex GABAergic interneuron (6)

glutamatergic neuron (395)

cerebellum glutamatergic neuron (2)
retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

glycinergic neuron (1)
parietal cell (5)

alarm substance cell (4)
biogenic amine secreting cell (107)

adrenal medulla chromaffin cell (1)
histamine secreting cell (77)

histaminergic neuron (1)
mast cell (76)

noradrenergic cell (11)

noradrenergic neuron (11)

serotonin secreting cell (18)

platelet (4)
serotonergic neuron (6)
type EC enteroendocrine cell (6)
type S enteroendocrine cell (2)

carbohydrate secreting cell (33)

glycosaminoglycan secreting cell (33)

chondrocyte (33)

hypertrophic chondrocyte (2)

cholinergic neuron (64)
dopaminergic neuron (34)

midbrain dopaminergic neuron (1)

endocrine cell (301)

adrenocorticotropic hormone secreting cell (1)

corticotroph (1)

enteroendocrine cell (134)

PP cell (9)

pancreatic PP cell (8)

intestinal enteroendocrine cell (18)
stomach enteroendocrine cell (1)
type A enteroendocrine cell (26)

pancreatic A cell (24)
type A cell of stomach (2)

type B pancreatic cell (29)
type D enteroendocrine cell (14)

pancreatic D cell (12)
type D cell of stomach (2)

type EC enteroendocrine cell (6)
type G enteroendocrine cell (2)
type S enteroendocrine cell (2)

luteinizing hormone secreting cell (1)

gonadtroph (1)

myocardial endocrine cell (4)
neuroendocrine cell (29)

amine precursor uptake and decarboxylation cell (15)

chromaffin cell (15)

chromophil cell of anterior pituitary gland (5)

acidophil cell of pars distalis of adenohypophysis (2)

mammotroph (1)
somatotroph (1)

basophil cell of pars distalis of adenohypophysis (3)

corticotroph (1)
gonadtroph (1)
thyrotroph (1)

type EC enteroendocrine cell (6)

lung neuroendocrine cell (3)

pancreatic endocrine cell (89)

pancreatic A cell (24)
pancreatic D cell (12)
pancreatic PP cell (8)
type B pancreatic cell (29)

steroid hormone secreting cell (35)

androgen secreting cell (6)

theca cell (5)
type III cell of adrenal cortex (1)

cortical cell of adrenal gland (6)

type I cell of adrenal cortex (1)
type II cell of adrenal cortex (1)
type III cell of adrenal cortex (1)

glucocorticoid secreting cell (1)

type II cell of adrenal cortex (1)

granulosa cell (14)
mineralocorticoid secreting cell (1)

type I cell of adrenal cortex (1)

progesterone secreting cell (7)

luteal cell (7)

large luteal cell (1)
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excitatory neuron (105)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

excretory cell (80)

renal filtration cell (32)

glomerular visceral epithelial cell (32)

exocrine cell (51)

clear cell of eccrine sweat gland (1)
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hepatic stellate cell (7)
mammary gland glandular cell (5)

mammary alveolar cell (4)

mucus neck cell of gastric gland (2)
pancreas exocrine glandular cell (22)

pancreatic acinar cell (21)

salivary gland glandular cell (5)

acinar cell of salivary gland (4)

extracellular matrix secreting cell (97)

collagen secreting cell (33)

chondrocyte (33)

hypertrophic chondrocyte (2)

glycosaminoglycan secreting cell (33)

chondrocyte (33)

hypertrophic chondrocyte (2)

hepatic stellate cell (7)
leptomeningeal cell (24)

glandular epithelial cell (379)

acinar cell (44)

acinar cell of salivary gland (4)
pancreatic acinar cell (21)

adrenal gland glandular cell (7)

cortical cell of adrenal gland (6)

type I cell of adrenal cortex (1)
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chromaffin cell of adrenal gland (1)

adrenal medulla chromaffin cell (1)

chromophil cell of anterior pituitary gland (5)

acidophil cell of pars distalis of adenohypophysis (2)

mammotroph (1)
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basophil cell of pars distalis of adenohypophysis (3)

corticotroph (1)
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eccrine cell (2)

clear cell of eccrine sweat gland (1)
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endocrine-paracrine cell of prostate gland (4)
enteroendocrine cell (134)

PP cell (9)

pancreatic PP cell (8)

intestinal enteroendocrine cell (18)
stomach enteroendocrine cell (1)
type A enteroendocrine cell (26)

pancreatic A cell (24)
type A cell of stomach (2)

type B pancreatic cell (29)
type D enteroendocrine cell (14)

pancreatic D cell (12)
type D cell of stomach (2)

type EC enteroendocrine cell (6)
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epididymis glandular cell (1)
epithelial cell of thyroid gland (3)

thyroid follicular cell (3)

gall bladder glandular cell (1)
glandular cell of stomach (26)

mucous cell of stomach (9)

mucus neck cell of gastric gland (2)
surface mucosal cell of stomach (4)
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parietal cell (5)
peptic cell (5)
stomach enteroendocrine cell (1)
type A cell of stomach (2)
type D cell of stomach (2)

glandular cell of the large intestine (6)

large intestine goblet cell (5)
rectum glandular cell (1)

goblet cell (53)

gastric goblet cell (2)
large intestine goblet cell (5)
respiratory goblet cell (4)

lung goblet cell (1)

small intestine goblet cell (10)

mammary gland glandular cell (5)

mammary alveolar cell (4)

mucous neck cell (3)

mucus neck cell of gastric gland (2)

oviduct glandular cell (5)

glandular cell of endometrium (2)
uterine cervix glandular cell (1)

pancreas exocrine glandular cell (22)

pancreatic acinar cell (21)

paneth cell (27)

paneth cell of epithelium of small intestine (3)

parathyroid glandular cell (2)
salivary gland glandular cell (5)

acinar cell of salivary gland (4)

seminal vesicle glandular cell (1)
small intestine glandular cell (14)

paneth cell of epithelium of small intestine (3)
small intestine goblet cell (10)

sweat secreting cell (3)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

hatching gland cell (3)
inhibitory neuron (68)
lung secretory cell (35)

lung goblet cell (1)
lung neuroendocrine cell (3)
type II pneumocyte (30)

milk secreting cell (4)

mammary alveolar cell (4)

neuromast mantle cell (2)
peptide hormone secreting cell (104)

PP cell (9)

pancreatic PP cell (8)

adrenocorticotropic hormone secreting cell (1)

corticotroph (1)

chromophil cell of anterior pituitary gland (5)

acidophil cell of pars distalis of adenohypophysis (2)

mammotroph (1)
somatotroph (1)

basophil cell of pars distalis of adenohypophysis (3)

corticotroph (1)
gonadtroph (1)
thyrotroph (1)

endorphin secreting cell (8)

enkephalin secreting cell (8)

type EC enteroendocrine cell (6)
type G enteroendocrine cell (2)

gastrin secreting cell (2)

type G enteroendocrine cell (2)

ghrelin secreting cell (4)

pancreatic epsilon cell (4)

glucagon secreting cell (26)

type A enteroendocrine cell (26)

pancreatic A cell (24)
type A cell of stomach (2)

insulin secreting cell (30)

type B pancreatic cell (29)

melanocyte stimulating hormone secreting cell (1)
prolactin secreting cell (1)

mammotroph (1)

somatostatin secreting cell (14)

type D enteroendocrine cell (14)

pancreatic D cell (12)
type D cell of stomach (2)

somatotropin secreting cell (1)

somatotroph (1)

type S enteroendocrine cell (2)

protein secreting cell (137)

acinar cell (44)

acinar cell of salivary gland (4)
pancreatic acinar cell (21)

androgen binding protein secreting cell (24)

Sertoli cell (24)

cumulus cell (6)
insulin secreting cell (30)

type B pancreatic cell (29)

lysozyme secreting cell (27)

paneth cell (27)

paneth cell of epithelium of small intestine (3)

peptic cell (5)
prolactin secreting cell (1)

mammotroph (1)

seromucus secreting cell (61)

mucus secreting cell (61)

goblet cell (53)

gastric goblet cell (2)
large intestine goblet cell (5)
respiratory goblet cell (4)

lung goblet cell (1)

small intestine goblet cell (10)

mucous neck cell (3)

mucus neck cell of gastric gland (2)

surface mucosal cell of stomach (4)

surfactant secreting cell (50)

club cell (20)
type II pneumocyte (30)

testosterone secreting cell (35)

Leydig cell (34)
large luteal cell (1)

arcade cell (6)
cardiocyte (191)

cardiac endothelial cell (39)

cardiac blood vessel endothelial cell (1)
endocardial cell (15)

cardiac glial cell (1)
cardiac muscle cell (80)

fetal cardiomyocyte (5)
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cardiac muscle myoblast (3)
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smooth muscle cell of the coronary artery (3)

cell of skeletal muscle (45)

adult skeletal muscle myoblast (1)
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skeletal muscle fiber (3)

fast muscle cell (1)
red muscle cell (1)

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slow muscle cell (1)

skeletal muscle satellite cell (17)

skeletal muscle satellite stem cell (1)

columnar/cuboidal epithelial cell (307)

brush border epithelial cell (139)

enterocyte (121)

enterocyte of epithelium of large intestine (5)
enterocyte of epithelium of small intestine (36)

epithelial cell of proximal tubule (16)

endothelial cell of high endothelial venule (1)
interfollicle cell (1)
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myoepithelial cell (15)

myoepithelial cell of lactiferous gland (2)

myoepithelial cell of mammary gland (2)

peritubular myoid cell (7)

neurecto-epithelial cell (91)

auditory epithelial support cell (10)

supporting cell of cochlea (9)

Claudius cell (2)
border cell of cochlea (3)
interdental cell of cochlea (3)

ependymal cell (48)

choroid plexus epithelial cell (3)

epidermal cell (sensu arthropoda) (1)

tormogen cell (1)

epidermoblast (1)
interstitial cell of Cajal (2)
neuroendocrine cell (29)

amine precursor uptake and decarboxylation cell (15)

chromaffin cell (15)

chromophil cell of anterior pituitary gland (5)

mammotroph (1)
somatotroph (1)
corticotroph (1)
gonadtroph (1)
thyrotroph (1)

type EC enteroendocrine cell (6)

lung neuroendocrine cell (3)

renal intercalated cell (36)

kidney collecting duct intercalated cell (13)
renal alpha-intercalated cell (3)
renal beta-intercalated cell (3)

renal principal cell (19)

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sheath cell (3)
simple columnar epithelial cell (1)

conjunctival epithelial cell (21)
connective tissue cell (913)

adipose microvascular endothelial cell (1)
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fibroblast (320)

embryonic fibroblast (4)
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fibroblast of connective tissue of prostate (1)
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hepatic stellate cell (7)
pancreatic stellate cell (5)
preadipocyte (7)
pulmonary interstitial fibroblast (8)
reticular cell (6)
skin fibroblast (13)

fibroblast of dermis (2)

mesenchymal stem cell (31)

hair follicle dermal papilla cell (1)

hair follicle dermal papilla cell of scalp (1)

mesenchymal stem cell of adipose (1)
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nephrogenic mesenchyme stem cell (4)
placental amniotic mesenchymal stromal cell (2)

osteoblast (17)
pericyte cell (117)

central nervous system pericyte (45)

brain pericyte (44)

mesangial cell (6)
renal interstitial pericyte (2)

stromal cell (387)

decidual cell (5)
extracellular matrix secreting cell (97)

collagen secreting cell (33)

chondrocyte (33)

hypertrophic chondrocyte (2)

glycosaminoglycan secreting cell (33)

chondrocyte (33)

hypertrophic chondrocyte (2)

hepatic stellate cell (7)
leptomeningeal cell (24)

fibrocyte (7)

tendon cell (5)

stromal cell of bone marrow (1)
stromal cell of endometrium (2)
stromal cell of ovary (19)

luteal cell (7)

large luteal cell (1)
small luteal cell (1)

theca cell (5)

duct epithelial cell (124)

branched duct epithelial cell (67)

cholangiocyte (12)
luminal epithelial cell of mammary gland (27)
pancreatic ductal cell (28)

epididymis glandular cell (1)
non-branched duct epithelial cell (23)

kidney collecting duct epithelial cell (23)

kidney collecting duct intercalated cell (13)
kidney collecting duct principal cell (8)

seminal vesicle glandular cell (1)
seminiferous tubule epithelial cell (31)

Sertoli cell (24)
peritubular myoid cell (7)

ecto-epithelial cell (275)

general ecto-epithelial cell (143)

endocrine-paracrine cell of prostate gland (4)
epidermal cell (133)

epidermal cell (sensu arthropoda) (1)

tormogen cell (1)

epithelial cell of sweat gland (2)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

keratinocyte (39)

basal cell of epidermis (3)
keratinocyte stem cell (3)
prickle cell (2)

epithelial cell of skin gland (2)

epithelial cell of sweat gland (2)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

mammary alveolar cell (4)

keratinizing barrier epithelial cell (42)

keratinized cell of the oral mucosa (2)
keratinized squamous cell of esophagus (1)
keratinocyte (39)

basal cell of epidermis (3)
keratinocyte stem cell (3)
prickle cell (2)

neurecto-epithelial cell (90)

auditory epithelial support cell (10)

supporting cell of cochlea (9)

Claudius cell (2)
border cell of cochlea (3)
interdental cell of cochlea (3)

ependymal cell (48)

choroid plexus epithelial cell (3)

epidermal cell (sensu arthropoda) (1)

tormogen cell (1)

epidermoblast (1)
interstitial cell of Cajal (2)
neuroendocrine cell (28)

amine precursor uptake and decarboxylation cell (14)

chromaffin cell (14)

chromophil cell of anterior pituitary gland (4)

mammotroph (1)
somatotroph (1)
gonadtroph (1)
thyrotroph (1)

type EC enteroendocrine cell (6)

lung neuroendocrine cell (3)

endo-epithelial cell (431)

brush cell (20)

brush cell of epithelium proper of large intestine (1)

endothelial cell of viscerocranial mucosa (3)

buccal mucosa cell (2)

keratinized cell of the oral mucosa (2)

epithelial cell of alimentary canal (295)

M cell of gut (3)

microfold cell of epithelium of small intestine (2)

epithelial cell of esophagus (3)

keratinized squamous cell of esophagus (1)

epithelial cell of stomach (27)

glandular cell of stomach (26)

mucous cell of stomach (9)

mucus neck cell of gastric gland (2)
surface mucosal cell of stomach (4)
type G enteroendocrine cell (2)

parietal cell (5)
peptic cell (5)
stomach enteroendocrine cell (1)
type A cell of stomach (2)
type D cell of stomach (2)

intestinal epithelial cell (248)

enterocyte (121)

enterocyte of epithelium of large intestine (5)
enterocyte of epithelium of small intestine (36)

epithelial cell of large intestine (16)

brush cell of epithelium proper of large intestine (1)
colon epithelial cell (3)

colon glandular cell (2)

appendix glandular cell (1)

epithelial cell of appendix (1)

appendix glandular cell (1)

enterocyte of epithelium of large intestine (5)
glandular cell of the large intestine (6)

large intestine goblet cell (5)
rectum glandular cell (1)

epithelial cell of small intestine (57)

enterocyte of epithelium of small intestine (36)
microfold cell of epithelium of small intestine (2)
small intestine glandular cell (14)

paneth cell of epithelium of small intestine (3)
small intestine goblet cell (10)

intestinal crypt stem cell (2)
intestinal enteroendocrine cell (18)
paneth cell (27)

paneth cell of epithelium of small intestine (3)

keratinized cell of the oral mucosa (2)
oral mucosa squamous cell (1)
salivary gland glandular cell (5)

acinar cell of salivary gland (4)

type EC enteroendocrine cell (6)

epithelial cell of prostate (17)

basal cell of prostate epithelium (4)

prostate stem cell (1)

luminal cell of prostate epithelium (4)

epithelial cell of thymus (40)

cortical thymic epithelial cell (3)
medullary thymic epithelial cell (34)

epithelial cell of thyroid gland (3)

thyroid follicular cell (3)

epithelial cell of uterus (8)

columnar cell of endocervix (1)

respiratory epithelial cell (45)

epithelial cell of lower respiratory tract (28)

epithelial cell of tracheobronchial tree (28)

bronchial epithelial cell (22)

ciliated cell of the bronchus (2)
club cell (20)

ciliated columnar cell of tracheobronchial tree (6)

respiratory basal cell (13)

basal cell of epithelium of bronchus (2)

epithelial cell of cervix (3)

columnar cell of endocervix (1)
uterine cervix glandular cell (1)

epithelial cell of gall bladder (1)

gall bladder glandular cell (1)

epithelial cell of pancreas (139)

epithelial cell of exocrine pancreas (51)

pancreas exocrine glandular cell (22)

pancreatic acinar cell (21)

pancreatic centro-acinar cell (1)
pancreatic ductal cell (28)

pancreatic A cell (24)
pancreatic D cell (12)
pancreatic PP cell (8)
type B pancreatic cell (29)

extraembryonic cell (73)

decidual cell (5)
trophectodermal cell (5)
trophoblast cell (63)

extravillous trophoblast (12)
mononuclear cytotrophoblast cell (15)
placental villous trophoblast (11)

syncytiotrophoblast cell (6)

spongiotrophoblast cell (4)
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fenestrated cell (17)

glomerular endothelial cell (15)

flatworm hypodermal cell (24)
glandular epithelial cell (376)

acinar cell (44)

acinar cell of salivary gland (4)
pancreatic acinar cell (21)

adrenal gland glandular cell (7)

cortical cell of adrenal gland (6)

type I cell of adrenal cortex (1)
type II cell of adrenal cortex (1)
type III cell of adrenal cortex (1)

chromaffin cell of adrenal gland (1)

adrenal medulla chromaffin cell (1)

chromophil cell of anterior pituitary gland (2)

acidophil cell of pars distalis of adenohypophysis (1)

somatotroph (1)

basophil cell of pars distalis of adenohypophysis (1)

thyrotroph (1)

eccrine cell (2)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

endocrine-paracrine cell of prostate gland (4)
enteroendocrine cell (134)

PP cell (9)

pancreatic PP cell (8)

intestinal enteroendocrine cell (18)
stomach enteroendocrine cell (1)
type A enteroendocrine cell (26)

pancreatic A cell (24)
type A cell of stomach (2)

type B pancreatic cell (29)
type D enteroendocrine cell (14)

pancreatic D cell (12)
type D cell of stomach (2)

type EC enteroendocrine cell (6)
type G enteroendocrine cell (2)
type S enteroendocrine cell (2)

epididymis glandular cell (1)
epithelial cell of thyroid gland (3)

thyroid follicular cell (3)

gall bladder glandular cell (1)
glandular cell of stomach (26)

mucous cell of stomach (9)

mucus neck cell of gastric gland (2)
surface mucosal cell of stomach (4)
type G enteroendocrine cell (2)

parietal cell (5)
peptic cell (5)
stomach enteroendocrine cell (1)
type A cell of stomach (2)
type D cell of stomach (2)

glandular cell of the large intestine (6)

large intestine goblet cell (5)
rectum glandular cell (1)

goblet cell (53)

gastric goblet cell (2)
large intestine goblet cell (5)
respiratory goblet cell (4)

lung goblet cell (1)

small intestine goblet cell (10)

mammary gland glandular cell (5)

mammary alveolar cell (4)

mucous neck cell (3)

mucus neck cell of gastric gland (2)

oviduct glandular cell (5)

glandular cell of endometrium (2)
uterine cervix glandular cell (1)

pancreas exocrine glandular cell (22)

pancreatic acinar cell (21)

paneth cell (27)

paneth cell of epithelium of small intestine (3)

parathyroid glandular cell (2)
salivary gland glandular cell (5)

acinar cell of salivary gland (4)

seminal vesicle glandular cell (1)
small intestine glandular cell (14)

paneth cell of epithelium of small intestine (3)
small intestine goblet cell (10)

sweat secreting cell (3)

clear cell of eccrine sweat gland (1)
dark cell of eccrine sweat gland (1)

hair follicle cell (19)
hematopoietic cell (6442)

blood cell (387)

erythrocyte (44)
granulocyte (322)

basophil (21)
eosinophil (14)
neutrophil (251)

mature neutrophil (1)

platelet (4)

bone marrow hematopoietic cell (53)

bone marrow macrophage (11)
granulocyte monocyte progenitor cell (23)

Kit-positive granulocyte monocyte progenitor (3)

megakaryocyte (19)

hematopoietic precursor cell (253)

hematopoietic lineage restricted progenitor cell (66)

CD115-positive monocyte OR common dendritic progenitor (2)
lymphoid lineage restricted progenitor cell (14)

pro-B cell (8)

Fraction A pre-pro B cell (2)
early pro-B cell (1)

pro-NK cell (1)
pro-T cell (2)

DN1 thymic pro-T cell (2)

myeloid lineage restricted progenitor cell (49)

erythroid progenitor cell (8)

erythroid progenitor cell, mammalian (2)

granulocytopoietic cell (18)

basophil mast progenitor cell (4)
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metamyelocyte (1)
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neutrophil progenitor cell (4)

mast cell progenitor (2)
megakaryocyte progenitor cell (14)
monopoietic cell (2)

promonocyte (2)

hematopoietic multipotent progenitor cell (27)

CD34-positive, CD38-negative multipotent progenitor cell (1)
Slamf1-negative multipotent progenitor cell (1)
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early lymphoid progenitor (7)

hematopoietic oligopotent progenitor cell (57)

common lymphoid progenitor (14)
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common myeloid progenitor, CD34-positive (1)

hematopoietic oligopotent progenitor cell, lineage-negative (23)

CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor (23)

granulocyte monocyte progenitor cell (23)

Kit-positive granulocyte monocyte progenitor (3)

megakaryocyte-erythroid progenitor cell (16)

hematopoietic stem cell (75)

Kit and Sca1-positive hematopoietic stem cell (2)

long term hematopoietic stem cell (1)
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leukocyte (4085)

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Langerhans cell (8)
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lymphocyte (1146)

T cell (737)

alpha-beta T cell (213)

CD4-positive, alpha-beta T cell (56)
CD8-positive, alpha-beta T cell (86)
mature NK T cell (11)
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activated CD4-positive, alpha-beta T cell (15)
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intraepithelial lymphocyte (1)
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memory T cell (17)
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CD8-positive, alpha-beta memory T cell (11)
naive T cell (7)
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naive thymus-derived CD4-positive, alpha-beta T cell (25)
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regulatory T cell (31)
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innate lymphoid cell (200)

group 1 innate lymphoid cell (164)

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lymphocyte of B lineage (183)

B cell (179)
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plasmablast (4)

monocyte (289)

CD14-positive monocyte (17)

CD14-low, CD16-positive monocyte (5)
CD14-positive, CD16-negative classical monocyte (2)
CD14-positive, CD16-positive monocyte (4)

classical monocyte (15)

CD14-positive, CD16-negative classical monocyte (2)

intermediate monocyte (6)

CD14-positive, CD16-low monocyte (1)

non-classical monocyte (14)

CD14-low, CD16-positive monocyte (5)

myeloid leukocyte (1314)

Langerhans cell (8)
granulocyte (322)

basophil (21)
eosinophil (14)
neutrophil (251)

mature neutrophil (1)

immature conventional dendritic cell (1)
macrophage (595)

Hofbauer cell (2)
elicited macrophage (67)

alternatively activated macrophage (35)
inflammatory macrophage (31)

lung macrophage (90)

alveolar macrophage (5)

tissue-resident macrophage (59)

Kupffer cell (20)
alveolar macrophage (5)
bone marrow macrophage (11)
central nervous system macrophage (15)

perivascular macrophage (10)

mesangial phagocyte (5)

mast cell (76)
mature conventional dendritic cell (2)
monocyte (289)

CD14-positive monocyte (17)

CD14-low, CD16-positive monocyte (5)
CD14-positive, CD16-negative classical monocyte (2)
CD14-positive, CD16-positive monocyte (4)

classical monocyte (15)

CD14-positive, CD16-negative classical monocyte (2)

intermediate monocyte (6)

CD14-positive, CD16-low monocyte (1)

non-classical monocyte (14)

CD14-low, CD16-positive monocyte (5)

myeloid dendritic cell (11)

CD1c-positive myeloid dendritic cell (2)
myeloid dendritic cell, human (2)

osteoclast (9)

professional antigen presenting cell (957)

dendritic cell (307)

conventional dendritic cell (69)

Langerhans cell (8)
immature conventional dendritic cell (1)
mature conventional dendritic cell (2)
myeloid dendritic cell (11)

CD1c-positive myeloid dendritic cell (2)
myeloid dendritic cell, human (2)

dendritic cell, human (18)

myeloid dendritic cell, human (2)
plasmacytoid dendritic cell, human (2)

liver dendritic cell (1)
plasmacytoid dendritic cell (35)

CD141-positive myeloid dendritic cell (1)
plasmacytoid dendritic cell, human (2)

macrophage (595)

Hofbauer cell (2)
elicited macrophage (67)

alternatively activated macrophage (35)
inflammatory macrophage (31)

lung macrophage (90)

alveolar macrophage (5)

tissue-resident macrophage (59)

Kupffer cell (20)
alveolar macrophage (5)
bone marrow macrophage (11)
central nervous system macrophage (15)

perivascular macrophage (10)

mesangial phagocyte (5)

mature B cell (47)

B-2 B cell (4)

follicular B cell (4)

germinal center B cell (15)

Bm4 B cell (10)
tonsil germinal center B cell (1)

marginal zone B cell (2)
memory B cell (10)

class switched memory B cell (2)

naive B cell (9)
plasmablast (4)

splenocyte (3)

marginal zone B cell (2)
splenic macrophage (1)

myeloid cell (1654)

basophil mast progenitor cell (4)
basophil progenitor cell (3)
eosinophil progenitor cell (3)
erythroid lineage cell (207)

erythroblast (55)
erythrocyte (44)
erythroid progenitor cell (8)

erythroid progenitor cell, mammalian (2)

primitive erythroid lineage cell (71)

primitive erythroid progenitor (9)
primitive red blood cell (62)

proerythroblast (3)
reticulocyte (1)

granulocyte monocyte progenitor cell (23)

Kit-positive granulocyte monocyte progenitor (3)

mast cell progenitor (2)
megakaryocyte (19)
megakaryocyte progenitor cell (14)
megakaryocyte-erythroid progenitor cell (16)
metamyelocyte (1)
myelocyte (1)
myeloid leukocyte (1314)

Langerhans cell (8)
granulocyte (322)

basophil (21)
eosinophil (14)
neutrophil (251)

mature neutrophil (1)

immature conventional dendritic cell (1)
macrophage (595)

Hofbauer cell (2)
elicited macrophage (67)

alternatively activated macrophage (35)
inflammatory macrophage (31)

lung macrophage (90)

alveolar macrophage (5)

tissue-resident macrophage (59)

Kupffer cell (20)
alveolar macrophage (5)
bone marrow macrophage (11)
central nervous system macrophage (15)

perivascular macrophage (10)

mesangial phagocyte (5)

mast cell (76)
mature conventional dendritic cell (2)
monocyte (289)

CD14-positive monocyte (17)

CD14-low, CD16-positive monocyte (5)
CD14-positive, CD16-negative classical monocyte (2)
CD14-positive, CD16-positive monocyte (4)

classical monocyte (15)

CD14-positive, CD16-negative classical monocyte (2)

intermediate monocyte (6)

CD14-positive, CD16-low monocyte (1)

non-classical monocyte (14)

CD14-low, CD16-positive monocyte (5)

myeloid dendritic cell (11)

CD1c-positive myeloid dendritic cell (2)
myeloid dendritic cell, human (2)

osteoclast (9)

neutrophil progenitor cell (4)
nucleated thrombocyte (2)
platelet (4)
promonocyte (2)

hepatocyte (58)
inflammatory cell (4)
ionocyte (11)
kidney cell (344)

kidney cortical cell (61)

inner renal cortex cell (1)
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renal cortical epithelial cell (59)

kidney blood vessel cell (1)

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glomerular cell (16)

glomerular endothelial cell (15)

kidney cortex collecting duct epithelial cell (2)

kidney cortex collecting duct principal cell (2)

kidney cortex tubule cell (40)

epithelial cell of distal tubule (7)
epithelial cell of proximal tubule (16)
kidney connecting tubule epithelial cell (1)

kidney epithelial cell (259)

epithelial cell of nephron (140)

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kidney collecting duct epithelial cell (23)

kidney collecting duct intercalated cell (13)
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glomerular cell (16)

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epithelial cell of distal tubule (7)
epithelial cell of proximal tubule (16)
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nephron tubule epithelial cell (42)

epithelial cell of distal tubule (7)
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kidney loop of Henle epithelial cell (18)

kidney loop of Henle descending limb epithelial cell (1)
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renal cortical epithelial cell (59)

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kidney cortex tubule cell (40)

epithelial cell of distal tubule (7)
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renal intercalated cell (36)

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renal interstitial pericyte (2)

mammary gland epithelial cell (34)

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melanocyte (25)

melanocyte of skin (10)

mesenchymal cell (83)

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meso-epithelial cell (954)

cortical cell of adrenal gland (6)

type I cell of adrenal cortex (1)
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endothelial cell (761)

cardiac endothelial cell (39)

cardiac blood vessel endothelial cell (1)
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cerebral cortex endothelial cell (7)
colon endothelial cell (2)
endothelial cell of sinusoid (8)

endothelial cell of hepatic sinusoid (8)

endothelial cell of vascular tree (329)

blood vessel endothelial cell (193)

capillary endothelial cell (37)
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endothelial cell of artery (45)

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prostate gland microvascular endothelial cell (1)

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endothelial cell of lymphatic vessel (36)
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lung endothelial cell (46)

lung microvascular endothelial cell (1)

glomerular endothelial cell (15)
gut endothelial cell (3)
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epithelial cell of distal tubule (7)
epithelial cell of proximal tubule (16)
follicular cell of ovary (21)

cumulus cell (6)
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mesothelial cell (68)

seminiferous tubule epithelial cell (31)

Sertoli cell (24)
peritubular myoid cell (7)

myoepithelial cell (15)

myoepithelial cell of lactiferous gland (2)

myoepithelial cell of mammary gland (2)

peritubular myoid cell (7)

non-branched duct epithelial cell (23)

kidney collecting duct epithelial cell (23)

kidney collecting duct intercalated cell (13)
kidney collecting duct principal cell (8)

renal intercalated cell (36)

kidney collecting duct intercalated cell (13)
renal alpha-intercalated cell (3)
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multi fate stem cell (168)

cardioblast (10)
hepatic stem cell (2)
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mesenchymal stem cell (31)

hair follicle dermal papilla cell (1)

hair follicle dermal papilla cell of scalp (1)

mesenchymal stem cell of adipose (1)
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placental amniotic mesenchymal stromal cell (2)

multi-potent skeletal muscle stem cell (9)
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progenitor cell of endocrine pancreas (32)
prostate stem cell (1)
retinal progenitor cell (9)

mural cell (118)

pericyte cell (117)

central nervous system pericyte (45)

brain pericyte (44)

mesangial cell (6)
renal interstitial pericyte (2)

muscle cell (677)

non-striated muscle cell (250)

smooth muscle cell (250)

bronchial smooth muscle cell (2)
enteric smooth muscle cell (1)
smooth muscle cell of prostate (1)
uterine smooth muscle cell (1)
vascular associated smooth muscle cell (97)

aortic smooth muscle cell (3)
smooth muscle cell of the coronary artery (3)

striated muscle cell (86)

cardiac muscle cell (80)

fetal cardiomyocyte (5)
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ventricular cardiac muscle cell (1)

myotube (5)

skeletal muscle fiber (3)

fast muscle cell (1)
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type IIa muscle cell (1)

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visceral muscle cell (250)

smooth muscle cell (250)

bronchial smooth muscle cell (2)
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smooth muscle cell of prostate (1)
uterine smooth muscle cell (1)
vascular associated smooth muscle cell (97)

aortic smooth muscle cell (3)
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muscle precursor cell (42)

adaxial cell (3)
myoblast (19)

cardiac myoblast (3)

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skeletal muscle myoblast (4)

adult skeletal muscle myoblast (1)

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skeletal muscle satellite cell (17)

skeletal muscle satellite stem cell (1)

myofibroblast cell (34)
neural cell (4449)

central nervous system macrophage (15)

perivascular macrophage (10)

central nervous system pericyte (45)

brain pericyte (44)

cerebral cortex endothelial cell (7)
choroid plexus epithelial cell (3)
chromophil cell of anterior pituitary gland (2)

acidophil cell of pars distalis of adenohypophysis (1)

somatotroph (1)

basophil cell of pars distalis of adenohypophysis (1)

thyrotroph (1)

leptomeningeal cell (24)
neuron (3298)

GABAergic neuron (363)

GABAergic interneuron (26)

cerebral cortex GABAergic interneuron (6)

adrenergic neuron (1)
afferent neuron (154)

sensory neuron (152)

chemoreceptor cell (42)

olfactory receptor cell (27)

crypt olfactory receptor neuron (1)

mechanoreceptor cell (18)

sensory hair cell (3)

neuromast hair cell (3)

touch receptor cell (3)

neuronal receptor cell (64)

auditory hair cell (7)

outer hair cell (4)

pain receptor cell (12)
photoreceptor cell (34)

eye photoreceptor cell (1)
retinal cone cell (11)
retinal rod cell (11)

stretch receptor cell (1)
thermoreceptor cell (8)

olfactory bulb interneuron (2)
primary sensory neuron (2)

Rohon-Beard neuron (2)

sensory neuron of dorsal root ganglion (2)

central nervous system neuron (342)

CNS neuron (sensu Nematoda and Protostomia) (6)

Kenyon cell (6)

CNS neuron (sensu Vertebrata) (214)

CNS interneuron (2)

olfactory bulb interneuron (2)

Cajal-Retzius cell (10)
Purkinje cell (19)
basket cell (1)
granule cell (28)

cerebellar granule cell (8)
olfactory granule cell (7)

neuron of the forebrain (51)

neuron of cerebral cortex (41)

hippocampal neuron (1)
hippocampal pyramidal neuron (10)

olfactory bulb interneuron (2)
olfactory granule cell (7)

neuronal brush cell (3)
pyramidal neuron (41)
retinal ganglion cell (59)

cerebellar neuron (32)

Purkinje cell (19)
cerebellar granule cell (8)
cerebellum glutamatergic neuron (2)

cerebral cortex neuron (31)

neuron of cerebral cortex (31)

hippocampal neuron (1)

medium spiny neuron (50)
midbrain dopaminergic neuron (1)
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cholinergic neuron (64)
dopaminergic neuron (34)

midbrain dopaminergic neuron (1)

efferent neuron (24)

Purkinje cell (19)
motor neuron (5)

excitatory neuron (105)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

glutamatergic neuron (395)

cerebellum glutamatergic neuron (2)
retinal bipolar neuron (39)

cone retinal bipolar cell (16)
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glycinergic neuron (1)
histaminergic neuron (1)
inhibitory neuron (68)
interneuron (243)

CNS interneuron (2)

olfactory bulb interneuron (2)

amacrine cell (38)
bipolar neuron (45)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
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inhibitory interneuron (47)

GABAergic interneuron (26)

cerebral cortex GABAergic interneuron (6)

retina horizontal cell (12)

neuron neural crest derived (10)

enteric neuron (10)

nitrergic neuron (3)
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peptidergic neuron (34)
peripheral nervous system neuron (12)

autonomic neuron (12)

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sympathetic neuron (1)

peripheral neuron (1)
primary neuron (2)

primary sensory neuron (2)

Rohon-Beard neuron (2)

serotonergic neuron (6)
spiral ganglion neuron (30)
visual system neuron (39)

retinal bipolar neuron (39)

cone retinal bipolar cell (16)
rod bipolar cell (3)

neuron associated cell (852)

glial cell (721)

cardiac glial cell (1)
cerebral cortex glial cell (5)

astrocyte of the cerebral cortex (4)

glial cell (sensu Nematoda and Protostomia) (65)

support cell (sensu Nematoda) (3)

sheath cell (sensu Nematoda) (3)

glial cell (sensu Vertebrata) (625)

Schwann cell (21)

myelinating Schwann cell (2)

macroglial cell (350)

astrocyte (167)

astrocyte of the cerebellum (3)
astrocyte of the forebrain (1)
astrocyte of the cerebral cortex (4)
astrocyte of the spinal cord (1)
tanycyte (12)
pituicyte (1)

brain macroglial cell (1)

astrocyte of the forebrain (1)

oligodendrocyte (180)

microglial cell (187)

immature microglial cell (1)
mature microglial cell (7)

perineuronal satellite cell (2)
radial glial cell (53)

Muller cell (10)

neuron associated cell (sensu Vertebrata) (131)

oligodendrocyte precursor cell (129)
perineuronal satellite cell (2)

retinal cell (167)

Muller cell (10)
camera-type eye photoreceptor cell (22)

retinal cone cell (11)
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retina horizontal cell (12)
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cone retinal bipolar cell (16)
rod bipolar cell (3)

retinal blood vessel endothelial cell (4)
retinal ganglion cell (59)
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peridermal cell (4)
salivary gland cell (1)
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auditory epithelial cell (17)

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supporting cell of cochlea (9)

Claudius cell (2)
border cell of cochlea (3)
interdental cell of cochlea (3)

auditory hair cell (7)

outer hair cell (4)

somatic stem cell (191)

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Kit and Sca1-positive hematopoietic stem cell (2)

long term hematopoietic stem cell (1)
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epithelial fate stem cell (84)

basal cell (69)

basal cell of epidermis (3)
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basal cell of epithelium of bronchus (2)

follicle stem cell (2)
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stem cell of epidermis (6)

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totipotent stem cell (13)

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stratified epithelial cell (42)

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keratinizing barrier epithelial cell (42)

keratinized cell of the oral mucosa (2)
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keratinocyte (39)

basal cell of epidermis (3)
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transitional epithelial cell (15)

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fat cell (40)

beige adipocyte (1)
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keratin accumulating cell (42)

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keratinized cell of the oral mucosa (2)
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keratinocyte (39)

basal cell of epidermis (3)
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metal ion accumulating cell (2)

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myelin accumulating cell (2)

myelinating Schwann cell (2)

phagocyte (633)

classical monocyte (15)

CD14-positive, CD16-negative classical monocyte (2)

macrophage (595)

Hofbauer cell (2)
elicited macrophage (67)

alternatively activated macrophage (35)
inflammatory macrophage (31)

lung macrophage (90)

alveolar macrophage (5)

tissue-resident macrophage (59)

Kupffer cell (20)
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bone marrow macrophage (11)
central nervous system macrophage (15)

perivascular macrophage (10)

mesangial phagocyte (5)

mature neutrophil (1)
phagocyte (sensu Nematoda and Protostomia) (10)

coelomocyte (6)
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podocyte (sensu Diptera) (1)

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mononuclear phagocyte (10)

pigment cell (51)

leucophore (4)
melanocyte (25)

melanocyte of skin (10)

visual pigment cell (12)

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xanthophore cell (2)

supportive cell (171)

Sertoli cell (24)
attachment cell (5)

tendon cell (5)

auditory epithelial support cell (10)

supporting cell of cochlea (9)

Claudius cell (2)
border cell of cochlea (3)
interdental cell of cochlea (3)

neuromast support cell (9)
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central nervous system pericyte (45)

brain pericyte (44)

mesangial cell (6)
renal interstitial pericyte (2)

support cell (sensu Nematoda and Protostomia) (5)

cap cell (1)
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sheath cell (sensu Nematoda) (3)

thecogen cell (1)

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M cell of gut (3)

microfold cell of epithelium of small intestine (2)

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valve cell (10)

heart valve cell (10)

photosynthetic cell (1)
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plant structure (115)

cardinal part of multi-tissue plant structure (8)

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stele (8)

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multi-tissue plant structure (59)

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meristematic cell (2)

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cortex (7)

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phloem (5)
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