SpeciesMarker gene sets
Homo sapiens13586
Mus musculus7814
Danio rerio1253
Caenorhabditis elegans598
Drosophila melanogaster443
Rattus norvegicus175
Macaca fascicularis160
Arabidopsis thaliana58
Macaca mulatta45
Publication Marker gene sets Year Type Description
Goveia et al. CancerCell 25 2020 Single Cell Survey of endothelial cell phenotypes in human and murine lung cancer using scRNA-seq
Miller et al. DevCell 12 2020 Single Cell Cell signatures of human fetal lung epithelial cells
Lotto et al. Cell 63 2020 Single Cell Single-cell transcriptomics of embryonic endodermal and liver tissue
Marjanovic et al. CancerCell 12 2020 Single Cell scRNA-seq of lung adenocarcinoma evolution in mouse model
Tran et al. Neuron 45 2020 Single Cell An atlas of retinal ganglion cell types
Cillo et al. Immunity 10 2020 Single Cell Immune landscape of viral and carcinogen-driven head and neck cancer
DeSisto et al. DevCell 6 2020 Single Cell scRNA-seq of forebrain meningeal fibroblasts
Dong et al. CancerCell 28 2020 Single Cell Transcriptome generation of adrenal neuroblastoma and developmental origin of neuroblastoma from early human embryos and fetal adrenal glands
Shami et al. DevCell 22 2020 Single Cell scRNA-seq of human and macaque testes
Drokhlyansky et al. Cell 24 2020 Single Cell A map of the human and mouse adult enteric nervous system
Karthaus et al. Science 39 2020 Single Cell Characterization of cell populations from mouse prostate
Yan et al. ScientificRep 58 2020 Single Cell Single cell atlas of the human fovea and peripheral retina
Zhao et al. NatureComm 16 2020 Single Cell scRNA-seq of brain vascular cells from young adult and aged mice
Gojo et al. CancerCell 19 2020 Single Cell scRNA-seq profiling of fresh and frozen patient ependymoma tissue
Tucker et al. Circulation 17 2020 Single Cell Transcriptional and cellular diversity of the human heart
Wilk et al. NatureMed 30 2020 Single Cell scRNA-seq of PBMCs from patients with COVID-19 and healthy controls
Silvin et al. Cell 6 2020 Single Cell scRNA-seq of peripheral blood cells in SARS-CoV-negative and SARS-CoV-positive patients
Ziegler et al. Cell 97 2020 Single Cell scRNA-seq of human, non-human primate and mouse across health and disease to uncover putative targets of SARS-CoV2
Reyes et al. NatureMed 28 2020 Single Cell Immune cell states in the blood of septic patients
Krivanek et al. NatureComm 17 2020 Single Cell Dental cell type atlas in mouse
Chen et al. GenomeBiol 22 2020 Single Cell Single-cell transcriptome of non-small cell lung cancer
Kieffer et al. CancerDiscov 6 2020 Single Cell Single-cell analysis of cancer-associated fibroblasts in breast cancers
Cowan et al. Cell 158 2020 Single Cell Cell type of the human retina and its organoids
Chestnut et al. NatureComm 24 2020 Single Cell Single-cell transcriptomic analysis of wild-type and Etv2-deficient zebrafish embryos
Avrahami et al. MolMetab 7 2020 Single Cell Single-cell transcriptomics of human islet ontogeny
Domingo-Gonzalez et al. eLife 8 2020 Single Cell An atlas of the murince lung immune compartment during early postnatal development
He et al. Nature 36 2020 Single Cell Single cell analysis of forelimb histogenesis
Han et al. NatureComm 62 2020 Single Cell Single cell transcriptomics during foregut organogenesis
Wu et al. JHO 27 2020 Single Cell Analysis of cellular hierarchy of bone marrow samples in acute myeloid leukemia
Wang et al. CellRes 26 2020 Single Cell scRNA-seq of fetal livers over developmental time in human and mouse
Rinaldi et al. eLife 21 2020 Single Cell Single-cell atlas of the mouse epididymis and vas deferens
Augsornworawat et al. CellReports 6 2020 Single Cell scRNA-seq to study grafted and in-vitro-generated stem cell islets
Agarwal et al. NatureComm 34 2020 Single Cell A single-cell atlas of the human substantia nigra
Ge et al. Theranostics 14 2020 Single Cell Single-cell transcriptome of mouse dermal cells during hair follicle development
Martos et al. CellRepMed 32 2020 Single Cell Single- cell analyses of immune cells in peripheral blood in smokers and non-smokers
Holmes et al. CellReports 15 2020 Single Cell Transcriptional profile of frontal suture in mice
Leir et al. LifeSciAlliance 1 2020 Single Cell An atlas of human proximal epididymis
Gillen et al. CellReports 15 2020 Single Cell scRNA-seq of childhood ependymoma
Lin et al. GenomeMed 9 2020 Single Cell Single-cell transcriptome analysis of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions
Zappia et al. EMBOReports 26 2020 Single Cell A single-cell atlas of the proximal wing imaginal disc in Drosophila
Baranek et al. CellReports 9 2020 Single Cell Transcriptomic profile of iNKT thymocytes in mouse
Lau et al. DevelopmentalCell 11 2020 Single Cell scRNA-seq of the cynomolgus macaque testis
Brulois et al. NatureComm 8 2020 Single Cell Single-cell profiling of lymph node blood endothelial cells
Lau et al. PNAS 12 2020 Single Cell Single-nucleus transcriptome profiling of the prefrontal cortex in Alzheimer's disease
vanZyl et al. PNAS 59 2020 Single Cell Cell atlas of aqueous humor outflow pathways in eyes of mammals
Ho et al. ProteinCell 10 2020 Single Cell scRNA-seq of adult male and female mouse pituitaries
Yeo et al. eLife 15 2020 Single Cell scRNA-seq of multiple mouse models of breast cancer
Mizrak et al. CellRep 24 2020 Single Cell Study of adult mouse olfactory bulb neurogenesis from the ventricular-subventricular zone
Cho et al. NatureComm 24 2020 Single Cell Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila
Conway et al. JASN 12 2020 Single Cell Single-cell atlas of the kidney during injury and repair
Ma et al. CellResearch 69 2020 Single Cell Single-cell transcriptomic atlas of primate cardiopulmonary aging
Liu et al. NeurobiolDis 19 2020 Single Cell scRNA-seq analysis of the brainstem of wild-type and mutant SOD1 mice
Schlesinger et al. NatureComm 26 2020 Single Cell Single-cell transcriptomes of pancreatic pervasive lesions and cancer in mouse
Penkava et al. NatureComm 15 2020 Single Cell Study of the cellular landscape of psoriatic arthritis blood and synovial fluid
Wang et al. NatureComm 7 2020 Single Cell Single-cell transcriptomics of human epidermis
Qian et al. CellResearch 72 2020 Single Cell A pan-cancer blueprint of the tumor environment in lung, colorectal, ovary and breast cancers
Couturier et al. NatureComm 13 2020 Single Cell scRNA-seq of adult glioblastoma and normal fetal brain cells
Aragona et al. Nature 30 2020 Single Cell scRNA-seq during skin stretching in mouse
Farnsworth et al. DevBiology 220 2020 Single Cell A single-cell transcriptome atlas for zebrafish development
Tan et al. Development 14 2020 Single Cell scRNA-seq of testicular germ and somatic cell development in mouse
Alshetaiwi et al. ScienceImmuno 13 2020 Single Cell Study of myeloid-derived suppressor cells in breast cancer
Ren et al. Circulation 6 2020 Single Cell Study of progression of cardiac hypertrophy in mouse
Izar et al. NatureMed 18 2020 Single Cell scRNA-seq of ascites specimens from patients with high-grade serous ovarian cancer
Stewart et al. Science 80 2020 Single Cell Global immune landscape of the human kidney
Guo et al. CellStemCell 20 2020 Single Cell Transcriptional cell atlas of testis development during human puberty
Wang et al. JExpMed 28 2020 Single Cell Single-cell transcriptome analysis of human intestine
Chen et al. NatureBiotech 41 2020 Single Cell Single cell sequencing of the transcriptome and chromatin accessibility in the same cell
Liang et al. NatureComm 8 2020 Single Cell Transcriptome profiling of human retinal tissue
Hung et al. PNAS 22 2020 Single Cell A cell atlas of the adult Drosophila midgut
Ma et al. Cell 171 2020 Single Cell Single-cell transcriptomic atlas for aging and calorific restriction in rat
Kalucka et al. Cell 78 2020 Single Cell Single-cell transcriptome atlas of murine endothelial cells
Johnson et al. DevCell 62 2020 Single Cell Atlas of the cell types participating in mouse digit tip regeneration
Rohlenova et al. CellMetab 20 2020 Single Cell scRNA-seq of endothelial cells in choroidal neovascularization
Zhang et al. Cell 55 2020 Single Cell scRNA-seq analyses on immune and stromal populations from colorectal cancer patients
Chen et al. eNeuro 7 2020 Single Cell Single-cell molecular profiling of the mouse neurohypophysis
Wang et al. NatureCellBiol 15 2020 Single Cell Transcriptional profiling of single cells from normal, failed and partially recovered adult human hearts
Slaidina et al. GeneDev 13 2020 Single Cell scRNA-seq of developing Drosophila ovaries
Schafflick et al. NatureComm 17 2020 Single Cell Single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis
Rubenstein et al. ScientificRep 11 2020 Single Cell Single-cell transciptional profiles in human skeletal muscle
Kim et al. NatureComm 29 2020 Single Cell Single-cell analysis of gastrointestinal stromal cells in mouse
Horns et al. CellReports 1 2020 Single Cell Memory B cell activation in response to influenza vaccination
Durante et al. NatureComm 30 2020 Single Cell Study of tumor microenvironment in uveal melanoma at single-cell resolution
Orozco et al. CellReports 11 2020 Single Cell Single-cell characterization of uman retina and retinal pigment epithelium
Zhang et al. NatureComm 25 2020 Single Cell Single-cell transcriptomic survey or aortas and coronary arteries in young and old non-primate humans
Wang et al. Cell 31 2020 Single Cell Single-cell transcriptomic landscape of ovaries from young and aged non-human primates
Sridhar et al. CellReports 23 2020 Single Cell Study of human retinal development using scRNA-seq and comparison with development of retinal organoids
He et al. JallergyClinImmunol 44 2020 Single Cell Atlas of cell populations in atopic dermatitis and healthy skin cells
Wallace et al. eLife 22 2020 Single Cell Characterization of the cells of the mouse habenula
Wen et al. NatureNeuroscience 21 2020 Single Cell Single-cell analysis of the basic cell types in the mouse suprachiasmatic nucleus
Vijay et al. NatureMetab 42 2020 Single Cell Human single-cell transcriptome atlas acess fat depots
vandenBrink et al. Nature 13 2020 Single Cell Study of mouse gastruloids using scRNA-seq
Hu et al. ScientificRep 7 2020 Single Cell Effect of delta-9-tetrahydrocannabinol on human peripheral blood cells
Anderson et al. CellReports 69 2020 Single Cell Examination of the contribution of Foxp1 to striatal development in mouse
Batiuk et al. NatureComm 6 2020 Single Cell Investigation of astrocyte molecular diversityy across mouse forebrain regions using scRNA-seq
Haensel et al. CellReports 29 2020 Single Cell Study of epidermal basal cell states during skin homeostasis and wound healing
Lehmann et al. JExpMed 13 2020 Single Cell Study of mouse retinal pigment epithelium/choroid cell types using scRNA-seq
Han et al. Nature 1710 2020 Single Cell Human cell landscape at single-cell levels
Barruet et al. eLife 17 2020 Single Cell scRNA-seq of human satellite cells from vasti lateralis muscle
Kazer et al. NatureMed 12 2020 Single Cell Single-cell analysis of immune dynamics during hyperacute HIV-1 infection
Fujimoto et al. PlosBiol 4 2020 Single Cell Transcriptome of lymphatic endothelial cells in murine skin-draining lymph nodes
Zakharov et al. JExpMed 24 2020 Single Cell Study of cellular complexity in murine islet cells at all stages of autoimmune diabetes
Smith et al. BloodAdv 20 2020 Single Cell scRNA-seq of NK cells in unstimulated and IL2-activated cells from healthy donors
Cano-Gamez et al. NatureComm 22 2020 Single Cell Single-cell transcriptomics of naive and memory CD4+ T cells in resting and stimulated state
Allen et al. eLife 120 2020 Single Cell Single cell atlas of adult Drosophila ventral nerve cord
Sole-Boldo et al. CommunBiol 17 2020 Single Cell scRNA-seq of sun-protected human skin
Jevitt et al. PlosBiol 32 2020 Single Cell Single-cell atlas of adult Drosophila ovary
Zhao et al. CellDiscov 34 2020 Single Cell Study of human liver resident immune cells using scRNA-seq
Qadir et al. PNAS 7 2020 Single Cell scRNA-seq of human pancreatic ductal cells
Kim et al. NatureComm 9 2020 Single Cell Study of lung adenocarcinoma using scRNA-seq
Psaila et al. MolCell 17 2020 Single Cell Single-cell transcriptome profiling of CD34+ lineage- hematopoietic stem and progenitor cells from healthy controls and patients with myelofibrosis
Liao et al. NatureMed 14 2020 Single Cell Atlas of bronchoalveolar immune cells from patients with varying severity of COVID-19
Kolla et al. NatureComm 59 2020 Single Cell Transcriptional profile of isolated mouse cochlear cells collected at four developmental time points
Khrameeva et al. GenomeRes 16 2020 Single Cell snRNAseq of 3 anatomical regions of human, chimpanzee, bonobo and macaque brains
Davidson et al. CellReports 13 2020 Single Cell scRNA-seq used to demonstrate the increasing heterogeneity within the stroma as a tumor develops
Zhao et al. Angiogenesis 5 2020 Single Cell scRNA-seq of liver endothelial cells in mouse
Karagiannis et al. NatureComm 61 2020 Single Cell Using scRNA-seq to characterize cell-type specific gene expression in the peripheral immune system of opioid-dependent individuals compared to non-dependent controls
Elyahu et al. ScienceAdv 14 2019 Single Cell scRNA-seq to characterize CD4+ T cells from you and aged mice
Baryawno et al. Cell 17 2019 Single Cell scRNA-seq census of bone marrow stroma in mouse
Brown et al. Cell 23 2019 Single Cell Transcriptional basis of mouse and human dendritic cell heterogeneity
Subramanian et al. NatureComm 57 2019 Single Cell Single cell census of human kidney organoids
Xu et al. Immunity 70 2019 Single Cell Mouse immune cell atlas of the small intestine under homeostatic and type 2 inflammatory conditions
Schirmer et al. Nature 22 2019 Single Cell snRNA-seq of multiple sclerosis lesions
Lake et al. NatureComm 30 2019 Single Cell Study of human kidneys using snRNA-seq
Der et al. NatureImmuno 6 2019 Single Cell scRNA-seq of renal biopsies and skin biopsis from lupus nephritis patients
Zhang et al. NatureImmuno 18 2019 Single Cell scRNA-seq of synovial tissue from patients with rheumatoid arthritis or osteoarthritis
TabulaMurisSenis et al. Nature 193 2019 Single Cell A single-cell transcriptomic atlas of ageing tissues in the mouse
Kalluri et al. Circulation 10 2019 Single Cell Single-cell analysis of the normal mouse aorta
Lukowski et al. EMBO 13 2019 Single Cell A single-cell transcriptome atlas of the adult human retina
Ramachandran et al. Nature 55 2019 Single Cell Transcriptional profiles of single cells from healthy and cirrhotic human liver
Tran et al. DevCell 20 2019 Single Cell Understanding human podocyte development using scRNA-seq
Popescu et al. Nature 27 2019 Single Cell Single-cell transcriptome profiling of human liver, skin, kidney and yolk sac cells
Martin et al. Cell 34 2019 Single Cell scRNA-seq of ileal Crohn's disease lesions
Peyser et al. AmJRespirCellMolBiol 17 2019 Single Cell scRNA-seq of a bleomycin-induced pulmonary fibrosis mouse model
Hulin et al. Development 18 2019 Single Cell An atlas of heart valve cell diversity
Neftel et al. Cell 8 2019 Single Cell scRNA-seq of gliobastoma tumors
Smillie et al. Cell 71 2019 Single Cell Atlas of single cells from the colon mucosa of ulcerative colitis patients and healthy individuals
Tibbit et al. Immunity 6 2019 Single Cell scRNA-seq of T helper cell response to house dust mites
Xiong et al. MolCell 10 2019 Single Cell scRNA-seq of non-parenchymal cells from healthy and nonalcoholic steatohepatitis mouse livers
Baron et al. Cell 7 2019 Single Cell scRNA-seq of whole kidney marrow in zebrafish
Szabo et al. NatureComm 21 2019 Single Cell Single-cell transcriptomics of resting and actived human T cells
Menon et al. NatureComm 21 2019 Single Cell Single-cell transcriptomic atlas of the human retina
Kanaya et al. CommunBiol 33 2019 Single Cell Effect of estrogen and polybrominated diphenyl ethers on mammary tissue during menopause in mouse
Voigt et al. PNAS 24 2019 Single Cell Single-cell transcriptomics of the human retinal pigment epithelium and choroid
Dobbie et al. CellReports 6 2019 Single Cell scRNA-seq to study the hepatic mesenchyme in healthy and fibrotic mouse liver
Zhao et al. Development 18 2019 Single Cell Single cell transcriptome of hemangiogenic differentiation in mouse
Pique-Regi et al. eLife 63 2019 Single Cell Single cell transcriptional signatures of the human placenta in term and preterm parturition
Jones et al. CellStemCell 8 2019 Single Cell Study of the diversity of cell types in the oral mucosal basal layer in mouse
Li et al. Cell 19 2019 Single Cell Transcriptional profiling of intratumoral immune infiltrates of 25 melanoma patients
Blecher-Gonen et al. CellSystems 16 2019 Single Cell Identification of cell types using scRNA-seq in pathogen-challenged mouse lymph nodes
Kalamakis et al. Cell 9 2019 Single Cell Single-cell transcriptomics of neural stem cell in young and aging murine brain
vanGalen et al. Cell 9 2019 Single Cell A combination of transcriptomics and mutational analyses in single cells from acute myeloid leukemia patients
Giordani et al. MolCell 10 2019 Single Cell Combined approach of scRNA-seq and mass cytometry to map cell types in adult mouse muscle
Jean-Baptiste et al. PlantCell 17 2019 Single Cell scRNA-seq of whole roots
Wang et al. CellStemCell 14 2019 Single Cell scRNA-seq of CD45+ dermal immune cells at P45 to identify the source of Oncostatin M as a distinct subset of TRM2+ macrophages
Zilionis et al. Immunity 127 2019 Single Cell scRNA-seq profiling of immune populations in non-small-cell lung cancer patients, and healthy and disease lungs of mouse models
Weng et al. CellStemCell 27 2019 Single Cell scRNA-seq on prospective astrocyte lineage cells and oligodendrocyte progenitor populations from neonatal mouse cortices
Mathys et al. Nature 12 2019 Single Cell Analyses of single-nucleus transcriptomes from the prefrontal cortex of 48 individuals with varying degrees of Alzheimer's disease
Velmeshev et al. Science 34 2019 Single Cell Single-nucleus RNAseq of cortical tissue from patients in autism
Cui et al. CellReports 9 2019 Single Cell Identification of cell types in the human fetal heart
Hill et al. Development 52 2019 Single Cell Study of murine heart development by single-cell RNA-seq of cardiac cells at E10.5 and E13.5 in control and Pitx2 null mouse embryos
Haremaki et al. NatureBiotech 9 2019 Single Cell Recapitulating early human neurulation in neuruloids grown from isogenic Huntington's disease human embryonic stem cells
Ruiz-Garcia et al. Development 18 2019 Single Cell Analysis of single-cell transcriptomes at successive stages during in vitro 3D differentiation of human airway epithelial cells
Xiao et al. GenesDev 32 2019 Single Cell Study of Hippo pathway deletion in adult resting cardiac fibroblasts
Aran et al. NatureImmuno 86 2019 Bulk Aggregated transcript signatures
Uhlen et al. Science 430 2019 Bulk Protein/transcript expression profiles
Jung et al. eLife 12 2019 Single Cell scRNAseq of wild-type and mutant mouse testes
Dulken et al. Nature 10 2019 Single Cell scRNAseq of young and old neurogenic niches in mice
Ayyaz et al. Nature 38 2019 Single Cell Single-cell transcriptomes of the mouse regenerating intestine
Mizrak et al. CellRep 21 2019 Single Cell Elucidation of molecular heterogeneity among adult mouse ventricular-subventricular neural stem cells and niche cells
Loo et al. NatureComm 44 2019 Single Cell Cellular composition of the developing mouse cerebral cortex at embryonic stage and birth
Xu et al. eLife 6 2019 Single Cell Gene expression programs driving mouse mandibular morphogenesis
Combes et al. GenomeMed 18 2019 Single Cell Study of human kidney organoids
Lawlor et al. eLife 16 2019 Single Cell Study of nephron progenitors in mebryonic mouse kidneys using scRNAseq
Lush et al. eLife 14 2019 Single Cell scRNAseq of lateral line organs in zebrafish to study hair cell regeneration
Peng et al. JMCB 8 2019 Single Cell scRNAseq of mouse developing cerebellum
Sohni et al. CellRep 15 2019 Single Cell Analysis of human adult and neonatal testes
Wizeman et al. eLife 20 2019 Single Cell scRNAseq of cerebellar cell types during early neurogenesis of the mouse developing cerebellum
Miragaia et al. Immunity 44 2019 Single Cell Single-cell transcriptomics of regulatory T cells in mouse skin and colon, with associated lymph nodes and spleen
Guerrero-Juarez et al. NatureComm 13 2019 Single Cell Study of wound fibroblast diversity in adult mouse
Pijuan-Sala et al. Nature 31 2019 Single Cell Single-cell atlas of mouse gastrulation and early organogenesis
Cao et al. Nature 38 2019 Single Cell Single-cell transcriptional landscape of mouse organogenesis
Hochane et al. PlosBiol 22 2019 Single Cell scRNAseq of human fetal kidney
Angelidis et al. NatureComm 31 2019 Single Cell Single-cell atlas of mouse aging lung
Guo et al. StemCellRep 23 2019 Single Cell scRNAseq of human embryonic stem cell derived embryoid body in the presence and absence of nicotine
Cheng et al. CellRep 3 2019 Single Cell Reconstruction of developmental trajectory of cells in pre-gastrula mouse embryos
Kumar et al. Development 7 2019 Single Cell Transcriptome analysis of kidney micro-organoids
Fang et al. CellRep 8 2019 Single Cell Analysis of transcriptomes of single islet cells from healthy and type-2 diabetes donors
Guo et al. Development 18 2019 Single Cell Transcriptome profiles of cells from mouse embryonic diencephalon
Mucenski et al. SciRep 27 2019 Single Cell scRNAseq of the mouse developing uterus
DellOrso et al. Development 20 2019 Single Cell scRNAseq of muscle stem cells and primary myoblasts from homeostatic or regenerating mouse hindlimb muscles
Ernst et al. NatureComm 37 2019 Single Cell Profiling spermatogenesis in adult mouse and during juvenile development
Ronning et al. ScientificRep 12 2019 Single Cell scRNAseq of healthy and degenerating mouse retinal immune cells
Grive et al. PlosGenetics 5 2019 Single Cell Profiling gene expression dynamics in male germ cell populations during testis development
Stevant et al. CellRep 4 2019 Single Cell Time series scRNAseq on ovarian somatic cells during sex determination in mouse
Farbehi et al. eLife 35 2019 Single Cell scRNAseq of non-cardiomyocyte fraction and enriched fibroblast lineage cells from mouse hearts at days 3 and 7 post-sham or myocardial infarction surgery
Nowotschin et al. Nature 17 2019 Single Cell Single-cell transcriptomes representing all mouse embryonic endoderm populations until midgestation
Tikhonova et al. Nature 31 2019 Single Cell Mapping the transcriptional landscape of bone marrow vascular, perivascular and osteoblast niche populations at homeostasis and under stress hematopoiesis
Zhang et al. MolPlant 24 2019 Single Cell Arabidopsis root cell atlas
Cosacak et al. CellRep 20 2019 Single Cell Study of neural stem cell heterogeneity and contextual plasticity in adult zebrafish brain
Xue et al. CellRep 9 2019 Single Cell scRNAseq of caudal hematopoietic tissue of zebrafish
Vladoiu et al. Nature 151 2019 Single Cell Study of developing murine cerebellum and childhood cerebellar tumors
Zhang et al. CellRep 17 2019 Single Cell Single-cell transcriptome atlas of gastric antral premalignant and early-malignant mucosae
Telley et al. Science 15 2019 Single Cell Temporal transcriptional profiles of apical progenitors and their daughter neurons in the mouse developing cortex
Voigt et al. ExpEyeRes 18 2019 Single Cell scRNAseq of foveal and peripheral expression in human retina
Shulse et al. CellRep 17 2019 Single Cell Single-cell transcriptome profiling of Arabidopsis roots
Kupari et al. CellRep 24 2019 Single Cell An atlas of vagal sensory neurons
Li et al. Development 26 2019 Single Cell Study of the mouse upper lip and primary palate fusion at single cell resolution
Lewis et al. PNAS 9 2019 Single Cell Analysis of zebrafish leucophores
Lukowski et al. CellRep 4 2019 Single Cell Single-cell transcriptional profiling of aortic endothelium in mouse
vanGurp et al. Development 10 2019 Single Cell Single-cell transcriptomics of the embryonic mouse pancreas
Ponce et al. Development 9 2019 Single Cell scRNA profiling of pancreatic endocrinogenesis in mouse
Pellin et al. NatureComm 7 2019 Single Cell Single cell transcriptional landscape of human hematopoietic progenitors
Lareau et al. NatureBiotech 27 2019 Single Cell Chromatin accessibility of single cells in mouse brain, and resting and stimulated human bone marrow derived cells
Ponzetta et al. Cell 12 2019 Single Cell scRNAseq of sorted mouse sarcoma-infiltrating unconventional alpha-beta T cells
Janiszewska et al. NatureCellBiol 12 2019 Single Cell scRNAseq of CD45+ cells from primary tumors, blood and lungs
Hu et al. PlosBiol 11 2019 Single Cell Transcriptome landscape of human fetal neural retina and retinal pigment epithelium
Peng et al. CellRes 10 2019 Single Cell Transcriptome profile of normal pancreatic and pancreatic ductal adenocarcinoma tumor tissues
Wolock et al. CellRep 7 2019 Single Cell Profiling mouse bone marrow stromal cells
Aizarani et al. Nature 39 2019 Single Cell Adult human liver cell atlas
Polioudakis et al. Neuron 16 2019 Single Cell Single cell expression dataset of the developing human neocortex
McCray et al. AJCEU 10 2019 Single Cell scRNAseq analysis of integrated humnn monolayer primary prostate epithelial cells and three-dimensional prostatic organoids from a single patient
Fan et al. NatureComm 19 2019 Single Cell scRNAseq of whole human adult ovaries
Bossel et al. NatureComm 19 2019 Single Cell scRNAseq of normal and ex-vivo Salmonella infected human peripheral blood cells
deSoysa et al. Nature 44 2019 Single Cell Interrogation of early cardiac progenitor cells using scRNAseq
Hovestadt et al. Nature 10 2019 Single Cell Analysis of intra- and intertumoral heterogeneity in 25 human medulloblastomas
Segal et al. NatureComm 5 2019 Single Cell Analysis of human detal and adult liver
Wirka et al. NatureMed 32 2019 Single Cell Transcriptomic phenotype of modulated vascular smooth muscle cells in vivo in atherosclerotic lesions in mouse and human arteries
Liu et al. CellRep 17 2019 Single Cell scRNAseq of mouse cardiac outflow tract cells from three developmental stages
Culemann et al. Nature 13 2019 Single Cell Transcriptional profiles of resident synovial machrophages in healthy and inflamed joints from mouse
Weinstock et al. Immunometab 15 2019 Single Cell scRNAseq of visceral adipose tissue leukocytes from lean, obese and caloric restriction post obesity mice
LoGiudice et al. Development 14 2019 Single Cell Single cell transcriptomic profile of early-born retinal neurons in mouse
Cheng et al. CellRep 26 2019 Single Cell Transcriptomic profile of hematopoietic stem and progenitor cells from control and m6A methyltransferase Mettl3 conditional knockout mice
Witt et al. eLife 9 2019 Single Cell scRNAseq of Drosophila testis
Min et al. PNAS 2 2019 Single Cell Identification of human adipocyte subtypes using scRNAseq
Huisman et al. NatureComm 12 2019 Single Cell Single cell transcriptome of the developing mouse arcuate nucleus neurons
Zhou et al. Nature 3 2019 Single Cell Transcriptome and DNA methylome of cultured human peri-implantation embryos
Hodge et al. Nature 75 2019 Single Cell Identification of cell types in the human cerebral cortex
Adriaenssens et al. CellMetabolism 6 2019 Single Cell scRNAseq of hypothalamic Gipr-expressing cells
Deng et al. Development 5 2019 Single Cell Single-cell transcriptomic dataset of wild-type Drosophila wing imaginal discs
Yu et al. JASN 31 2019 Single Cell Single-cell transcriptomic map of the human and mouse bladders
Yang et al. NatureComm 12 2019 Single Cell scRNAseq of natural killer cells from human bone marrow and blood
Sharir et al. NatureCellBiol 18 2019 Single Cell Identification of cell types in the mouse incisor epithelium in control and injury recovering cell populations
Packer et al. Science 525 2019 Single Cell Identification of terminal and pre-terminal cell types of C. elegans
Zheng et al. CellRes 8 2019 Single Cell Study of hematopoietic stem cell generation in human embryo
Wilson et al. PNAS 34 2019 Single Cell snRNAseq analysis of early human diabetic nephropathy
Bhattacherjee et al. NatureComm 30 2019 Single Cell Transcriptional profile of cells in mouse prefrontal cortex during adolescence and cocaine addiction
Ximerakis et al. NatureNeuroscience 90 2019 Single Cell Transcriptional profiles of young and old mouse brains
Wang et al. CancerDiscov 5 2019 Single Cell scRNAseq, snRNAseq and scATACseq of proliferating glioblastoma cells from 28 patients
Santos et al. NatureComm 10 2019 Single Cell scRNAseq of proliferating and differentiating mouse urothelial organoids
Jordao et al. Science 26 2019 Single Cell Single-cell profiling of homeostatic and disease associated microglia and macrophages from the central nervous system in mouse
Hammond et al. Immunity 22 2019 Single Cell Microglia in mice during development, old age and after injury
Biton et al. Cell 34 2018 Single Cell Using scRNA-seq to find Lgr5+ Intestinal stem cell subsets with enriched expression of MHCII molecules
Escobar et al. NatureComm 11 2018 Single Cell Dissecting the impact of leukemia and IFN gene therapy on the tumor micro environment
Pandey et al. CurrentBiol 33 2018 Single Cell scRNA-seq of neuronal types in zebrafish habenula
Amiri et al. Science 15 2018 Single Cell snRNAseq of iPSC-derived human telencephalic organoids and isogenic fetal cortex
Wang et al. CellStemCell 14 2018 Single Cell scRNAseq of human testicular cells from donors with normal spermatogenesis and nonobstructive azoospermia
Petitpre et al. NatureComm 8 2018 Single Cell Identification of spiral ganglion neuron types in mouse cochlea
Song et al. ScientificRep 7 2018 Single Cell Study of salivary gland development in mouse
Hu et al. GenesDev 37 2018 Single Cell snRNAseq analysis of postnatal mouse hearts
Byrnes et al. NatureComm 58 2018 Single Cell Murine pancreatic development at single-cell resolution
Wang et al. CellRep 13 2018 Single Cell Molecular profiles of human fetal kidney
Avey et al. CellRep 47 2018 Single Cell Study of cell-type-specific opioid responses by scRNAseq of control and morphine treated mouse nucleus accumbens
Owen et al. NatureComm 7 2018 Single Cell scRNAseq of Barrett's oesophagus and upper gastrointestinal tract
Cheung et al. Endocrinology 8 2018 Single Cell scRNAseq of mouse pituitary glands
MacParland et al. NatureComm 20 2018 Single Cell scRNAseq of human liver
Hermann et al. CellRep 129 2018 Single Cell Single-cell transcriptome of mouse and human spermatogenesis
Ariss et al. NatureComm 15 2018 Single Cell Catalog of Drosophila eye disc cells
Zywitza et al. CellRep 17 2018 Single Cell Cell types in the mouse subventricular zone
Tepe et al. CellRep 56 2018 Single Cell Study of olfactory bulb composition in adult mouse
Kretzschmar et al. PNAS 9 2018 Single Cell Mapping proliferating cells and their progeny in homeostatic and regenrating mouse hearts
Krentz et al. StemCellRep 37 2018 Single Cell Single cell transcriptomes of mouse embryonic pancreas and hESC-derived pancreatic progenitors
Ledergor et al. NatureMed 28 2018 Single Cell Study of plasma cell heterogeneity in symptomatic and asymptomatic myeloma
Li et al. Science 15 2018 Single Cell Integrative model of the human fetal and adult brain
Collin et al. StemCells 9 2018 Single Cell scRNAseq of human pluripotent stem-cell derived retinal organoids
Henry et al. CellRep 9 2018 Single Cell Single-cell atlas of the normal adult human prostate and prostatic urethra
Tabib et al. JID 19 2018 Single Cell scRNAseq of enzymatically digested skin from six healthy control skin samples
Hrvatin et al. NatureNeuroscience 31 2018 Single Cell Activity-dependent transcriptional states in mouse visual cortex
Zemmour et al. NatureImmunology 6 2018 Single Cell Landscape of regulatory T cell phenotypes
Vanlandewijck et al. Nature 15 2018 Single Cell Cell types and zonation in the mouse brain vasculature
Gao et al. NatureCellBiol 40 2018 Single Cell Single cell transcriptome of the human fetal digestive tract
Savas et al. NatureMed 10 2018 Single Cell Single-cell profiling of breast cancer T cells
Guo et al. NatureMed 22 2018 Single Cell Characterization of T-cells in non-small-cell lung cancer by scRNA-seq
Rheaume et al. NatureComm 40 2018 Single Cell Single cell transcriptome profiling of retinal ganglion cells from left and right eyes of mouse
Lindstrom et al. JASN 12 2018 Single Cell scRNAseq of predominantly mesenchymal cell types from the cortical nephrogenic niche of fetal human kidney at week 16
Cochain et al. CircRes 13 2018 Single Cell scRNAseq of leukocyte populations in healthy and atherosclerotic aortas of atherosclerosis-prone mice
Rodda et al. Immunity 9 2018 Single Cell scRNAseq of peripheral lymph node stromal cells from uninfected mice and mice infected with LCMV-Armstrong
Karaiskos et al. JASN 15 2018 Single Cell Transcriptional profiling of mouse glomerular cells
Zuo et al. AJRCCM 3 2018 Single Cell Single-cell transcriptome analysis of human small airway epithelial cells
Kernfeld et al. Immunity 23 2018 Single Cell Single-cell transcriptomic atlas of thymus organogenesis
Steuerman et al. CellSys 9 2018 Single Cell scRNA-seq of immune and non-immune cells from lungs treated with influenza virus
Burl et al. CellMetabolism 17 2018 Single Cell scRNA-seq of adipose tissue stromal and immune cells
Wu et al. JASN 16 2018 Single Cell Transcriptomic analysis of healthy adult kidney and kidney transplant biopsy
Lambrechts et al. NatureMed 52 2018 Single Cell Stromal cells in the human lung tumor microenvironment
Scavuzzo et al. NatureComm 51 2018 Single Cell Transcriptome profiling of pancreas from mouse embryos
Liu et al. CellResearch 14 2018 Single Cell scRNA-seq of placental cells from first and second trimester human placentas
Fan et al. CellResearch 35 2018 Single Cell Spatial transcriptomic survey of human embryonic cerebral cortex
Nguyen et al. NatureComm 6 2018 Single Cell Transciptome profile of primary human breast epithelial cells
Xie et al. CellReports 2 2018 Single Cell Study of mesenchymal cell subtypes in normal and fibrotic mouse lungs
Sathyamurthy et al. CellReports 50 2018 Single Cell Atlas of adult mouse spinal cord cell types
Wang et al. PNAS 2 2018 Single Cell scRNA-seq of pulmonary alveolar cells from postnatal mouse lungs
Stevant et al. CellReports 6 2018 Single Cell Study of cell lineage specification of gonadal somatic cells during male sex determination
Patil et al. ScienceImmuno 4 2018 Single Cell Single cell transcriptome analysis of circulating human CD4+ cytotoxic T lymphocytes
Skelly et al. CellReports 4 2018 Single Cell Transcriptional profiling of non-myocyte cells in the adult mouse heart
Basak et al. PNAS 9 2018 Single Cell Study of neural stem cells in the adult mouse subependymal zone niche
Saunders et al. Cell 565 2018 Single Cell Identification of cell types from the adult mouse brain
Green et al. DevCell 26 2018 Single Cell Identification of mouse testicular cell types
Shrestha et al. Cell 17 2018 Single Cell Sensory neuron diversity in the inner ear
Sun et al. Cell 5 2018 Single Cell Subtypes of spiral ganglion from mouse inner ear
Menon et al. Development 11 2018 Single Cell Cell type identification in human fetal kidney
Marques et al. DevCell 9 2018 Single Cell Study of transcriptional patterns of oligodendrocyte lineage progenitors during development
Klum et al. EMBOReports 6 2018 Single Cell Transcriptomes of the cell types in developing mouse spinal cord
Jia et al. NatureComm 8 2018 Single Cell Transcription profiles and chromatin accessibility profiles of cardiac progenitor cell transition states
Moffitt et al. Science 66 2018 Single Cell Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region
Vento-Tormo et al. Nature 32 2018 Single Cell Single-cell transcriptional profiling of the early maternal-fetal interface
Jerby-Arnon et al. Cell 1 2018 Single Cell Checkpoint blockade resistance program in melanoma patients
Sade-Feldman et al. Cell 19 2018 Single Cell Immune cell states in melanoma samples from responders and non-responders to checkpoint immunotherapy
Kinchen et al. Cell 38 2018 Single Cell Profiling of mesenchymas cells in human and mouse from normal and diseased colonic tissue
Hook et al. AJHG 13 2018 Single Cell Single-cell RNA-seq analysis of mouse dopaminergic neurons
Boulais et al. Immunity 9 2018 Single Cell Transcription profiles of triple negative CD45- Ter119- CD31- bone marrow cells
Tasic et al. Nature 101 2018 Single Cell Study of cell types from the mouse neocortex
Cao et al. Science 14 2018 Single Cell Chromatin accessibility and gene expression profiles in mouse kidney cells
Spanjaard et al. NatureBiotech 146 2018 Single Cell Study of lineage tracing using genetic scars in zebrafish larvae and adults
Schwalie et al. Nature 7 2018 Single Cell Study of adipogenic stem and precursor cells
Su et al. Nature 4 2018 Single Cell Study of early progenitor cells building coronary arteries
Bornstein et al. Nature 45 2018 Single Cell Study of the stromal compartment of the mouse thymus
Konstantinides et al. Cell 51 2018 Single Cell Study of fly optic lobe cells
Zeisel et al. Cell 265 2018 Single Cell Transcriptomes in the mouse nervous system
Ordovas-Montanes et al. Nature 14 2018 Single Cell Transcription patterns of human surgical chronic rhinosinusitis samples and healthy nasaal scrapings
Cohen et al. Cell 260 2018 Single Cell Single-cell transcription profiles and signaling interaction maps during mouse lung development
Azizi et al. Cell 95 2018 Single Cell Study of diverse immune phonetypes in breast tumor from 8 patients
Croset et al. eLife 28 2018 Single Cell Cellular diversity in the Drosophila midbrain
Montoro et al. Nature 7 2018 Single Cell Study of adult mouse tracheal epithelial single cells
Plasschaert et al. Nature 18 2018 Single Cell Single-cell atlas of mouse tracheal epithelial cells
Davie et al. Cell 87 2018 Single Cell Transcription patterns of the aging Drosophila brain
TabulaMuris et al. Nature 198 2018 Single Cell Transcription patterns of 20 mouse organs
Cusanovich et al. Cell 85 2018 Single Cell Chromatin accessibility in 13 mouse tissues
Lescroart et al. Science 5 2018 Single Cell Cardiovascular lineage segregation in E6.75 and E7.25 mouse embryos
Dahlin et al. Blood 25 2018 Single Cell Single cell landscape of hematopoietic stem and progenitor cells in WT and Kit mutant mice
Ibarra-Soria et al. NatureCellBiol 26 2018 Single Cell Transcriptomic characterization of E8.25 mouse embryos
Filbin et al. Science 11 2018 Single Cell Study of H3K27M gliomas from 6 patients
Hochgerner et al. NatNeuroscience 8 2018 Single Cell Study of the diversity of cell types in perinatal, juvenile and adult mouse dendate gyrus
Mi et al. Science 16 2018 Single Cell Cortical interneuron diversity in the mouse embryo ganglionic eminences
Alemany et al. Nature 16 2018 Single Cell Transcriptome of hematopoietic cells from kidney marrow, eyes, brain, caudal fin with clone tracing
Dong et al. GenomeBiol 4 2018 Single Cell Analysis of cells from eight organs and tissues of E9.5 to E11.5 mouse embryos
Stephenson et al. NatureComm 13 2018 Single Cell Transcriptional atlas of synovial tissue from rheumatoid arthritis patients
Mayer et al. Nature 3 2018 Single Cell Transcriptomes of mouse embryonic ganglion eminence cells
Zheng et al. MolSysBiol 10 2018 Single Cell Transcriptional compendium of progenitor states in human cord blood
Bergiers et al. eLife 8 2018 Single Cell Study of mouse embryonic hematopoiesis
Carmona et al. GenomeRes 3 2018 Single Cell Analysis of immune cells in zebrafish
Zhong et al. Nature 50 2018 Single Cell Survey of cells in the developing human prefrontal cortex at gestational week 8-26
Han et al. Cell 1061 2018 Single Cell Mouse Cell Altas
Lake et al. NatureBiotech 35 2018 Single Cell Transcriptional states in the human adult brain - visual cotex or visual area, frontal cortex and the lateral hemisphere from 6 individuals post-mortem
Wagner et al. Science 197 2018 Single Cell Gene expression landscape and lineage in zebrafish embryo
Farrell et al. Science 362 2018 Single Cell Developmental trajectories in wildtype zebrafish at 12 stages (from 3.3 hours to 12 hours post-fertilization) during embryogenesis; Profiling of mutant Mzeop zibrafish at 12 hrs post-fertilization
Raj et al. NatureBiotech 155 2018 Single Cell Simultaneous single-cell profiling of lineages and cell types in zebrafish brain
Rosenberg et al. Science 117 2018 Single Cell Profiling of postnatal day 2 and 11 developing mouse brain and spinal cord
Park et al. Science 24 2018 Single Cell Atlas of cell types in mouse kidney
Han et al. GenomeBiol 19 2018 Single Cell Cellular-state landscape of human pluripotent stem cell (hPSC) early differentiation
Shah et al. Cell 9 2018 Single Cell Transcriptomics and fate mapping of ependymal cells reveals an absence of neural stem cell function
Chung et al. NatureComm 6 2017 Single Cell Transcriptome analysis of breast cancer subtypes
Nowakowski et al. Science 47 2017 Single Cell scRNA-seq of human primary cortical and medial ganglionic eminence samples across peak neurogenesis
Qiu et al. CellMetabolism 6 2017 Single Cell Maturation signatures of mouse pancreatic islet alpha and beta cells
Wallrapp et al. Nature 6 2017 Single Cell Transcriptional profiles of ILC2 cells stimulated with alarmins IL25 and IL33
Artegiani et al. CellReports 9 2017 Single Cell Single-cell sequencing of the dentate gyrus to study adult mouse neurogenesis
Athanasiadis et al. NatureComm 5 2017 Single Cell Reconstruction of blood lineage tree in zebrafish
Bach et al. NatureComm 15 2017 Single Cell Single cell gene expression profiles of mammary epithelial cells in 4 stages of development
Medaglia et al. Science 28 2017 Single Cell Study of spatial distribution of immune cell types in tissue niches using photoactivatable reporters and scRNA-seq
Magella et al. DevBiology 16 2017 Single Cell scRNAseq of whole kidneys of E14.5 mice
Boufaied et al. ScientificRep 4 2017 Single Cell Single-cell trnascriptomics of female rat ventral mesenchymal pad and surrounding urethra
Pal et al. NatureComm 7 2017 Single Cell Analysis of mammary epithelial cells from pre-puberty to adult
Darmanis et al. CellReports 12 2017 Single Cell Analysis of sungle cells of glioblastoma and surrounding peripheral brain tissue from 4 patients
Savage et al. CellReports 5 2017 Single Cell Single cell RNA-seq of breast cancer cells from an exceptional responder to EGFR inhibitor, gefitinib
Honda et al. eLife 6 2017 Single Cell Elucidation of the development of the endolymphatic sac
Paul et al. Cell 7 2017 Single Cell Single cell transcriptome analysis of phenotype characterized GABAergic neurons
Tang et al. JExpMed 17 2017 Single Cell Hematopoietic and renal cell heterogeneity in adult zebrafish
Farmer et al. Development 15 2017 Single Cell Cell types in the developing lacrimal gland in mouse
Yang et al. Cell 27 2017 Single Cell Single-cell RNA-seq to study the heterogeneity within hair follicle progenitors and niches
Wallace et al. Neuron 2 2017 Single Cell Neuronal subtypes in the entopeduncular nucleus of the basal ganglia output region
Gierahn et al. NatureMeth 6 2017 Single Cell Profiling cell types in PBMCs to validate the Seq-Well method
Palicev et al. GenomeRes 8 2017 Single Cell Single cell transcriptomes of cells at the maternal-fetal interface at term
Frazer et al. NatureComm 6 2017 Single Cell Transcriptomics of the 5-HT3aR expressing cortical interneuron subtypes
Spaethling et al. CellReports 5 2017 Single Cell Single cell transcriptomics of cultured live neurosurgically resected adult brain cells
Dulken et al. CellReports 8 2017 Single Cell Transcriptomic analysis of adult neural stem cell lineage
Adam et al. Development 19 2017 Single Cell Molecular atlas of mouse kidney development
Chen et al. CellReports 34 2017 Single Cell Cell type classification in mouse adult hypothalamus
Campbell et al. NatureNeuroscience 89 2017 Single Cell Cell type identification in the arcuate hypothalamus and median eminence
Habib et al. NatureMethods 36 2017 Single Cell Single-nucleus RNA-seq of frozen mouse and human archived brain samples
Keren-Shaul et al. Cell 10 2017 Single Cell Immune cell types in Alzheimer's Disease
Lawlor et al. GenomeRes 7 2017 Single Cell Transcriptomes of human islet cells
Bifari et al. CellStemCell 6 2017 Single Cell Transcription patterns of meningeal cells in newborn mice
Artegiani et al. CellReports 9 2017 Single Cell Single cell analysis of cells in the hippocampal niche of the dentate gyrus
Mathys et al. CellReports 5 2017 Single Cell Single cell analysis of cell states of mouse microglia during neurodegenration
Wen et al. JBC 7 2017 Single Cell Study of post-implantation mouse embryos at E5.5 and E6.5
Chen et al. PNAS 3 2017 Single Cell Transcriptomes of major renal collecting duct cell types in mouse
Li et al. CellStemCell 15 2017 Single Cell Analysis of human fetal germ cells and their gonadal niche cells
Velten et al. NatureCellBiol 5 2017 Single Cell Human haematopoietic stem cell lineage commitment
Halpern et al. Nature 9 2017 Single Cell Spatial transcriptome of mammalian liver
Cao et al. Science 73 2017 Single Cell Single-cell trnscriptional profiling of C. elegans
Lonnberg et al. ScienceImmuno 2 2017 Single Cell Identification of genes associated with the Th1 and Tfh fates in differentiation of naive CD4+ T cells during blodd-stage Plasmodium infection in mice
Wu et al. JEM 3 2017 Single Cell Identification of highly variable genes in activated B-cells to study class switching to IgE
Stoeckius et al. NatureMeth 8 2017 Single Cell Method combining highly multiplexed protein marker detection with unbiased transcriptome profiling of cord blood mononuclear cells (CBMCs)
Yang et al. Nature 2 2017 Single Cell Establishment of mouse expanded potential stem cells
Gerber et al. Oncotarget 3 2017 Single Cell Heterogeneity in patient-derived melanoma cultures
Zheng et al. Cell 11 2017 Single Cell Subtypes in T cells in peripheral blood, liver tumor tissue and adjacent normal liver tissue from hepatocarcinoma patients
Karaiskos et al. Science 11 2017 Single Cell Single-cell spatial transcriptome of the Drosophila embryo
Venteicher et al. Science 5 2017 Single Cell Lineage and microenvironment in isocitrate dehydrogenase-mutant glioma cells
Villani et al. Science 10 2017 Single Cell Subtype identification of ~2400 human blood dendritic cells, monocytes and progenitor cells
Liu et al. Nature 7 2017 Single Cell Global transcriptome changes at early stages during reprogramming of mouse fibroblasts into induced cardiomyocytes (iCM)
Haber et al. Nature 64 2017 Single Cell Survey of small intestinal epithelial cells
Lavin et al. Cell 10 2017 Single Cell Simultaneous single-cell analysis of CD45+ immune non-lymphocyte cells in non small cell lung cancer (NSCLC) tumor and non-involved lung to identify myeloid and NK cell responses unique to tumor lesions
Zheng et al. NatComm 13 2017 Single Cell Identification of immune cell types from peripheral blood mononuclear cells (PMCs)
Olsson et al. Nature 9 2016 Single Cell Analysis of transitional intermediates spanning myelopoiesis
Zeng et al. NAR 6 2016 Single Cell Profiling differentiating human myoblasts
Habib et al. Science 35 2016 Single Cell Analysis of single nuclei from mouse hippocampal snatomical subregions
Moore et al. JExpMed 10 2016 Single Cell Single cell transcriptional analysis of hematopoiesis in zebrafish
Nelson et al. NatureComm 6 2016 Single Cell Cell type-specific transcriptional signatures at the maternal-foetal interface in mouse
Telley et al. Science 7 2016 Single Cell Temporal transcriptional profiles of neural progenitors and neurons in the mouse neurcortex
Engel et al. NatureImmunology 4 2016 Single Cell Transcription profiles of thymic invariant natural killer T cells
Segerstolpe et al. CellMetabolism 6 2016 Single Cell Transciptome profiling of human Pancreatic islets
Xin et al. CellMet 8 2016 Single Cell Single-cell analysis of human islet cells from non-diabetic and Type 2 diabetic donors
Muraro et al. CellSystems 9 2016 Single Cell Single-cell transcriptome atlas of the human pancreas
Hu et al. ScientificRep 6 2016 Single Cell Injury response in three types of dorsal root ganglion sensory neurons
Shekhar et al. Cell 26 2016 Single Cell Classification of mouse retinal bipolar neurons
DeLaughter et al. DevelopmentalCell 3 2016 Single Cell Study of gene expression during murine heart development from E9.5-P21 using 1133 single cells
Scialdone et al. Nature 10 2016 Single Cell Single-cell profiling of early mesoderm
Li et al. EMBORep 7 2016 Single Cell Study of human pancreatic islet cell types
Xin et al. PNAS 2 2016 Single Cell Study of mouse pancreatic islet cell types
Li et al. DevelopmentalCell 8 2016 Single Cell Transcriptomics profiling of mouse embryonic cardiac cells
Grun et al. CellStemCell 136 2016 Single Cell Mouse intestinal and bone marrow, and human adult pancreatic cell type identification
Grover et al. NatComm 2 2016 Single Cell Platelet bias of aged mouse hematopoietic stem cells using scRNA-seq of 52 cells from young mice (2-3 months) and 62 old mice (20-25 months)
Nestorowa et al. Blood 12 2016 Single Cell Map of mouse hematopoietic stem and progenitor cell differentiation
Macaulay et al. CellRep 6 2016 Single Cell Spectrum of differentiation in zebrafish hematopoietic cells from kidney marrow
Yu et al. Nature 12 2016 Single Cell Study of ILC precursor subsets in mouse bone marrow progenitors
Furlan et al. NatNeuroscience 8 2016 Single Cell Heterogeneity of mouse stellate and thoracic ganglia
Romanov et al. NatNeuroscience 105 2016 Single Cell Neuronal subtypes in the mouse hypothalamus
Joost et al. CellSys 31 2016 Single Cell Cell types in mouse telogen epidermis i.e. epidermis and hair follicles
Marques et al. Science 13 2016 Single Cell Heterogeneity in oligodendrocytes in mouse
Tasic et al. NatNeuroscience 49 2016 Single Cell Cell types in the mouse primary visual cortex
Gury-BenAri et al. Cell 15 2016 Single Cell Profiling intestinal innate lymphoid cells from normal mouse intenstine
Bjorklund et al. NatImmuno 4 2016 Single Cell Heterogeneity in human tonsil CD127+ innate lymphoid cells and natural killer cells
Gokce et al. CellRep 21 2016 Single Cell Cell types in mouse striatum
Tirosh et al. Science 9 2016 Single Cell Study of cell types in metastatic melanoma tumors from 19 patients
Treutlein et al. Nature 3 2016 Single Cell Conversion between somatic fates from mouse embryonic fibroblasts to neurons on Ascl1 overexpression - day 0 , 2, 5, 22
Tohonen et al. NatureComm 2 2015 Single Cell Single cell transcriptome during human preimplantation development
Burns et al. NatureComm 6 2015 Single Cell Single-cell RNA-seq of cells in sensory organs from the neonatal inner ear
Blakeley et al. Development 6 2015 Single Cell Human and mouse blastocyst analysis
Pollen et al. Cell 9 2015 Single Cell Celly types in the human cortex during development
Darmanis et al. PNAS 10 2015 Single Cell Cell diversity in human adult and fetal brain
Usoskin et al. NatNeuroscience 11 2015 Single Cell Classification of mouse sensory neuron types
Avraham et al. Cell 11 2015 Single Cell Heterogeneity in mouse bone marrow-derived macrophages exposed to Salmonella and LPS coated beads
Hanchate et al. Science 4 2015 Single Cell Study the progression of mouse epithelial neurons to olfactory sensory neurons to discover how Olfr gene is selected in each neuron
Tsang et al. GenomeBiol 3 2015 Single Cell Mouse hematopoietic stem cells with Bcl11a (83 normal +52 stringently sorted) and without Bcl11a (82 cells)
Kolodziejczyk et al. CellStemCell 8 2015 Single Cell Mouse ESCs cultered in serum (250 cells);2i (295 cells) and a2i (159 cells)
Grun et al. Nature 31 2015 Single Cell Study of mouse intestinal organoids of epithelial cells
Camp et al. PNAS 6 2015 Single Cell Comparison of the cell heterogeneity in human cerebral organoids and fetal neocortex. Analysis of fetal neocortex cells from 12-13 weeks post conception(wpc)
Lawson et al. Nature 3 2015 Single Cell Study of 441 human metastatic cells and 523 primary tumor cells
Klein et al. Cell 9 2015 Single Cell Heterogeneity in mouse embryonic stem cells
Gaublomme et al. Cell 7 2015 Single Cell Th17 cell pathogenicity progression from from self-renewing in lymph node to less functional in central nervous system in vivo (420 in vitro cells not included in data)
Macosko et al. Cell 39 2015 Single Cell Introduction of Drop-seq. Identification of cell types in mouse retinal cells
Paul et al. Cell 19 2015 Single Cell Heterogeneity in myeloid progenitors - hematopoiesis at single cell resolution
Ting et al. CellReports 1 2014 Single Cell Single-cell RNA sequencing of pancreatic circulating tumor cells
Ohnishi et al. NatureCellBiol 4 2014 Single Cell Epiblast and primitive endoderm lineage segregation within the inner cell mass of the mouse blastocyst at E3.5 and E4.5
Jaitin et al. Science 11 2014 Single Cell Introduction to MARS-Seq;identification of immune cell types of mouse splenic cells enriched for the CD11c surface marker
Pollen et al. NatBiotech 3 2014 Single Cell Testing of single-cell technology using 301 pluripotent;blood;skin and neural cells from human cells line and 65 cells from human developing cortex
Mahata et al. CellRep 2 2014 Single Cell Differentiation of naive T cells to Th2 cells
Treutlein et al. Nature 7 2014 Single Cell Mouse lung lineage markers
Moignard et al. NatureCellBiol 5 2013 Single Cell Study of blood stem and progenitor cells for 18 transcription factors
Shalek et al. Nature 2 2013 Single Cell Study of mouse BMDCs at 4hr after exposure to LPS
Yan et al. NatStrucMolBiol 11 2013 Single Cell Study of 90 human preimplantation embryos in various stages + 34 hESCs
Tang et al. CellStemCell 6 2010 Single Cell Study of transition from inner cell mass (ICM) to pluripotent embryonic stem cells (ESCs)
Guo et al. DevCell 3 2010 Single Cell Cell Fate decision prior to implantation
Subramanian et al. PNAS 7693 2005 Bulk Collection of annotated gene sets
DiseaseMarker gene sets
acquired metabolic disease 174
acute myeloid leukemia 20
adenocarcinoma 67
age related macular degeneration 14
allergic hypersensitivity disease 53
Alzheimer's disease 22
amyotrophic lateral sclerosis 19
anemia 11
aortic atherosclerosis 42
arteriosclerosis 42
arteriosclerotic cardiovascular disease 42
artery disease 127
arthritis 49
asthma 94
astrocytoma 33
atherosclerosis 42
atopic dermatitis 2
autism spectrum disorder 2
autoimmune disease of central nervous system 39
autoimmune disease of the nervous system 39
autoimmune hypersensitivity disease 39
autonomic nervous system neoplasm 9
autosomal dominant disease 14
autosomal genetic disease 14
bacterial infectious disease 70
bacterial sepsis 28
benign neoplasm 72
bone cancer 54
bone disease 161
bone inflammation disease 49
bone marrow cancer 44
bone marrow disease 44
brain cancer 189
brain disease 296
breast cancer 172
breast carcinoma 101
breast disease 172
bronchial disease 94
cancer 1554
cannabis abuse 7
carbohydrate metabolism disease 117
carcinoma 350
cardiomyopathy 27
cardiovascular cancer 20
cardiovascular system disease 194
cell type benign neoplasm 7
cell type cancer 523
central nervous system cancer 189
central nervous system disease 595
cerebellar disease 74
cerebellum cancer 74
cerebral ventricle cancer 34
cerebrum cancer 34
chronic granulomatous disease 4
colitis 82
colon cancer 20
colonic disease 20
colorectal cancer 55
common cold 14
connective tissue cancer 54
connective tissue disease 233
coronary artery disease 22
Coronavirus infectious disease 50
COVID-19 50
Crohn's disease 34
degeneration of macula and posterior pole 14
demyelinating disease 39
dengue disease 4
dermatitis 2
developmental disorder of mental health 2
diabetes mellitus 117
dilated cardiomyopathy 1
disease 5354
disease by infectious agent 195
disease of anatomical entity 3268
disease of cellular proliferation 1626
disease of mental health 41
disease of metabolism 176
drug dependence 9
encephalomyelitis 28
endocrine gland cancer 31
endocrine system disease 43
epilepsy 17
esophageal cancer 35
esophageal disease 35
eye degenerative disease 14
eye disease 88
fatty liver disease 2
female reproductive organ benign neoplasm 65
female reproductive organ cancer 13
female reproductive system disease 156
focal epithelial hyperplasia 17
food allergy 53
gastrointestinal allergy 53
gastrointestinal system cancer 112
gastrointestinal system disease 340
genetic disease 33
glioblastoma mesenchymal subtype 3
glioblastoma multiforme 30
glioblastoma neural subtype 3
glomerulonephritis 6
glucose metabolism disease 117
head and neck cancer 10
head and neck carcinoma 10
head and neck squamous cell carcinoma 10
heart cancer 20
heart disease 47
hematologic cancer 71
hematopoietic system disease 154
hepatobiliary disease 57
hepatobiliary system cancer 2
hepatocellular carcinoma 2
human immunodeficiency virus infectious disease 27
Huntington's disease 2
hypersensitivity reaction disease 92
hypertension 63
ileitis 34
immune system disease 96
inflammatory bowel disease 116
influenza 9
infratentorial cancer 84
inherited metabolic disorder 2
integumentary system disease 6
interstitial lung disease 18
intestinal cancer 55
intestinal disease 136
intrinsic cardiomyopathy 1
kidney cancer 44
kidney disease 39
kidney failure 22
large intestine cancer 55
leukemia 27
leukocyte disease 28
lipid storage disease 2
liver cancer 2
liver carcinoma 2
liver cirrhosis 55
liver disease 57
lower respiratory tract disease 363
lung adenocarcinoma 39
lung cancer 247
lung carcinoma 198
lung disease 269
lung non-small cell carcinoma 173
lupus nephritis 6
lymphocytic choriomeningitis 16
lysosomal storage disease 2
macular degeneration 14
malaria 2
malignant ependymoma 34
malignant glioma 54
medulloblastoma 10
melanoma 107
monogenic disease 33
morphine dependence 9
motor neuron disease 19
multiple myeloma 28
multiple sclerosis 39
musculoskeletal system cancer 54
musculoskeletal system disease 287
myelofibrosis 16
myeloid leukemia 26
myeloid neoplasm 44
myocardial infarction 21
nephritis 6
nervous system cancer 228
nervous system disease 911
neuroblastoma 9
neurodegenerative disease 82
non-alcoholic fatty liver disease 2
non-alcoholic steatohepatitis 2
nutrition disease 57
obesity 57
ocular cancer 30
oligodendroglioma 3
opiate dependence 9
opioid abuse 23
organ system benign neoplasm 65
organ system cancer 1002
osteoarthritis 18
ovarian cancer 13
ovarian disease 13
overnutrition 57
pancreas disease 43
pancreatic adenocarcinoma 28
pancreatic cancer 29
pancreatic carcinoma 29
pancreatic ductal adenocarcinoma 28
pancreatitis 14
papilloma 7
parasitic infectious disease 2
parasitic protozoa infectious disease 2
peripheral nervous system neoplasm 9
pervasive developmental disorder 2
phagocyte bactericidal dysfunction 4
primary bacterial infectious disease 42
primary immunodeficiency disease 4
proteinuria 11
psoriatic arthritis 15
pulmonary fibrosis 18
reproductive organ benign neoplasm 65
reproductive organ cancer 13
reproductive system disease 221
respiratory system cancer 247
respiratory system disease 633
retinal degeneration 14
retinal disease 14
rheumatoid arthritis 31
salmonellosis 27
sarcoma 12
sensory system cancer 30
sensory system disease 88
skin disease 6
spinal disease 54
squamous cell carcinoma 10
stomach cancer 20
subacute myeloid leukemia 6
substance abuse 30
substance dependence 9
substance-related disorder 39
supratentorial cancer 34
syndrome 15
tauopathy 22
thoracic cancer 172
thoracic disease 344
tuberculosis 15
type 1 diabetes mellitus 24
type 2 diabetes mellitus 53
ulcerative colitis 82
upper respiratory tract disease 14
uremia 22
urinary system cancer 44
urinary system disease 39
uterine benign neoplasm 65
uterine disease 65
uterine fibroid 65
uveal cancer 30
uveal disease 30
uveal melanoma 30
vascular disease 127
viral infectious disease 123
Organ-TissueMarker gene sets
2 cell stage 2
2-cell stage embryo 2
4 cell stage 2
4-8 cell stage embryo 1
8 cell stage 2
8-cell stage embryo 1
abdomen blood vessel 5
abdomen connective tissue 57
abdomen element 1653
abdominal lymph node 44
abdominal segment blood vessel 5
abdominal segment connective tissue 57
abdominal segment element 1665
abdominal viscera 239
adenohypophyseal placode 1
adipose tissue 223
adrenal gland 120
adrenal/interrenal gland 120
allantois 3
allocortex 5
alveolar system 14
Ammon's horn 106
amnion 1
amygdala 7
anatomical cavity 2
anatomical cluster 1261
anatomical collection 2
anatomical conduit 983
anatomical junction 6
anatomical line 2
anatomical projection 7
anatomical row 1
anatomical space 44
anatomical surface region 1
anatomical system 338
anlage 21
antenna 1
anterior cingulate cortex 6
anterior definitive endoderm 1
anterior nuclear group 3
anterior region of body 1
aorta 67
aorta endothelium 4
apical ectodermal ridge 1
appendage 90
arachnoid mater 5
archicortex 5
arcuate nucleus of hypothalamus 86
arcuate nucleus of medulla 2
arterial blood vessel 111
arterial system endothelium 4
artery 44
arthropod sensillum 1
articulation 5
ascending colon 11
ascending limb of loop of Henle 1
ascitic fluid 18
atrioventricular canal 2
atrioventricular region 5
atypical epithelium 8
autonomic ganglion 8
autopodial extension 62
axon tract 16
basal forebrain 19
basal ganglion 15
basal nucleus of telencephalon 69
bile duct 2
bladder organ 114
blastocyst 5
blood 657
blood island 10
blood vasculature 2
blood vessel 287
blood vessel endothelium 9
bodily fluid 742
body of caudate nucleus 3
body proper 146
body wall 3
bone element 98
bone marrow 542
bone of craniocervical region 3
bone of jaw 3
bony plate 5
brachial lymph node 44
brain 3136
brain blood vessel 1
brain commissure 8
brain gray matter 364
brain meninx 7
brain ventricle/choroid plexus 32
brainstem 1
brainstem nucleus 13
branchiomeric muscle 1
breast 240
breast epithelium 7
Brodmann area 49
bronchus 13
brown adipose tissue 18
buccal mucosa 8
CA1 field of hippocampus 9
CA2 field of hippocampus 1
CA3 field of hippocampus 7
calcareous tooth 35
canal of Schlemm 3
capillary 3
capillary layer of choroid 1
caput epididymis 2
cardiac atrium 12
cardiac chamber 50
cardiac muscle tissue 4
cardiac muscle tissue of myocardium 2
cardiac neural crest 1
cardiac septum 1
cardiac ventricle 14
cardiogenic mesoderm 5
cardiogenic splanchnic mesoderm 1
cardiovascular system endothelium 14
cartilage tissue 1
cauda epididymis 2
caudal fin 4
caudal ganglionic eminence 4
caudate nucleus 6
cavitated compound organ 961
cell cluster 166
cell cluster organ 64
cell layer 13
central gray substance 1
central gray substance of midbrain 1
central nervous system 329
central nervous system cell part cluster 906
central nervous system gray matter layer 118
central vein of liver 1
cerebellar layer 2
cerebellum 52
cerebral cortex 116
cerebral hemisphere gray matter 193
Cerebral organoid 6
cerebrospinal fluid 17
cervical ganglion 8
chorionic villus 19
choroid plexus 32
ciliated columnar epithelium 44
ciliated epithelium 44
circulatory organ 578
circulatory system dorsal vessel 1
circumventricular organ 83
claustrum of brain 1
cochlea 95
collecting duct of renal tubule 11
colon 225
colorectum 72
columnar epithelium 119
comma-shaped body 3
commissure of telencephalon 8
compound organ 1607
compound organ component 7
conducting system of heart 2
conducting tissue of heart 2
connective tissue 510
cornea 1
coronary artery 25
coronary vessel 27
corpus 3
corpus callosum 4
corpus luteum 3
cortex 17
cortex of hair 1
cortex of kidney 12
cortical collecting duct 1
cortical layer II 1
cranial ganglion 30
cranial muscle 1
cranial nerve 2
cranial neural crest 17
cranial neuron projection bundle 2
cranial placode 31
craniocervical muscle 1
craniocervical region vein 3
cuboidal epithelium 1
cutaneous appendage 7
cytotrophoblast 3
decidua 43
definitive endoderm 3
dense connective tissue 223
dense irregular connective tissue 223
dense mesenchyme tissue 27
dental epithelium 18
dentate gyrus of hippocampal formation 44
dentate nucleus 1
dentition 1
dermal bone 8
dermal papilla 4
dermal skeletal element 8
dermal skeleton 1
dermis 6
descending limb of loop of Henle 1
descending thin limb 5
developing anatomical structure 2054
diaphragm 5
diencephalic nucleus 170
diencephalon 6
diffuse reticular nucleus 11
digestive system duct 3
digestive system element 1311
digestive system gland 518
digestive tract 33
digestive tract diverticulum 36
digestive tract epithelium 103
digit 62
distal convoluted tubule 11
distal tubule 6
dorsal ectoderm derivative 1
dorsal epidermis primordium 1
dorsal horn of spinal cord 26
dorsal ocellus 1
dorsal plus ventral thalamus 54
dorsal region element 162
dorsal root ganglion 18
dorsal telencephalic commissure 4
dorsal thoracic disc 31
dorsolateral placode 5
duct 189
duct of male reproductive system 179
duodenum 24
dura mater 2
early embryo 3
early pharyngeal endoderm 4
early proximal tubule 1
ecto-epithelium 180
ectoderm 5
ectoderm-derived structure 6916
ectodermal placode 40
embryo 161
embryo stage 260
embryoid body 92
embryonic brain 2
embryonic structure 1777
embryonic tissue 425
embryonic/larval lymph gland 24
endo-epithelium 121
endocardium 5
endochondral bone 45
endochondral element 87
endocrine gland 907
endoderm 73
endoderm of foregut 5
endoderm of hindgut 1
endoderm of midgut 1
endoderm-derived structure 2262
endodermal part of digestive tract 36
endometrial stroma 1
endometrium 9
endothelium 24
endothelium of capillary 2
endothelium of peritubular capillary 2
enteric nervous system 7
entire embryonic mesenchyme 25
enveloping layer of ectoderm 2
epiblast (generic) 40
epibranchial ganglion 24
epibranchial placode 19
epicardium 6
epidermis gland 6
epidermis suprabasal layer 1
epididymis 26
epiphysis 2
epithalamus 1
epithelial bud 2
epithelial fold 2
epithelial furrow 1
epithelial layer of duct 5
epithelial sac 91
epithelial tube 219
epithelial vesicle 115
epithelium 1564
epithelium of crypt of Lieberkuhn 19
epithelium of crypt of Lieberkuhn of small intestine 19
epithelium of female urethra 1
epithelium of foregut-midgut junction 37
epithelium of hindgut 1
epithelium of lens 1
epithelium of midgut 1
epithelium of mucosa 101
epithelium of small intestine 38
epithelium of urethra 2
epithelium-associated lymphoid tissue 10
esophagus 54
excretory tube 137
exocrine gland 759
exocrine gland of integumental system 207
extensor digitorum longus 6
extensor muscle 6
external ectoderm 3
external female genitalia 1
external genitalia 1
external integument structure 33
external soft tissue zone 246
extraembryonic ectoderm 4
extraembryonic endoderm 5
extraembryonic membrane 8
extraembryonic mesoderm 2
extraembryonic structure 69
extraembryonic tissue 24
extraglomerular mesangium 1
eye 118
eye epithelium 13
eye gland 15
eye primordium 1
eye-antennal disc 15
face 26
facial bone 3
facial skeleton 6
fallopian tube 21
fastigial nucleus 1
fat pad 8
female reproductive gland 3
female reproductive organ 227
fenestrated capillary 3
fibrous joint 5
fin 17
floor plate 6
floor plate of neural tube 1
floor plate spinal cord region 1
food storage organ 168
forebrain 5
forebrain meninges 6
foregut 63
foregut epithelium 5
forelimb 36
foveola of retina 41
frontal cortex 81
frontal suture 5
functional part of brain 64
future central nervous system 7
gall bladder 32
ganglion 64
ganglion of peripheral nervous system 8
ganglionic eminence 6
gastric pit 2
gastrointestinal system epithelium 58
gastrula 3
geniculate placode 1
germ layer 290
germ layer / neural crest 321
germinal center 2
gill 18
gland 2257
gland of diencephalon 107
gland of digestive tract 14
gland of integumental system 213
gland of ocular region 15
glomerular endothelium 1
glomerular epithelium 1
gonad 510
gonadal fat pad 5
granular layer of cerebellar cortex 1
gray matter 386
gray matter of diencephalon 6
gray matter of forebrain 344
gray matter of hindbrain 4
gray matter of midbrain 1
gray matter of telencephalon 338
great vessel of heart 67
habenula 43
habenular nucleus 11
haemolymphatic fluid 659
hair follicle 58
hair follicle bulge 10
hair follicle placode 4
hair inner root sheath 7
hair medulla 2
hair outer root sheath 1
hair root sheath 8
hair shaft 5
hatching gland 5
head blood vessel 3
head bone 3
head kidney 48
head mesenchyme 2
head sensillum 1
heart 578
heart blood vessel 25
heart layer 12
heart left ventricle 9
heart primordium 4
heart right ventricle 4
hematopoietic system 2
hematopoietic tissue 19
hemolymphoid system gland 124
hemopoietic organ 379
hepatic portal vein 1
hepatic sinusoid 3
hepatopancreas 1
heterogeneous tissue 33
hindbrain 31
hindbrain nucleus 15
hindgut 1
hindlimb muscle 71
hippocampal field 17
hippocampal formation 12
holocrine gland 6
hypoblast (generic) 11
hypochord 1
hypodermis 44
hypothalamic nucleus 86
hypothalamus 141
ileum 84
imaginal disc 46
immaterial anatomical entity 46
immature eye 6
immune organ 529
immune system 51
incisor tooth 35
inferior cervical ganglion 8
infundibulum of hair follicle 8
inguinal lymph node 4
inner cell mass 7
inner cell mass derived hypoblast 10
inner dental epithelium 4
inner nuclear layer of retina 1
inner plexiform layer of retina 1
insect region of integument 1
integumental system 4
integumentary adnexa 13
integumentary projection 7
integumentary system layer 54
intercerebral commissure 4
intermediate mesoderm 2
internal ear 28
interstitial tissue 8
interventricular septum 1
intestinal epithelium 58
Intestinal organoid 56
intestine 232
irregular connective tissue 223
islet of Langerhans 101
jaw region 1
jejunum 20
kidney 685
kidney epithelium 118
kidney interstitium 7
Kidney organoid 78
kidney pelvis urothelium 3
kidney vasculature 1
lacrimal gland 15
lamina 25
large intestine 33
larva 69
late embryonic stage 138
lateral ganglionic eminence 1
lateral gland of orbital region 15
lateral globus pallidus 69
lateral habenular nucleus 5
lateral line primordium 2
lateral line system 15
lateral nasal process mesenchyme 2
lateral plate 5
lateral plate mesoderm 11
lateral structure 2011
layer of muscle tissue 9
layer of neocortex 1
layer of retina 17
layer of synovial tissue 44
left cardiac atrium 2
left cardiac chamber 11
lens placode 4
leptomeninx 33
life cycle stage 537
limb 36
limb mesenchyme 1
limb muscle 98
limiting membrane of retina 1
line of Schwalbe 1
liver 517
liver blood vessel 4
liver bud 36
liver primordium 1
lobe of cerebral hemisphere 17
long bone 42
loop of Henle 15
loop of Henle ascending limb thin segment 3
lower respiratory tract epithelium 1
lumbar dorsal root ganglion 11
lumbar spinal cord 50
lung 1062
lung bud 2
lung epithelium 1
lung mesenchyme 8
lung primordium 1
lymph 2
lymph node 198
lymph node germinal center 1
lymph node medullary sinus 1
lymphoid tissue 14
lymphomyeloid tissue 33
major salivary gland 7
male accessory sex gland 84
male reproductive gland 92
male reproductive organ 274
mammary gland 201
mantle 4
maxillary process mesenchyme 1
mechanoreceptor 4
medial ganglionic eminence 8
medial globus pallidus 35
medial habenular nucleus 6
median eminence of neurohypophysis 74
median fin 4
mediastinal lymph node 6
medulla oblongata 1
medulla of organ 7
membrane bone 8
membrane organ 42
membranous layer 8
meninx 42
mesangium 1
mesenchyme 79
mesenchyme derived from head neural crest 2
mesenchyme derived from neural crest 2
mesenchyme from somatopleure 2
mesenchyme of fronto-nasal process 2
mesenteric fat pad 8
mesenteric lymph node 44
meso-epithelium 74
mesoderm 207
mesoderm-derived structure 3156
mesonephric epithelium 5
mesonephric tubule 5
mesothelium 2
mesothoracic tergum 1
metanephric cap 8
midbrain 46
midbrain nucleus 61
midbrain tectum 1
midbrain-hindbrain boundary 1
midgut 27
mixed endoderm/mesoderm-derived structure 249
molecular layer of cerebellar cortex 1
morphological feature 7
morula 1
mouth mucosa 9
mucosa 36
mucosa of oral region 1
mucous gland 2
multi cell part structure 1075
multi organ part structure 133
multi-tissue structure 1341
multicellular organism 499
multilaminar epithelium 15
muscle layer of intestine 1
muscle layer of rectum 1
muscle of leg 7
muscle organ 218
muscle structure 262
muscle tissue 8
muscular coat 2
muscular coat of digestive tract 2
musculature 125
musculature of body wall 81
myocardium 7
myoepithelium 1
nasal cavity epithelium 43
nasal cavity mucosa 18
nasolacrimal groove 2
nasopharynx 1
neck of organ 18
neocortex 101
neonate stage 131
nephric duct 4
nephron 20
nephron epithelium 104
nephron progenitor 6
nephron tubule 108
nerve 2
nerve ending 4
nerve fiber layer of retina 1
nerve of head region 2
nervous system 265
nervous system cell part layer 145
nervous system commissure 8
neural crest 31
neural crest-derived structure 203
neural nucleus 337
neural plate 3
neural tube 4
neural tube basal plate 1
neurectoderm 5
neuroendocrine gland 108
neurogenic placode 26
neurohypophysis 7
neuron projection bundle 20
nociceptor 4
nodosal placode 18
non-material anatomical boundary 2
non-neural ectoderm 1
non-neurogenic ectodermal placode 9
nonsynovial joint 5
nose epithelium 45
notochord 5
nuclear complex of neuraxis 21
nucleus of brain 337
nucleus of cerebellar nuclear complex 2
nucleus of dorsal thalamus 38
nucleus of medulla oblongata 2
nucleus of thalamus 84
nucleus of ventral thalamus 35
olfactory bulb 59
olfactory epithelium 7
olfactory placode 2
olfactory region 5
omentum 32
optic choroid 20
optic cup 3
oral gland 12
organ component layer 569
organ part 2914
organ subunit 247
organ system subdivision 591
organism subdivision 334
organism substance 775
Organoid 15
otic placode 4
otolith organ 6
outer dental epithelium 6
outer epithelium 33
outer plexiform layer of retina 1
outer root sheath companion layer 2
outer spiral sulcus 10
outflow tract 7
ovary 226
oviduct 1
paired limb/fin 72
paired limb/fin bud 3
paired limb/fin bud mesenchyme 2
pancreas 481
pancreas primordium 1
pancreatic duct 1
panniculus adiposus 2
parabrachial nucleus 11
pararenal fat 1
parathyroid gland 3
paravertebral ganglion 8
paraxial mesoderm 12
parenchyma 26
parenchyma of central nervous system 26
parietal endoderm 2
pars intermedia of adenohypophysis 7
pars tuberalis of adenohypophysis 7
pectoral appendage 36
pectoral appendage bud 3
pectoral appendage bud mesenchyme 2
pelvic appendage muscle 71
pelvic complex muscle 71
pelvic region element 8
perichondrium 3
perichordal tissue 2
periderm 5
peripheral lymph node 21
peripheral region of retina 53
peritoneal fluid 18
perivascular space 26
pharyngeal arch 3
pharyngeal arch system 6
pharyngeal epithelium 1
pharyngeal gland 1
pharyngeal mesoderm 9
pharyngeal muscle 1
pharyngeal pouch 1
pharynx 75
photoreceptor array 443
pia mater 2
pigment epithelium of eye 13
pigmented layer of retina 12
pineal body 1
pit 1
pituitary gland 25
placenta 175
pleura 15
pons 5
pore 3
portal vein 1
post-anal tail bud 14
post-embryonic organism 269
posterior nuclear complex of thalamus 4
posterior region of body 1
postnatal subventricular zone 9
prechordal plate 4
preoptic area 66
presomitic mesoderm 7
presumptive cephalic mesoderm 1
presumptive retinal pigmented epithelium 2
presumptive structure 55
pretectal nucleus 3
primary circulatory organ 578
primary heart field 2
primary subdivision of skull 6
primary visual cortex 49
primitive palate 1
primitive streak 6
primordium 58
processual entity 537
proctodeum 1
proliferative region 2
pronephric duct 4
prostate epithelium 10
prostate gland 84
Prostatic organoid 10
protuberance 3
proximal convoluted tubule 5
proximal straight tubule 1
proximal tubule 31
proximal-distal subdivision of colon 61
proximo-distal subdivision of respiratory tract 1
pseudostratified ciliated columnar epithelium 44
quadriceps femoris 28
rectum 38
red pulp of spleen 1
regional part of brain 1128
regional part of nervous system 1232
regional part of spinal cord 51
renal connecting tubule 8
renal convoluted tubule 1
renal duct 4
renal glomerulus 16
renal medulla collecting duct 2
renal tubule 108
renal vesicle 4
reproductive gland 95
reproductive organ 1012
reproductive structure 1598
reproductive system mucosa 9
respiration organ 1062
respiratory airway 20
respiratory system 1
respiratory system epithelium 45
respiratory system gland 3
respiratory system mucosa 18
respiratory system muscle 5
respiratory tract epithelium 44
respiratory tube 68
reticuloendothelial system 1
retina 443
Retinal organoid 73
rhombic lip 1
rib 42
rib endochondral element 42
right cardiac atrium 4
right cardiac chamber 8
ring gland 1
roof of mouth 1
roof plate 2
root 58
S-shaped body 7
sac 210
saliva-secreting gland 12
sebaceous gland 6
secondary heart field 19
secondary palatal shelf 1
secretion of exocrine gland 33
secretion of serous gland 33
secretory circumventricular organ 83
seminal fluid secreting gland 8
seminal vesicle 8
seminiferous tubule of testis 130
sense organ 132
sensory epithelium 7
sensory ganglion 18
sensory organ epithelium 58
sensory receptor 4
sensory system 15
septum 1
septum transversum 8
serous membrane 59
sigmoid colon 14
simple columnar epithelium 119
simple cuboidal epithelium 1
simple squamous epithelium 20
sinus venosus 5
sinusoid 3
skeletal element 223
skeletal joint 5
skeletal muscle of trunk 5
skeletal muscle organ 211
skeletal tissue 1
skin appendage follicle 58
skin appendage placode 4
skin epidermis 33
skin epithelium 10
skin gland 6
skin of body 160
skin sebaceous gland 1
skull 15
small intestine 255
smooth muscle tissue 4
soleus muscle 7
somatosensory cortex 15
somite 111
spinal cord 162
spinal cord column 39
spinal cord segment 50
spiral sulcus 10
splanchnic layer of lateral plate mesoderm 3
spleen 207
spleen pulp 2
squamous epithelium 20
stellate reticulum 5
stomach 168
strand of hair 2
stratum basale of epidermis 1
stratum intermedium of tooth 4
striated muscle tissue 4
striatum 142
stroma 43
structure with developmental contribution from neural crest 2102
subcapsular sinus of lymph node 3
subcommissural organ 1
subcutaneous adipose tissue 49
subdivision of digestive tract 1504
subdivision of head 26
subdivision of oviduct 89
subdivision of skeletal system 21
subdivision of skeleton 26
subdivision of tube 1605
subiculum 1
submandibular gland 7
submucosal gland 2
substantia nigra 61
subthalamic nucleus 35
sulcus 10
superior colliculus 17
surface structure 70
sympathetic ganglion 8
syncytiotrophoblast 1
synovial fluid 15
systemic artery 25
systemic vein 3
telencephalic nucleus 75
telencephalon 84
temporal lobe 17
tergum 1
testis 274
thalamic complex 2
thick ascending limb of loop of Henle 6
thoracic cavity blood vessel 67
thoracic cavity element 1116
thoracic lymph node 6
thoracic segment blood vessel 25
thoracic segment muscle 5
thoracic segment organ 1705
thymus 124
thyroid gland 31
thyroid primordium 1
tissue 3254
tongue 10
tonsil 10
tonsil germinal center 1
tooth enamel organ 1
tooth row 1
tooth-like structure 35
torus longitudinalis 2
trachea 55
tracheal mucosa 18
tract of brain 8
transitional anatomical structure 2
transparent eye structure 1
transudate 50
transverse colon 36
trigeminal placode complex 1
trophectoderm 6
trophoblast 8
trunk blood vessel 30
trunk connective tissue 57
trunk ganglion 8
trunk mesoderm derivative 5
trunk region element 4161
tube 639
tunica intima 5
umbilical cord blood 69
unilaminar epithelium 159
upper respiratory tract epithelium 43
upper rhombic lip 1
ureter 8
ureteric bud 2
ureteric bud tip 3
urethra 4
urinary bladder 66
Urothelial organoid 10
urothelium 15
urothelium of ureter 2
uterine cervix 18
uterus 64
utricle of membranous labyrinth 6
uvea 1
vagina 4
vagus X ganglion 24
vas deferens 23
vasa recta descending limb 1
vascular plexus 32
vasculature 148
vasculature of central nervous system 32
vasculature of central nervous system plus retina 32
vasculature of eye 20
vasculature of head 20
vasculature of integument 7
vasculature of organ 53
vasculature of trunk 1
vastus lateralis 28
vault of skull 25
vein 5
vein of abdomen 1
venous blood vessel 5
ventral body wall 1
ventral ectoderm derivative 1
ventral epidermis primordium 1
ventral horn of spinal cord 13
ventral part of telencephalon 1
ventral tegmental area 1
ventral thalamus 1
ventral zone 3
ventricular zone 4
vermiform appendix 17
vessel 312
vestibular organ 6
vestibulocochlear ganglion 1
visceral abdominal adipose tissue 57
visceral abdominal lymph node 44
visceral endoderm 6
visceral mesoderm 2
visceral mesoderm derivative 5
viscus 786
visual processing part of nervous system 68
white adipose tissue 33
white pulp of spleen 1
wing disc 31
yolk sac 4
zona limitans intrathalamica 1
zone of bone organ 2
zone of long bone 2
zone of organ 223
zone of skin 168
zygote stage 2
OntologyMarker gene sets
abnormal cell 260
absorptive cell 130
acid secreting cell 850
acidophil cell of pars distalis of adenohypophysis 4
acinar cell 51
acinar cell of salivary gland 4
activated CD4-positive, alpha-beta T cell 17
activated CD8-positive, alpha-beta T cell 12
activated CD8-positive, alpha-beta T cell, human 3
activated type II NK T cell 2
adaxial cell 3
adipose microvascular endothelial cell 1
adrenal gland glandular cell 7
adrenal medulla chromaffin cell 1
adrenergic neuron 1
adrenocorticotropic hormone secreting cell 2
adult skeletal muscle myoblast 1
adventitial cell 1
afferent neuron 202
alarm substance cell 4
alpha-beta T cell 531
alternatively activated macrophage 39
alveolar macrophage 10
amacrine cell 87
ameloblast 1
amine precursor uptake and decarboxylation cell 24
androgen binding protein secreting cell 26
androgen secreting cell 6
animal zygote 1
antibody secreting cell 11
anucleate cell 6
aortic endothelial cell 10
aortic smooth muscle cell 4
appendix glandular cell 1
arcade cell 6
astrocyte 201
astrocyte of the cerebellum 3
astrocyte of the cerebral cortex 4
astrocyte of the forebrain 1
astrocyte of the spinal cord 1
attachment cell 6
auditory epithelial cell 25
auditory epithelial support cell 24
auditory hair cell 10
autonomic neuron 12
B cell 236
B-2 B cell 4
barrier cell 1020
basal cell 113
basal cell of epidermis 19
basal cell of epithelium of bronchus 2
basal cell of prostate epithelium 8
basal cell of urothelium 4
basal epithelial cell of tracheobronchial tree 2
basket cell 1
basophil 25
basophil cell of pars distalis of adenohypophysis 5
basophil mast progenitor cell 4
basophil progenitor cell 4
beige adipocyte 1
Bergmann glial cell 6
biogenic amine secreting cell 126
bipolar neuron 105
bladder cell 6
bladder urothelial cell 3
blastoderm cell 2
blood cell 444
blood cell (sensu Nematoda and Protostomia) 7
blood vessel endothelial cell 281
Bm4 B cell 10
bone cell 131
bone marrow cell 89
bone marrow hematopoietic cell 59
bone marrow macrophage 11
border cell of cochlea 3
border follicle cell 1
brain macroglial cell 1
brain microvascular endothelial cell 1
brain pericyte 45
branched duct epithelial cell 87
bronchial epithelial cell 26
bronchial smooth muscle cell 3
brown fat cell 4
brush border epithelial cell 158
brush cell 27
brush cell of epithelium proper of large intestine 2
buccal mucosa cell 2
Cajal-Retzius cell 10
camera-type eye photoreceptor cell 34
cap cell 1
capillary endothelial cell 60
carbohydrate secreting cell 41
cardiac blood vessel endothelial cell 9
cardiac endothelial cell 51
cardiac glial cell 1
cardiac mesenchymal cell 8
cardiac muscle cell 97
cardiac muscle myoblast 3
cardiac myoblast 3
cardinal organ part 8
cardinal part of multi-tissue plant structure 8
cardioblast 10
cardiocyte 223
CD103-positive dendritic cell 4
CD115-positive monocyte OR common dendritic progenitor 2
CD14-low, CD16-positive monocyte 6
CD14-positive monocyte 26
CD14-positive, CD16-low monocyte 1
CD14-positive, CD16-negative classical monocyte 2
CD14-positive, CD16-positive monocyte 6
CD141-positive myeloid dendritic cell 1
CD16-negative, CD56-bright natural killer cell 5
CD16-positive myeloid dendritic cell 1
CD16-positive, CD56-dim natural killer cell 15
CD1c-positive myeloid dendritic cell 2
CD34-positive, CD38-negative multipotent progenitor cell 1
CD4-positive helper T cell 3
CD4-positive, alpha-beta cytotoxic T cell 8
CD4-positive, alpha-beta memory T cell 8
CD4-positive, alpha-beta T cell 83
CD4-positive, CD25-positive, alpha-beta regulatory T cell 18
CD4-positive, CD8-intermediate double-positive thymocyte 1
CD56-negative, CD161-positive immature natural killer cell 2
CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor 25
CD8-positive, alpha-beta cytokine secreting effector T cell 4
CD8-positive, alpha-beta cytotoxic T cell 6
CD8-positive, alpha-beta memory T cell 16
CD8-positive, alpha-beta T cell 107
CD94-positive natural killer cell 2
cell of skeletal muscle 56
central memory CD4-positive, alpha-beta T cell 11
central memory CD8-positive, alpha-beta T cell 5
central nervous system macrophage 217
central nervous system neuron 469
central nervous system pericyte 46
central root cap 1
centripetally migrating follicle cell 1
cerebellar granule cell 8
cerebellar neuron 34
cerebellum glutamatergic neuron 2
cerebral cortex endothelial cell 7
cerebral cortex GABAergic interneuron 6
cerebral cortex glial cell 5
cerebral cortex neuron 47
chemoreceptor cell 46
cholangiocyte 14
cholinergic neuron 64
chondrocyte 41
choroid plexus epithelial cell 4
chromaffin cell 24
chromaffin cell of adrenal gland 1
chromophil cell of anterior pituitary gland 9
ciliary muscle cell 3
ciliated cell 253
ciliated cell of the bronchus 2
ciliated columnar cell of tracheobronchial tree 9
ciliated epithelial cell 233
ciliated olfactory receptor neuron 1
circulating cell 6
class switched memory B cell 3
classical monocyte 20
Claudius cell 2
clear cell of eccrine sweat gland 1
club cell 24
CNS interneuron 12
CNS neuron (sensu Nematoda and Protostomia) 6
CNS neuron (sensu Vertebrata) 321
cochlear inner hair cell 3
coelomocyte 6
cold sensing thermoreceptor cell 1
collagen secreting cell 41
colon endothelial cell 2
colon epithelial cell 7
colon glandular cell 2
columella 2
columnar cell of endocervix 1
columnar/cuboidal epithelial cell 379
common lymphoid progenitor 15
common myeloid progenitor 5
common myeloid progenitor, CD34-positive 1
companion cell 1
cone retinal bipolar cell 29
conjunctival epithelial cell 21
connective tissue cell 1066
contractile cell 942
conventional dendritic cell 95
copper accumulating cell 1
corneal endothelial cell 1
corneal epithelial cell 6
cortex 7
cortical cell of adrenal gland 6
cortical granule cell 5
cortical thymic epithelial cell 3
corticotroph 2
crypt olfactory receptor neuron 1
crystal cell 3
crystallin accumulating cell 8
cumulus cell 6
cytotoxic T cell 3
dark cell of eccrine sweat gland 1
decidual cell 5
decidual natural killer cell 5
defensive cell 963
Deiter's cell 3
dendritic cell 367
dendritic cell, human 19
dental pulp cell 4
dentate gyrus of hippocampal formation granule cell 2
distal tip cell (sensu Nematoda) 2
DN1 thymic pro-T cell 2
DN3 thymocyte 1
DN4 thymocyte 1
dopaminergic neuron 35
double negative thymocyte 4
duct epithelial cell 160
duodenum glandular cell 1
early embryonic cell 5
early lymphoid progenitor 7
early pro-B cell 2
eccrine cell 2
ecto-epithelial cell 329
ectodermal cell 20
effector CD4-positive, alpha-beta T cell 1
effector memory CD4-positive, alpha-beta T cell 12
effector memory CD8-positive, alpha-beta T cell 18
effector memory CD8-positive, alpha-beta T cell, terminally differentiated 4
effector T cell 2
efferent neuron 33
electrically active cell 8140
electrically responsive cell 4473
electrically signaling cell 3667
elicited macrophage 73
embryonic blood vessel endothelial progenitor cell 2
embryonic cell 163
embryonic fibroblast 4
embryonic stem cell 36
endo-epithelial cell 498
endocardial cell 17
endocrine cell 342
endocrine-paracrine cell of prostate gland 4
endodermal cell 22
endodermis 7
endopolyploid cell 65
endorphin secreting cell 9
endothelial cell 940
endothelial cell of arteriole 4
endothelial cell of artery 72
endothelial cell of coronary artery 8
endothelial cell of hepatic sinusoid 9
endothelial cell of high endothelial venule 2
endothelial cell of lymphatic vessel 42
endothelial cell of sinusoid 9
endothelial cell of vascular tree 435
endothelial cell of venule 6
endothelial cell of viscerocranial mucosa 3
endothelial stalk cell 34
endothelial tip cell 30
enkephalin secreting cell 9
enteric neuron 10
enteric smooth muscle cell 2
enterocyte 129
enterocyte of epithelium of large intestine 6
enterocyte of epithelium of small intestine 36
enteroendocrine cell 151
eosinophil 16
eosinophil progenitor cell 3
ependymal cell 54
epiblast cell 15
epicardial adipocyte 7
epidermal cell 13
epidermal cell 115
epidermal cell (sensu arthropoda) 1
epidermal melanocyte 1
epidermis 1
epidermoblast 1
epididymis glandular cell 1
epithelial cell 4848
epithelial cell of alimentary canal 330
epithelial cell of alveolus of lung 90
epithelial cell of appendix 1
epithelial cell of cervix 3
epithelial cell of distal tubule 7
epithelial cell of esophagus 3
epithelial cell of exocrine pancreas 66
epithelial cell of gall bladder 1
epithelial cell of large intestine 28
epithelial cell of lower respiratory tract 41
epithelial cell of lung 157
epithelial cell of nephron 237
epithelial cell of pancreas 167
epithelial cell of prostate 28
epithelial cell of proximal tubule 27
epithelial cell of skin gland 2
epithelial cell of small intestine 58
epithelial cell of stomach 34
epithelial cell of sweat gland 2
epithelial cell of thymus 40
epithelial cell of thyroid gland 3
epithelial cell of tracheobronchial tree 41
epithelial cell of uterus 8
epithelial fate stem cell 129
epithelial melanocyte 1
erythroblast 62
erythrocyte 56
erythroid lineage cell 240
erythroid progenitor cell 12
erythroid progenitor cell, mammalian 2
excitatory motor neuron 3
excitatory neuron 196
excretory cell 85
exhausted T cell 2
exocrine cell 59
extracellular matrix secreting cell 116
extraembryonic cell 74
extravillous trophoblast 12
eye photoreceptor cell 35
fast muscle cell 5
fat cell 42
female germ cell 19
fenestrated cell 19
fetal cardiomyocyte 5
fibroblast 393
fibroblast neural crest derived 1
fibroblast of cardiac tissue 47
fibroblast of connective tissue of prostate 1
fibroblast of dermis 2
fibroblast of lung 48
fibroblast of mammary gland 11
fibrocyte 8
flatworm hypodermal cell 24
follicle stem cell 2
follicular B cell 4
follicular cell of ovary 21
follicular dendritic cell 3
folliculostellate cell 1
forebrain neuroblast 1
Fraction A pre-pro B cell 2
GABAergic interneuron 26
GABAergic neuron 382
gall bladder glandular cell 1
gamete 5
gamma-delta T cell 13
gamma-delta thymocyte 1
gastric goblet cell 2
gastrin secreting cell 2
general ecto-epithelial cell 139
germ cell 279
germ line cell 345
germ line stem cell 26
germ line stem cell (sensu Vertebrata) 13
germinal center B cell 18
gestational hematopoietic stem cell 2
ghrelin secreting cell 5
glandular cell of endometrium 2
glandular cell of stomach 32
glandular cell of the large intestine 7
glandular epithelial cell 427
glial cell 838
glial cell (sensu Nematoda and Protostomia) 65
glial cell (sensu Vertebrata) 731
glioblast 2
glomerular capillary endothelial cell 1
glomerular cell 56
glomerular endothelial cell 16
glomerular visceral epithelial cell 37
glucagon secreting cell 30
glucocorticoid secreting cell 1
glutamatergic neuron 455
glycinergic neuron 9
glycosaminoglycan secreting cell 41
goblet cell 60
gonadtroph 2
granular cell of epidermis 1
granule cell 33
granulocyte 359
granulocyte monocyte progenitor cell 25
granulocytopoietic cell 20
granulosa cell 14
ground tissue cell 3
group 1 innate lymphoid cell 225
group 2 innate lymphoid cell 16
group 2 innate lymphoid cell, mouse 4
group 3 innate lymphoid cell 11
gut absorptive cell 129
gut endothelial cell 3
hair follicle cell 19
hair follicle dermal papilla cell 1
hair follicle dermal papilla cell of scalp 1
haploid cell 85
hatching gland cell 3
heart valve cell 10
helper T cell 3
hemangioblast 5
hematopoietic cell 9412
hematopoietic lineage restricted progenitor cell 78
hematopoietic multipotent progenitor cell 27
hematopoietic oligopotent progenitor cell 65
hematopoietic oligopotent progenitor cell, lineage-negative 25
hematopoietic precursor cell 276
hematopoietic stem cell 77
hemocyte (sensu Nematoda and Protostomia) 18
Hensen cell 3
hepatic pit cell 13
hepatic stellate cell 9
hepatic stem cell 2
hepatoblast 9
hepatocyte 65
hippocampal granule cell 3
hippocampal neuron 14
hippocampal pyramidal neuron 10
histamine secreting cell 93
histaminergic neuron 1
Hofbauer cell 2
hypertrophic chondrocyte 2
hypothalamus native cell 2
IgA plasma cell 3
IgA plasmablast 3
IgD-negative memory B cell 1
IgG plasma cell 3
IgG plasmablast 2
IgM memory B cell 1
IgM plasma cell 1
IgM plasmablast 1
ILC1 5
immature B cell 8
immature conventional dendritic cell 1
immature microglial cell 1
immature natural killer cell 1
immature NK T cell 16
immature T cell 22
induced T-regulatory cell 9
inflammatory cell 4
inflammatory macrophage 33
inhibitory interneuron 47
inhibitory motor neuron 4
inhibitory neuron 94
initial cell 2
innate lymphoid cell 279
inner cell mass native cell 5
inner phalangeal cell 3
inner renal cortex cell 1
insulating cell 3
insulin secreting cell 34
interdental cell of cochlea 3
interfollicle cell 1
interlobulary artery endothelial cell 1
intermediate mesodermal cell 1
intermediate monocyte 7
interneuron 380
interstitial cell of Cajal 2
intestinal crypt stem cell 3
intestinal enteroendocrine cell 18
intestinal epithelial cell 275
intraepithelial lymphocyte 1
ionocyte 10
iron accumulating cell 1
juxtaglomerular complex cell 1
Kenyon cell 6
keratin accumulating cell 64
keratinized cell of hair follicle 2
keratinized cell of the oral mucosa 2
keratinized squamous cell of esophagus 1
keratinizing barrier epithelial cell 64
keratinocyte 63
keratinocyte stem cell 5
kidney afferent arteriole cell 1
kidney afferent arteriole endothelial cell 1
kidney arterial blood vessel cell 4
kidney blood vessel cell 12
kidney capillary endothelial cell 6
kidney cell 421
kidney collecting duct cell 46
kidney collecting duct epithelial cell 33
kidney collecting duct intercalated cell 16
kidney collecting duct principal cell 14
kidney connecting tubule epithelial cell 1
kidney corpuscule cell 58
kidney cortex artery cell 1
kidney cortex collecting duct epithelial cell 2
kidney cortex collecting duct principal cell 2
kidney cortex tubule cell 62
kidney cortical cell 78
kidney distal convoluted tubule epithelial cell 6
kidney efferent arteriole cell 1
kidney efferent arteriole endothelial cell 1
kidney epithelial cell 385
kidney interstitial cell 17
kidney interstitial myofibroblast 1
kidney loop of Henle ascending limb epithelial cell 4
kidney loop of Henle descending limb epithelial cell 1
kidney loop of Henle epithelial cell 18
kidney loop of Henle thick ascending limb epithelial cell 1
kidney medulla cell 12
kidney outer medulla cell 3
kidney proximal convoluted tubule epithelial cell 2
kidney proximal straight tubule epithelial cell 3
kidney tubule cell 130
kidney venous blood vessel cell 2
Kit and Sca1-positive hematopoietic stem cell 2
Kit-positive granulocyte monocyte progenitor 3
Kupffer cell 23
lamellocyte 3
Langerhans cell 9
large intestine goblet cell 6
large luteal cell 1
late pro-B cell 5
lateral root 1
lateral root cap 1
lens epithelial cell 1
lens fiber cell 1
leptomeningeal cell 25
leucophore 4
leukocyte 6463
Leydig cell 39
lining cell 1017
liver dendritic cell 1
long term hematopoietic stem cell 1
lower urinary tract cell 8
luminal cell of prostate epithelium 11
luminal epithelial cell of mammary gland 32
lung ciliated cell 3
lung endothelial cell 52
lung goblet cell 3
lung macrophage 96
lung microvascular endothelial cell 1
lung neuroendocrine cell 3
lung secretory cell 50
luteal cell 7
luteinizing hormone secreting cell 2
lymphocyte 2554
lymphocyte of B lineage 580
lymphoid lineage restricted progenitor cell 16
lymphoid tissue–inducer cell 3
lysozyme secreting cell 29
M cell of gut 3
macroglial cell 414
macrophage 896
macrophage dendritic cell progenitor 1
male gamete 5
male germ cell 251
male germ line stem cell 13
male germ line stem cell (sensu Vertebrata) 13
male gonocyte 1
malignant cell 5
mammary alveolar cell 8
mammary gland epithelial cell 43
mammary gland glandular cell 9
mammotroph 2
marginal zone B cell 2
mast cell 92
mast cell progenitor 2
mature alpha-beta T cell 520
mature B cell 64
mature conventional dendritic cell 2
mature microglial cell 7
mature natural killer cell 5
mature neutrophil 1
mature NK T cell 21
mature T cell 691
mechanoreceptor cell 28
medium spiny neuron 51
medullary thymic epithelial cell 34
megakaryocyte 23
megakaryocyte progenitor cell 14
megakaryocyte-erythroid progenitor cell 19
melanoblast 1
melanocyte 35
melanocyte of skin 11
melanocyte stimulating hormone secreting cell 2
memory B cell 14
memory regulatory T cell 11
memory T cell 102
meristematic cell 2
mesangial cell 10
mesangial phagocyte 5
mesenchymal cell 115
mesenchymal stem cell 38
mesenchymal stem cell of adipose 5
meso-epithelial cell 1165
mesodermal cell 52
mesothelial cell 77
metabolising cell 65
metal ion accumulating cell 2
metamyelocyte 1
metanephric mesenchyme stem cell 1
microfold cell of epithelium of small intestine 2
microglial cell 201
microvascular endothelial cell 4
midbrain dopaminergic neuron 1
milk secreting cell 8
mineralocorticoid secreting cell 1
mitogenic signaling cell 4
mitral cell 7
monocyte 369
mononuclear cell 3292
mononuclear cytotrophoblast cell 15
mononuclear phagocyte 10
monopoietic cell 6
morula cell 1
motile cell 6527
motor neuron 13
mucosal invariant T cell 6
mucous cell of stomach 9
mucous neck cell 3
mucus neck cell of gastric gland 2
mucus secreting cell 68
Mueller cell 10
Muller cell 14
multi fate stem cell 201
multi-ciliated epithelial cell 15
multi-potent skeletal muscle stem cell 9
multi-tissue plant structure 59
multinucleate cell 41
mural cell 149
muscle cell 736
muscle precursor cell 56
myelin accumulating cell 3
myelinating Schwann cell 3
myelocyte 1
myeloid cell 2153
myeloid dendritic cell 13
myeloid dendritic cell, human 2
myeloid leukocyte 1757
myeloid lineage restricted progenitor cell 59
myoblast 30
myocardial endocrine cell 4
myoepithelial cell 19
myoepithelial cell of lactiferous gland 2
myoepithelial cell of mammary gland 2
myofibroblast cell 40
myotube 12
naive B cell 11
naive regulatory T cell 5
naive T cell 56
naive thymus-derived CD4-positive, alpha-beta T cell 30
naive thymus-derived CD8-positive, alpha-beta T cell 12
native plant cell 18
natural killer cell 218
natural T-regulatory cell 3
neoplastic cell 260
nephrogenic mesenchyme stem cell 4
nephron tubule epithelial cell 63
neural cell 5085
neural crest cell 13
neural progenitor cell 18
neurecto-epithelial cell 129
neuroblast (sensu Vertebrata) 64
neuroendocrine cell 40
neuromast hair cell 3
neuromast mantle cell 2
neuromast support cell 9
neuron 3697
neuron associated cell 978
neuron associated cell (sensu Vertebrata) 140
neuron neural crest derived 10
neuron of cerebral cortex 59
neuron of the forebrain 79
neuronal brush cell 3
neuronal receptor cell 82
neuronal stem cell 46
neutrophil 278
neutrophil progenitor cell 4
nitrergic neuron 3
non-branched duct epithelial cell 33
non-classical monocyte 18
non-hair root epidermal cell 6
non-myelinating Schwann cell 1
non-pigmented ciliary epithelial cell 1
non-striated muscle cell 278
non-terminally differentiated cell 166
noradrenergic cell 11
noradrenergic neuron 11
notochordal cell 2
nucleate cell 7694
nucleated thrombocyte 2
OFF-bipolar cell 16
olfactory bulb interneuron 12
olfactory bulb tufted cell 7
olfactory epithelial cell 3
olfactory granule cell 7
olfactory receptor cell 30
oligodendrocyte 195
oligodendrocyte precursor cell 138
ON-bipolar cell 18
oocyte 15
oral mucosa squamous cell 1
organ of Corti supporting cell 14
osteoblast 20
osteoclast 11
osteocyte 1
outer hair cell 4
ovarian follicle cell 18
ovarian surface epithelial cell 20
oviduct glandular cell 5
oxygen accumulating cell 56
pain receptor cell 12
pancreas exocrine glandular cell 24
pancreatic A cell 28
pancreatic acinar cell 23
pancreatic centro-acinar cell 1
pancreatic D cell 14
pancreatic ductal cell 41
pancreatic endocrine cell 100
pancreatic epsilon cell 5
pancreatic PP cell 9
pancreatic stellate cell 6
paneth cell 29
paneth cell of epithelium of small intestine 3
parathyroid glandular cell 2
parenchyma 3
parenchyma cell 1
parietal cell 5
parietal epithelial cell 1
peptic cell 7
peptide hormone secreting cell 126
peptidergic neuron 24
pericycle 2
pericycle cell 2
pericyte cell 147
peridermal cell 11
periglomerular cell 3
perineuronal satellite cell 2
peripheral nervous system neuron 12
peripheral neuron 2
peritubular myoid cell 11
perivascular macrophage 11
phagocyte 953
phagocyte (sensu Nematoda and Protostomia) 24
phagocyte (sensu Vertebrata) 10
phalangeal cell 6
phloem 5
phloem pole pericycle cell 1
photoreceptor cell 47
photosynthetic cell 1
pigment cell 66
pigmented ciliary epithelial cell 1
pigmented epithelial cell 2
pillar cell 5
pituicyte 1
pituitary gland cell 14
placental amniotic mesenchymal stromal cell 2
placental hematopoietic stem cell 1
placental villous trophoblast 11
plant anatomical entity 115
plant axis 59
plant cell 18
plant organ 59
plant structure 115
plasma cell 146
plasmablast 11
plasmacytoid dendritic cell 43
plasmacytoid dendritic cell, human 2
plasmatocyte 8
platelet 6
pluripotent stem cell 16
pneumocyte 90
podocyte (sensu Diptera) 4
polar body 1
polyploid cell 65
portion of ground tissue 19
portion of meristem tissue 1
portion of plant tissue 30
portion of vascular tissue 7
PP cell 11
pre-natural killer cell 1
preadipocyte 7
preameloblast 2
precursor B cell 13
precursor cell 1395
preodontoblast 1
preosteoblast 1
prickle cell 3
primitive erythroid lineage cell 75
primitive erythroid progenitor 9
primitive red blood cell 65
primordial germ cell 27
pro-B cell 10
pro-NK cell 1
pro-T cell 2
proerythroblast 5
professional antigen presenting cell 1336
progenitor cell of endocrine pancreas 32
progesterone secreting cell 7
prohemocyte (sensu Nematoda and Protostomia) 7
prolactin secreting cell 2
promonocyte 6
pronephric nephron tubule epithelial cell 1
prostate gland microvascular endothelial cell 1
prostate stem cell 1
protein secreting cell 155
pulmonary interstitial fibroblast 9
Purkinje cell 20
pyramidal neuron 41
radial glial cell 71
receptor cell 103
rectum glandular cell 1
red muscle cell 1
regular atrial cardiac myocyte 7
regular cardiac myocyte 8
regular ventricular cardiac myocyte 1
regulatory T cell 82
renal alpha-intercalated cell 3
renal beta-intercalated cell 3
renal cortical epithelial cell 80
renal filtration cell 37
renal intercalated cell 39
renal interstitial pericyte 2
renal principal cell 25
respiratory basal cell 13
respiratory epithelial cell 58
respiratory goblet cell 6
reticular cell 6
reticulocyte 1
retina horizontal cell 20
retinal bipolar neuron 99
retinal blood vessel endothelial cell 4
retinal cell 322
retinal cone cell 19
retinal ganglion cell 122
retinal melanocyte 1
retinal pigment epithelial cell 15
retinal progenitor cell 9
retinal rod cell 15
rod bipolar cell 12
root 59
root cap 1
root cortex 5
root endodermis 2
root epidermal cell 13
root epidermis 1
root hair cell 7
root initial cell 2
root meristem 1
root parenchyma 3
root stele 6
salivary gland cell 1
salivary gland glandular cell 5
Schwann cell 31
Schwann cell precursor 2
seam cell 13
sebaceous gland native cell 6
secondary lymphoid organ macrophage 1
secondary spermatocyte 1
secretory cell 3050
seminal vesicle glandular cell 1
seminiferous tubule epithelial cell 37
sensory epithelial cell 33
sensory hair cell 13
sensory neuron 200
sensory neuron of dorsal root ganglion 2
seromucus secreting cell 68
serotonergic neuron 6
serotonin secreting cell 21
Sertoli cell 26
sheath cell 3
sheath cell (sensu Nematoda) 3
short term hematopoietic stem cell 1
simple columnar epithelial cell 2
single fate stem cell 130
single nucleate cell 2381
skeletal muscle fiber 10
skeletal muscle myoblast 4
skeletal muscle satellite cell 20
skeletal muscle satellite myogenic cell 1
skeletal muscle satellite stem cell 1
skin fibroblast 13
Slamf1-negative multipotent progenitor cell 1
Slamf1-positive multipotent progenitor cell 1
slow muscle cell 4
small intestine glandular cell 14
small intestine goblet cell 10
small luteal cell 1
smooth muscle cell 278
smooth muscle cell of prostate 5
smooth muscle cell of the coronary artery 3
smooth muscle cell of the pulmonary artery 1
smooth muscle cell of trachea 1
smooth muscle myoblast 3
somatic stem cell 264
somatostatin secreting cell 16
somatotroph 2
somatotropin secreting cell 2
specialized cardiac myocyte 4
sperm 5
spermatid 79
spermatocyte 73
spermatogonium 70
spinal cord oligodendrocyte 1
spiral ganglion neuron 30
splenic endothelial cell 1
splenic macrophage 1
splenocyte 3
spongiotrophoblast cell 4
squamous epithelial cell 449
stele 8
stem cell 560
stem cell of epidermis 22
steroid hormone secreting cell 35
stomach enteroendocrine cell 1
stratified epithelial cell 64
stratified squamous epithelial cell 64
stretch receptor cell 1
striated muscle cell 110
stromal cell 420
stromal cell of bone marrow 1
stromal cell of endometrium 2
stromal cell of ovary 21
stuff accumulating cell 936
support cell (sensu Nematoda and Protostomia) 5
support cell (sensu Nematoda) 3
supporting cell of cochlea 23
supportive cell 206
surface mucosal cell of stomach 4
surfactant secreting cell 66
sweat secreting cell 3
sympathetic neuron 1
syncytiotrophoblast cell 6
T cell 1664
T follicular helper cell 11
T-helper 1 cell 11
T-helper 17 cell 23
T-helper 2 cell 6
tanycyte 13
taste receptor cell 1
tendon cell 6
terminal Schwann cell 1
testosterone secreting cell 40
theca cell 5
thecogen cell 1
thermoreceptor cell 9
thymocyte 18
thyroid follicular cell 3
thyrotroph 1
tip cell 2
tissue-resident macrophage 270
tonsil germinal center B cell 1
tormogen cell 1
totipotent stem cell 15
touch receptor cell 3
transitional epithelial cell 16
transporting cell 8
trophectodermal cell 6
trophoblast cell 63
trophoblast giant cell 3
type 1 cone bipolar cell (sensu Mus) 1
type 2 cone bipolar cell (sensu Mus) 1
type 3 cone bipolar cell (sensu Mus) 1
type 4 cone bipolar cell (sensu Mus) 2
type 5 cone bipolar cell (sensu Mus) 1
type 6 cone bipolar cell (sensu Mus) 1
type 7 cone bipolar cell (sensu Mus) 1
type 8 cone bipolar cell (sensu Mus) 1
type 9 cone bipolar cell (sensu Mus) 1
type A cell of stomach 2
type A enteroendocrine cell 30
type B pancreatic cell 33
type D cell of stomach 2
type D enteroendocrine cell 16
type EC enteroendocrine cell 7
type G enteroendocrine cell 2
type I cell of adrenal cortex 1
type I NK T cell 16
type I pneumocyte 36
type II cell of adrenal cortex 1
type II muscle cell 1
type II pneumocyte 42
type IIa muscle cell 1
type III cell of adrenal cortex 1
type S enteroendocrine cell 2
urethra cell 2
urothelial cell 14
uterine cervix glandular cell 1
uterine smooth muscle cell 1
valve cell 11
vasa recta cell 2
vascular associated smooth muscle cell 103
vein endothelial cell 30
ventricular cardiac muscle cell 1
vertebrate lens cell 4
vestibular dark cell 2
visceral muscle cell 278
visual pigment cell 15
visual system neuron 99
white fat cell 9
xanthophore cell 4
xylem 2
xylem pole pericycle cell 1
yolk sac hematopoietic stem cell 1
Species
  • Homo sapiens (13586)
  • Mus musculus (7814)
  • Danio rerio (1253)
  • Caenorhabditis elegans (598)
  • Drosophila melanogaster (443)
  • Rattus norvegicus (175)
  • Macaca fascicularis (160)
  • Arabidopsis thaliana (58)
  • Macaca mulatta (45)
Publications
  • 2020
    • Goveia et al. CancerCell (25)
    • Miller et al. DevCell (12)
    • Lotto et al. Cell (63)
    • Marjanovic et al. CancerCell (12)
    • Tran et al. Neuron (45)
    • Cillo et al. Immunity (10)
    • DeSisto et al. DevCell (6)
    • Dong et al. CancerCell (28)
    • Shami et al. DevCell (22)
    • Drokhlyansky et al. Cell (24)
    • Karthaus et al. Science (39)
    • Yan et al. ScientificRep (58)
    • Zhao et al. NatureComm (16)
    • Gojo et al. CancerCell (19)
    • Tucker et al. Circulation (17)
    • Wilk et al. NatureMed (30)
    • Silvin et al. Cell (6)
    • Ziegler et al. Cell (97)
    • Reyes et al. NatureMed (28)
    • Krivanek et al. NatureComm (17)
    • Chen et al. GenomeBiol (22)
    • Kieffer et al. CancerDiscov (6)
    • Cowan et al. Cell (158)
    • Chestnut et al. NatureComm (24)
    • Avrahami et al. MolMetab (7)
    • Domingo-Gonzalez et al. eLife (8)
    • He et al. Nature (36)
    • Han et al. NatureComm (62)
    • Wu et al. JHO (27)
    • Wang et al. CellRes (26)
    • Rinaldi et al. eLife (21)
    • Augsornworawat et al. CellReports (6)
    • Agarwal et al. NatureComm (34)
    • Ge et al. Theranostics (14)
    • Martos et al. CellRepMed (32)
    • Holmes et al. CellReports (15)
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    • Gillen et al. CellReports (15)
    • Lin et al. GenomeMed (9)
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    • Baranek et al. CellReports (9)
    • Lau et al. DevelopmentalCell (11)
    • Brulois et al. NatureComm (8)
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    • Ho et al. ProteinCell (10)
    • Yeo et al. eLife (15)
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    • Ma et al. CellResearch (69)
    • Liu et al. NeurobiolDis (19)
    • Schlesinger et al. NatureComm (26)
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    • Wang et al. NatureComm (7)
    • Qian et al. CellResearch (72)
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    • Aragona et al. Nature (30)
    • Farnsworth et al. DevBiology (220)
    • Tan et al. Development (14)
    • Alshetaiwi et al. ScienceImmuno (13)
    • Ren et al. Circulation (6)
    • Izar et al. NatureMed (18)
    • Stewart et al. Science (80)
    • Guo et al. CellStemCell (20)
    • Wang et al. JExpMed (28)
    • Chen et al. NatureBiotech (41)
    • Liang et al. NatureComm (8)
    • Hung et al. PNAS (22)
    • Ma et al. Cell (171)
    • Kalucka et al. Cell (78)
    • Johnson et al. DevCell (62)
    • Rohlenova et al. CellMetab (20)
    • Zhang et al. Cell (55)
    • Chen et al. eNeuro (7)
    • Wang et al. NatureCellBiol (15)
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    • Kim et al. NatureComm (29)
    • Horns et al. CellReports (1)
    • Durante et al. NatureComm (30)
    • Orozco et al. CellReports (11)
    • Zhang et al. NatureComm (25)
    • Wang et al. Cell (31)
    • Sridhar et al. CellReports (23)
    • He et al. JallergyClinImmunol (44)
    • Wallace et al. eLife (22)
    • Wen et al. NatureNeuroscience (21)
    • Vijay et al. NatureMetab (42)
    • vandenBrink et al. Nature (13)
    • Hu et al. ScientificRep (7)
    • Anderson et al. CellReports (69)
    • Batiuk et al. NatureComm (6)
    • Haensel et al. CellReports (29)
    • Lehmann et al. JExpMed (13)
    • Han et al. Nature (1710)
    • Barruet et al. eLife (17)
    • Kazer et al. NatureMed (12)
    • Fujimoto et al. PlosBiol (4)
    • Zakharov et al. JExpMed (24)
    • Smith et al. BloodAdv (20)
    • Cano-Gamez et al. NatureComm (22)
    • Allen et al. eLife (120)
    • Sole-Boldo et al. CommunBiol (17)
    • Jevitt et al. PlosBiol (32)
    • Zhao et al. CellDiscov (34)
    • Qadir et al. PNAS (7)
    • Kim et al. NatureComm (9)
    • Psaila et al. MolCell (17)
    • Liao et al. NatureMed (14)
    • Kolla et al. NatureComm (59)
    • Khrameeva et al. GenomeRes (16)
    • Davidson et al. CellReports (13)
    • Zhao et al. Angiogenesis (5)
    • Karagiannis et al. NatureComm (61)
  • 2019
    • Elyahu et al. ScienceAdv (14)
    • Baryawno et al. Cell (17)
    • Brown et al. Cell (23)
    • Subramanian et al. NatureComm (57)
    • Xu et al. Immunity (70)
    • Schirmer et al. Nature (22)
    • Lake et al. NatureComm (30)
    • Der et al. NatureImmuno (6)
    • Zhang et al. NatureImmuno (18)
    • TabulaMurisSenis et al. Nature (193)
    • Kalluri et al. Circulation (10)
    • Lukowski et al. EMBO (13)
    • Ramachandran et al. Nature (55)
    • Tran et al. DevCell (20)
    • Popescu et al. Nature (27)
    • Martin et al. Cell (34)
    • Peyser et al. AmJRespirCellMolBiol (17)
    • Hulin et al. Development (18)
    • Neftel et al. Cell (8)
    • Smillie et al. Cell (71)
    • Tibbit et al. Immunity (6)
    • Xiong et al. MolCell (10)
    • Baron et al. Cell (7)
    • Szabo et al. NatureComm (21)
    • Menon et al. NatureComm (21)
    • Kanaya et al. CommunBiol (33)
    • Voigt et al. PNAS (24)
    • Dobbie et al. CellReports (6)
    • Zhao et al. Development (18)
    • Pique-Regi et al. eLife (63)
    • Jones et al. CellStemCell (8)
    • Li et al. Cell (19)
    • Blecher-Gonen et al. CellSystems (16)
    • Kalamakis et al. Cell (9)
    • vanGalen et al. Cell (9)
    • Giordani et al. MolCell (10)
    • Jean-Baptiste et al. PlantCell (17)
    • Wang et al. CellStemCell (14)
    • Zilionis et al. Immunity (127)
    • Weng et al. CellStemCell (27)
    • Mathys et al. Nature (12)
    • Velmeshev et al. Science (34)
    • Cui et al. CellReports (9)
    • Hill et al. Development (52)
    • Haremaki et al. NatureBiotech (9)
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Cell Types
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              • type A cell of stomach (2)
            • type B pancreatic cell (33)
            • type D enteroendocrine cell (16)
              • pancreatic D cell (14)
              • type D cell of stomach (2)
            • type EC enteroendocrine cell (7)
            • type G enteroendocrine cell (2)
            • type S enteroendocrine cell (2)
          • folliculostellate cell (1)
          • luteinizing hormone secreting cell (2)
            • gonadtroph (2)
          • myocardial endocrine cell (4)
          • neuroendocrine cell (39)
            • amine precursor uptake and decarboxylation cell (23)
              • chromaffin cell (23)
                • chromophil cell of anterior pituitary gland (9)
                  • acidophil cell of pars distalis of adenohypophysis (4)
                    • mammotroph (2)
                    • somatotroph (2)
                  • basophil cell of pars distalis of adenohypophysis (5)
                    • corticotroph (2)
                    • gonadtroph (2)
                    • thyrotroph (1)
                • type EC enteroendocrine cell (7)
            • lung neuroendocrine cell (3)
          • pancreatic endocrine cell (100)
            • pancreatic A cell (28)
            • pancreatic D cell (14)
            • pancreatic PP cell (9)
            • type B pancreatic cell (33)
          • steroid hormone secreting cell (35)
            • androgen secreting cell (6)
              • theca cell (5)
              • type III cell of adrenal cortex (1)
            • cortical cell of adrenal gland (6)
              • type I cell of adrenal cortex (1)
              • type II cell of adrenal cortex (1)
              • type III cell of adrenal cortex (1)
            • glucocorticoid secreting cell (1)
              • type II cell of adrenal cortex (1)
            • granulosa cell (14)
            • mineralocorticoid secreting cell (1)
              • type I cell of adrenal cortex (1)
            • progesterone secreting cell (7)
              • luteal cell (7)
                • large luteal cell (1)
                • small luteal cell (1)
        • excitatory neuron (195)
          • retinal bipolar neuron (98)
            • OFF-bipolar cell (16)
            • ON-bipolar cell (18)
            • cone retinal bipolar cell (28)
              • type 2 cone bipolar cell (sensu Mus) (1)
              • type 3 cone bipolar cell (sensu Mus) (1)
              • type 4 cone bipolar cell (sensu Mus) (2)
              • type 5 cone bipolar cell (sensu Mus) (1)
              • type 6 cone bipolar cell (sensu Mus) (1)
              • type 7 cone bipolar cell (sensu Mus) (1)
              • type 8 cone bipolar cell (sensu Mus) (1)
              • type 9 cone bipolar cell (sensu Mus) (1)
            • rod bipolar cell (12)
        • excretory cell (85)
          • renal filtration cell (37)
            • glomerular visceral epithelial cell (37)
        • exocrine cell (59)
          • clear cell of eccrine sweat gland (1)
          • dark cell of eccrine sweat gland (1)
          • hepatic stellate cell (9)
          • mammary gland glandular cell (9)
            • mammary alveolar cell (8)
          • mucus neck cell of gastric gland (2)
          • pancreas exocrine glandular cell (24)
            • pancreatic acinar cell (23)
          • salivary gland glandular cell (5)
            • acinar cell of salivary gland (4)
        • extracellular matrix secreting cell (116)
          • collagen secreting cell (41)
            • chondrocyte (41)
              • hypertrophic chondrocyte (2)
          • glycosaminoglycan secreting cell (41)
            • chondrocyte (41)
              • hypertrophic chondrocyte (2)
          • hepatic stellate cell (9)
          • leptomeningeal cell (25)
        • glandular epithelial cell (427)
          • acinar cell (51)
            • acinar cell of salivary gland (4)
            • pancreatic acinar cell (23)
          • adrenal gland glandular cell (7)
            • cortical cell of adrenal gland (6)
              • type I cell of adrenal cortex (1)
              • type II cell of adrenal cortex (1)
              • type III cell of adrenal cortex (1)
          • chromaffin cell of adrenal gland (1)
            • adrenal medulla chromaffin cell (1)
          • chromophil cell of anterior pituitary gland (9)
            • acidophil cell of pars distalis of adenohypophysis (4)
              • mammotroph (2)
              • somatotroph (2)
            • basophil cell of pars distalis of adenohypophysis (5)
              • corticotroph (2)
              • gonadtroph (2)
              • thyrotroph (1)
          • eccrine cell (2)
            • clear cell of eccrine sweat gland (1)
            • dark cell of eccrine sweat gland (1)
          • endocrine-paracrine cell of prostate gland (4)
          • enteroendocrine cell (151)
            • PP cell (11)
              • pancreatic PP cell (9)
            • intestinal enteroendocrine cell (18)
            • stomach enteroendocrine cell (1)
            • type A enteroendocrine cell (30)
              • pancreatic A cell (28)
              • type A cell of stomach (2)
            • type B pancreatic cell (33)
            • type D enteroendocrine cell (16)
              • pancreatic D cell (14)
              • type D cell of stomach (2)
            • type EC enteroendocrine cell (7)
            • type G enteroendocrine cell (2)
            • type S enteroendocrine cell (2)
          • epididymis glandular cell (1)
          • epithelial cell of thyroid gland (3)
            • thyroid follicular cell (3)
          • gall bladder glandular cell (1)
          • glandular cell of stomach (30)
            • mucous cell of stomach (9)
              • mucus neck cell of gastric gland (2)
              • surface mucosal cell of stomach (4)
              • type G enteroendocrine cell (2)
            • parietal cell (5)
            • peptic cell (7)
            • stomach enteroendocrine cell (1)
            • type A cell of stomach (2)
            • type D cell of stomach (2)
          • glandular cell of the large intestine (7)
            • large intestine goblet cell (6)
            • rectum glandular cell (1)
          • goblet cell (60)
            • gastric goblet cell (2)
            • large intestine goblet cell (6)
            • respiratory goblet cell (6)
              • lung goblet cell (3)
            • small intestine goblet cell (10)
          • mammary gland glandular cell (9)
            • mammary alveolar cell (8)
          • mucous neck cell (3)
            • mucus neck cell of gastric gland (2)
          • oviduct glandular cell (5)
            • glandular cell of endometrium (2)
            • uterine cervix glandular cell (1)
          • pancreas exocrine glandular cell (24)
            • pancreatic acinar cell (23)
          • paneth cell (29)
            • paneth cell of epithelium of small intestine (3)
          • parathyroid glandular cell (2)
          • salivary gland glandular cell (5)
            • acinar cell of salivary gland (4)
          • seminal vesicle glandular cell (1)
          • small intestine glandular cell (14)
            • paneth cell of epithelium of small intestine (3)
            • small intestine goblet cell (10)
          • sweat secreting cell (3)
            • clear cell of eccrine sweat gland (1)
            • dark cell of eccrine sweat gland (1)
        • hatching gland cell (3)
        • inhibitory neuron (94)
        • lung secretory cell (50)
          • lung goblet cell (3)
          • lung neuroendocrine cell (3)
          • type II pneumocyte (42)
        • milk secreting cell (8)
          • mammary alveolar cell (8)
        • neuromast mantle cell (2)
        • peptide hormone secreting cell (126)
          • PP cell (11)
            • pancreatic PP cell (9)
          • adrenocorticotropic hormone secreting cell (2)
            • corticotroph (2)
          • chromophil cell of anterior pituitary gland (9)
            • acidophil cell of pars distalis of adenohypophysis (4)
              • mammotroph (2)
              • somatotroph (2)
            • basophil cell of pars distalis of adenohypophysis (5)
              • corticotroph (2)
              • gonadtroph (2)
              • thyrotroph (1)
          • endorphin secreting cell (9)
            • enkephalin secreting cell (9)
              • type EC enteroendocrine cell (7)
              • type G enteroendocrine cell (2)
          • gastrin secreting cell (2)
            • type G enteroendocrine cell (2)
          • ghrelin secreting cell (5)
            • pancreatic epsilon cell (5)
          • glucagon secreting cell (30)
            • type A enteroendocrine cell (30)
              • pancreatic A cell (28)
              • type A cell of stomach (2)
          • insulin secreting cell (34)
            • type B pancreatic cell (33)
          • melanocyte stimulating hormone secreting cell (2)
          • prolactin secreting cell (2)
            • mammotroph (2)
          • somatostatin secreting cell (16)
            • type D enteroendocrine cell (16)
              • pancreatic D cell (14)
              • type D cell of stomach (2)
          • somatotropin secreting cell (2)
            • somatotroph (2)
          • type S enteroendocrine cell (2)
        • protein secreting cell (155)
          • acinar cell (51)
            • acinar cell of salivary gland (4)
            • pancreatic acinar cell (23)
          • androgen binding protein secreting cell (26)
            • Sertoli cell (26)
          • cumulus cell (6)
          • insulin secreting cell (34)
            • type B pancreatic cell (33)
          • lysozyme secreting cell (29)
            • paneth cell (29)
              • paneth cell of epithelium of small intestine (3)
          • peptic cell (7)
          • prolactin secreting cell (2)
            • mammotroph (2)
        • seromucus secreting cell (68)
          • mucus secreting cell (68)
            • goblet cell (60)
              • gastric goblet cell (2)
              • large intestine goblet cell (6)
              • respiratory goblet cell (6)
                • lung goblet cell (3)
              • small intestine goblet cell (10)
            • mucous neck cell (3)
              • mucus neck cell of gastric gland (2)
            • surface mucosal cell of stomach (4)
        • surfactant secreting cell (66)
          • club cell (24)
          • type II pneumocyte (42)
        • testosterone secreting cell (40)
          • Leydig cell (39)
          • large luteal cell (1)
        • arcade cell (6)
        • cardiocyte (215)
          • cardiac endothelial cell (43)
            • cardiac blood vessel endothelial cell (1)
            • endocardial cell (17)
          • cardiac glial cell (1)
          • cardiac muscle cell (97)
            • fetal cardiomyocyte (5)
            • regular cardiac myocyte (8)
              • regular atrial cardiac myocyte (7)
              • regular ventricular cardiac myocyte (1)
            • specialized cardiac myocyte (4)
              • myocardial endocrine cell (4)
            • ventricular cardiac muscle cell (1)
          • cardiac muscle myoblast (3)
          • epicardial adipocyte (7)
          • fibroblast of cardiac tissue (47)
          • smooth muscle cell of the coronary artery (3)
        • cell of skeletal muscle (56)
          • adult skeletal muscle myoblast (1)
          • multi-potent skeletal muscle stem cell (9)
          • skeletal muscle fiber (9)
            • fast muscle cell (4)
            • red muscle cell (1)
              • type IIa muscle cell (1)
            • slow muscle cell (4)
          • skeletal muscle satellite cell (20)
            • skeletal muscle satellite myogenic cell (1)
            • skeletal muscle satellite stem cell (1)
        • columnar/cuboidal epithelial cell (357)
          • brush border epithelial cell (153)
            • enterocyte (129)
              • enterocyte of epithelium of large intestine (6)
              • enterocyte of epithelium of small intestine (36)
            • epithelial cell of proximal tubule (22)
          • endothelial cell of high endothelial venule (2)
          • interfollicle cell (1)
          • lens epithelial cell (1)
          • myoepithelial cell (19)
            • myoepithelial cell of lactiferous gland (2)
              • myoepithelial cell of mammary gland (2)
            • peritubular myoid cell (11)
          • neurecto-epithelial cell (114)
            • auditory epithelial support cell (10)
              • supporting cell of cochlea (9)
                • Claudius cell (2)
                • border cell of cochlea (3)
                • interdental cell of cochlea (3)
            • corneal endothelial cell (1)
            • ependymal cell (54)
              • choroid plexus epithelial cell (4)
            • epidermal cell (sensu arthropoda) (1)
              • tormogen cell (1)
            • epidermoblast (1)
            • interstitial cell of Cajal (2)
            • neuroendocrine cell (39)
              • amine precursor uptake and decarboxylation cell (23)
                • chromaffin cell (23)
                  • chromophil cell of anterior pituitary gland (9)
                    • mammotroph (2)
                    • somatotroph (2)
                    • corticotroph (2)
                    • gonadtroph (2)
                    • thyrotroph (1)
                  • type EC enteroendocrine cell (7)
              • lung neuroendocrine cell (3)
            • non-pigmented ciliary epithelial cell (1)
            • olfactory epithelial cell (3)
            • pigmented epithelial cell (2)
              • pigmented ciliary epithelial cell (1)
          • renal intercalated cell (39)
            • kidney collecting duct intercalated cell (16)
            • renal alpha-intercalated cell (3)
            • renal beta-intercalated cell (3)
          • renal principal cell (23)
            • kidney collecting duct principal cell (12)
          • sheath cell (3)
          • simple columnar epithelial cell (2)
            • ameloblast (1)
        • conjunctival epithelial cell (21)
        • connective tissue cell (1066)
          • adipose microvascular endothelial cell (1)
          • adventitial cell (1)
          • dental pulp cell (4)
          • fat cell (42)
            • beige adipocyte (1)
            • brown fat cell (4)
            • epicardial adipocyte (7)
            • white fat cell (9)
          • fibroblast (393)
            • embryonic fibroblast (4)
            • fibroblast neural crest derived (1)
            • fibroblast of cardiac tissue (47)
            • fibroblast of connective tissue of prostate (1)
            • fibroblast of lung (48)
            • fibroblast of mammary gland (11)
            • hepatic stellate cell (9)
            • pancreatic stellate cell (6)
            • preadipocyte (7)
            • pulmonary interstitial fibroblast (9)
            • reticular cell (6)
            • skin fibroblast (13)
              • fibroblast of dermis (2)
          • mesenchymal stem cell (38)
            • hair follicle dermal papilla cell (1)
              • hair follicle dermal papilla cell of scalp (1)
            • mesenchymal stem cell of adipose (5)
            • metanephric mesenchyme stem cell (1)
            • nephrogenic mesenchyme stem cell (4)
            • placental amniotic mesenchymal stromal cell (2)
          • osteoblast (20)
          • pericyte cell (147)
            • central nervous system pericyte (46)
              • brain pericyte (45)
            • mesangial cell (10)
            • renal interstitial pericyte (2)
          • stromal cell (420)
            • decidual cell (5)
            • extracellular matrix secreting cell (116)
              • collagen secreting cell (41)
                • chondrocyte (41)
                  • hypertrophic chondrocyte (2)
              • glycosaminoglycan secreting cell (41)
                • chondrocyte (41)
                  • hypertrophic chondrocyte (2)
              • hepatic stellate cell (9)
              • leptomeningeal cell (25)
            • fibrocyte (8)
              • tendon cell (6)
            • stromal cell of bone marrow (1)
            • stromal cell of endometrium (2)
            • stromal cell of ovary (21)
              • luteal cell (7)
                • large luteal cell (1)
                • small luteal cell (1)
              • theca cell (5)
        • duct epithelial cell (158)
          • branched duct epithelial cell (87)
            • cholangiocyte (14)
            • luminal epithelial cell of mammary gland (32)
            • pancreatic ductal cell (41)
          • epididymis glandular cell (1)
          • non-branched duct epithelial cell (31)
            • kidney collecting duct epithelial cell (31)
              • kidney collecting duct intercalated cell (16)
              • kidney collecting duct principal cell (12)
          • seminal vesicle glandular cell (1)
          • seminiferous tubule epithelial cell (37)
            • Sertoli cell (26)
            • peritubular myoid cell (11)
        • ecto-epithelial cell (314)
          • ameloblast (1)
          • general ecto-epithelial cell (137)
            • corneal epithelial cell (6)
            • dental pulp cell (4)
            • endocrine-paracrine cell of prostate gland (4)
            • epidermal cell (113)
              • epidermal cell (sensu arthropoda) (1)
                • tormogen cell (1)
              • epithelial cell of sweat gland (2)
                • clear cell of eccrine sweat gland (1)
                • dark cell of eccrine sweat gland (1)
              • keratinocyte (61)
                • basal cell of epidermis (19)
                • granular cell of epidermis (1)
                • keratinocyte stem cell (5)
                • prickle cell (3)
              • taste receptor cell (1)
            • epithelial cell of skin gland (2)
              • epithelial cell of sweat gland (2)
                • clear cell of eccrine sweat gland (1)
                • dark cell of eccrine sweat gland (1)
            • mammary alveolar cell (8)
          • keratinizing barrier epithelial cell (64)
            • keratinized cell of the oral mucosa (2)
            • keratinized squamous cell of esophagus (1)
            • keratinocyte (61)
              • basal cell of epidermis (19)
              • granular cell of epidermis (1)
              • keratinocyte stem cell (5)
              • prickle cell (3)
          • neurecto-epithelial cell (112)
            • auditory epithelial support cell (10)
              • supporting cell of cochlea (9)
                • Claudius cell (2)
                • border cell of cochlea (3)
                • interdental cell of cochlea (3)
            • corneal endothelial cell (1)
            • ependymal cell (54)
              • choroid plexus epithelial cell (4)
            • epidermal cell (sensu arthropoda) (1)
              • tormogen cell (1)
            • epidermoblast (1)
            • interstitial cell of Cajal (2)
            • neuroendocrine cell (37)
              • amine precursor uptake and decarboxylation cell (21)
                • chromaffin cell (21)
                  • chromophil cell of anterior pituitary gland (7)
                    • mammotroph (2)
                    • somatotroph (2)
                    • gonadtroph (2)
                    • thyrotroph (1)
                  • type EC enteroendocrine cell (7)
              • lung neuroendocrine cell (3)
            • non-pigmented ciliary epithelial cell (1)
            • olfactory epithelial cell (3)
            • pigmented epithelial cell (2)
              • pigmented ciliary epithelial cell (1)
        • embryonic blood vessel endothelial progenitor cell (2)
        • endo-epithelial cell (485)
          • brush cell (27)
            • brush cell of epithelium proper of large intestine (2)
          • endothelial cell of viscerocranial mucosa (3)
            • buccal mucosa cell (2)
              • keratinized cell of the oral mucosa (2)
          • epithelial cell of alimentary canal (323)
            • M cell of gut (3)
              • microfold cell of epithelium of small intestine (2)
            • epithelial cell of esophagus (3)
              • keratinized squamous cell of esophagus (1)
            • epithelial cell of stomach (32)
              • glandular cell of stomach (30)
                • mucous cell of stomach (9)
                  • mucus neck cell of gastric gland (2)
                  • surface mucosal cell of stomach (4)
                  • type G enteroendocrine cell (2)
                • parietal cell (5)
                • peptic cell (7)
                • stomach enteroendocrine cell (1)
                • type A cell of stomach (2)
                • type D cell of stomach (2)
            • intestinal epithelial cell (270)
              • enterocyte (129)
                • enterocyte of epithelium of large intestine (6)
                • enterocyte of epithelium of small intestine (36)
              • epithelial cell of large intestine (24)
                • brush cell of epithelium proper of large intestine (2)
                • colon epithelial cell (7)
                  • colon glandular cell (2)
                    • appendix glandular cell (1)
                  • epithelial cell of appendix (1)
                    • appendix glandular cell (1)
                • enterocyte of epithelium of large intestine (6)
                • glandular cell of the large intestine (7)
                  • large intestine goblet cell (6)
                  • rectum glandular cell (1)
              • epithelial cell of small intestine (57)
                • enterocyte of epithelium of small intestine (36)
                • microfold cell of epithelium of small intestine (2)
                • small intestine glandular cell (14)
                  • paneth cell of epithelium of small intestine (3)
                  • small intestine goblet cell (10)
              • intestinal crypt stem cell (3)
              • intestinal enteroendocrine cell (18)
              • paneth cell (29)
                • paneth cell of epithelium of small intestine (3)
            • keratinized cell of the oral mucosa (2)
            • oral mucosa squamous cell (1)
            • salivary gland glandular cell (5)
              • acinar cell of salivary gland (4)
            • type EC enteroendocrine cell (7)
          • epithelial cell of prostate (28)
            • basal cell of prostate epithelium (8)
              • prostate stem cell (1)
            • luminal cell of prostate epithelium (11)
          • epithelial cell of thymus (40)
            • cortical thymic epithelial cell (3)
            • medullary thymic epithelial cell (34)
          • epithelial cell of thyroid gland (3)
            • thyroid follicular cell (3)
          • epithelial cell of uterus (8)
            • columnar cell of endocervix (1)
          • respiratory epithelial cell (52)
            • epithelial cell of lower respiratory tract (35)
              • epithelial cell of tracheobronchial tree (35)
                • basal epithelial cell of tracheobronchial tree (2)
                • bronchial epithelial cell (26)
                  • ciliated cell of the bronchus (2)
                  • club cell (24)
                • ciliated columnar cell of tracheobronchial tree (7)
            • respiratory basal cell (13)
              • basal cell of epithelium of bronchus (2)
          • taste receptor cell (1)
        • epithelial cell of cervix (3)
          • columnar cell of endocervix (1)
          • uterine cervix glandular cell (1)
        • epithelial cell of gall bladder (1)
          • gall bladder glandular cell (1)
        • epithelial cell of pancreas (167)
          • epithelial cell of exocrine pancreas (66)
            • pancreas exocrine glandular cell (24)
              • pancreatic acinar cell (23)
            • pancreatic centro-acinar cell (1)
            • pancreatic ductal cell (41)
          • pancreatic A cell (28)
          • pancreatic D cell (14)
          • pancreatic PP cell (9)
          • type B pancreatic cell (33)
        • extraembryonic cell (74)
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        • fenestrated cell (18)
          • glomerular endothelial cell (15)
        • flatworm hypodermal cell (24)
        • glandular epithelial cell (421)
          • acinar cell (51)
            • acinar cell of salivary gland (4)
            • pancreatic acinar cell (23)
          • adrenal gland glandular cell (7)
            • cortical cell of adrenal gland (6)
              • type I cell of adrenal cortex (1)
              • type II cell of adrenal cortex (1)
              • type III cell of adrenal cortex (1)
          • chromaffin cell of adrenal gland (1)
            • adrenal medulla chromaffin cell (1)
          • chromophil cell of anterior pituitary gland (3)
            • acidophil cell of pars distalis of adenohypophysis (2)
              • somatotroph (2)
            • basophil cell of pars distalis of adenohypophysis (1)
              • thyrotroph (1)
          • eccrine cell (2)
            • clear cell of eccrine sweat gland (1)
            • dark cell of eccrine sweat gland (1)
          • endocrine-paracrine cell of prostate gland (4)
          • enteroendocrine cell (151)
            • PP cell (11)
              • pancreatic PP cell (9)
            • intestinal enteroendocrine cell (18)
            • stomach enteroendocrine cell (1)
            • type A enteroendocrine cell (30)
              • pancreatic A cell (28)
              • type A cell of stomach (2)
            • type B pancreatic cell (33)
            • type D enteroendocrine cell (16)
              • pancreatic D cell (14)
              • type D cell of stomach (2)
            • type EC enteroendocrine cell (7)
            • type G enteroendocrine cell (2)
            • type S enteroendocrine cell (2)
          • epididymis glandular cell (1)
          • epithelial cell of thyroid gland (3)
            • thyroid follicular cell (3)
          • gall bladder glandular cell (1)
          • glandular cell of stomach (30)
            • mucous cell of stomach (9)
              • mucus neck cell of gastric gland (2)
              • surface mucosal cell of stomach (4)
              • type G enteroendocrine cell (2)
            • parietal cell (5)
            • peptic cell (7)
            • stomach enteroendocrine cell (1)
            • type A cell of stomach (2)
            • type D cell of stomach (2)
          • glandular cell of the large intestine (7)
            • large intestine goblet cell (6)
            • rectum glandular cell (1)
          • goblet cell (60)
            • gastric goblet cell (2)
            • large intestine goblet cell (6)
            • respiratory goblet cell (6)
              • lung goblet cell (3)
            • small intestine goblet cell (10)
          • mammary gland glandular cell (9)
            • mammary alveolar cell (8)
          • mucous neck cell (3)
            • mucus neck cell of gastric gland (2)
          • oviduct glandular cell (5)
            • glandular cell of endometrium (2)
            • uterine cervix glandular cell (1)
          • pancreas exocrine glandular cell (24)
            • pancreatic acinar cell (23)
          • paneth cell (29)
            • paneth cell of epithelium of small intestine (3)
          • parathyroid glandular cell (2)
          • salivary gland glandular cell (5)
            • acinar cell of salivary gland (4)
          • seminal vesicle glandular cell (1)
          • small intestine glandular cell (14)
            • paneth cell of epithelium of small intestine (3)
            • small intestine goblet cell (10)
          • sweat secreting cell (3)
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        • hair follicle cell (19)
        • hematopoietic cell (7690)
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              • CD115-positive monocyte OR common dendritic progenitor (2)
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                  • Fraction A pre-pro B cell (2)
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                • pro-NK cell (1)
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                  • DN1 thymic pro-T cell (2)
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                • monopoietic cell (6)
                  • promonocyte (6)
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